Best Alignments for T0356

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2fcr/T0356-2fcr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcr/T0356-2fcr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3042e+001.23e-05 1rcf c.23.5.1
1fmcA/T0356-1fmcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fmcA/T0356-1fmcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7654e+002.04e-12 1cydA c.2.1.2
1o2dA/T0356-1o2dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o2dA/T0356-1o2dA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2127e+008.57e-06 e.22.1.2
1xn7A/T0356-1xn7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xn7A/T0356-1xn7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3087e+007.71e-06
1lvaA/T0356-1lvaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lvaA/T0356-1lvaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6961e+003.65e-09 a.4.5.35
a.4.5.35
a.4.5.35
a.4.5.35
1aisB/T0356-1aisB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1aisB/T0356-1aisB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7616e+008.90e-08 1aisB a.74.1.2
a.74.1.2
1z15A/T0356-1z15A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z15A/T0356-1z15A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5578e+003.91e-09
2gu2A/T0356-2gu2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gu2A/T0356-2gu2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8500e+005.95e-12
1xx6A/T0356-1xx6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xx6A/T0356-1xx6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.5359e+002.17e-03
1lddA/T0356-1lddA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lddA/T0356-1lddA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6349e+007.30e-05 a.4.5.34

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001