# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fnaA 357 3.38e+00 1wxaA 116 5.49e+00 2c9aA 259 1.06e+01 1zs9A 261 1.09e+01 1i5gA 144 1.18e+01 1ewxA c.47.1.10 61784 1jsg 114 1.23e+01 1a1x b.63.1.1 27513 2fcr 173 1.38e+01 1rcf c.23.5.1 31151 1o6jA 150 1.42e+01 c.47.1.10 81089 1yhpA 212 1.46e+01 1d3uB 201 1.57e+01 1aisB a.74.1.2,a.74.1.2 18386,18387 1vd5A 377 1.75e+01 a.102.1.7 108518 1xx6A 191 1.75e+01 1hkfA 122 1.97e+01 b.1.1.1 83553 1n93X 375 2.07e+01 a.206.1.1 91707 1xn7A 78 2.07e+01 1zxmA 400 2.17e+01 1jwyB 315 2.20e+01 c.37.1.8 67401 1lddA 74 2.28e+01 a.4.5.34 73841 1aisB 200 2.29e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1oq9A 363 2.33e+01 a.25.1.2 87257 1t6cA 315 2.39e+01 c.55.1.8,c.55.1.8 106558,106559 2fv1A 377 2.63e+01 1kqfB 294 2.69e+01 d.58.1.5,f.23.22.1 75900,75901 1j3wA 163 2.70e+01 d.110.7.1 90833 1rqlA 267 2.80e+01 c.108.1.3 97750 1xgkA 352 3.03e+01 2gtsA 86 3.19e+01 1yymG 313 3.22e+01 1rzjG 321 3.48e+01 d.172.1.1 98200 1jx2B 315 3.53e+01 c.37.1.8 67404 1kit 757 3.53e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 1rdfA 267 3.68e+01 c.108.1.3 104884 1o97D 320 3.74e+01 c.26.2.3,c.31.1.2 81233,81234 1k6xA 352 3.75e+01 c.2.1.2 68238 1m7vA 363 4.05e+01 d.174.1.1 78748 1fezA 256 4.13e+01 1fezA c.108.1.3 43343 1g9mG 321 4.17e+01 1gc1G d.172.1.1 42492 1vhwA 253 4.19e+01 c.56.2.1 100706 1m5q1 130 4.20e+01 1b0pA 1231 4.21e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 31831,31832,33104,34157,39003 1pjzA 203 4.25e+01 c.66.1.36 94794 1g7cB 94 4.36e+01 1b64 d.58.12.1 39308 1cpt 412 4.36e+01 1cpt a.104.1.1 18968 2bptA 861 4.37e+01 1x99A 145 4.46e+01 1w0pA 781 4.58e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1f60B 94 4.59e+01 1b64 d.58.12.1 39307 1jwiB 125 4.61e+01 d.169.1.1 67384 1jubA 311 4.66e+01 c.1.4.1 90908 1ymmE 249 4.70e+01 1x7vA 99 4.81e+01 d.58.4.11 109501 1qgrA 876 5.00e+01 1qgrA a.118.1.1 19119 1x6mA 196 5.02e+01 1hmy 327 5.07e+01 6mhtA c.66.1.26 34229 1o6dA 163 5.21e+01 c.116.1.3 92567 1hg2A 289 5.25e+01 1hg5A a.7.8.2,a.118.9.3 90358,90359 1qba 858 5.30e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21810,22406,29009,40408 1k6iA 352 5.44e+01 c.2.1.2 68223 1dorA 311 5.55e+01 2dorA c.1.4.1 28595 1a1w 91 5.67e+01 1a1z a.77.1.4 18425 1gc1G 321 5.79e+01 1gc1G d.172.1.1 42493 1zzpA 130 5.85e+01 1hf8A 289 6.04e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1pk9A 237 6.07e+01 c.56.2.1 94823 2dorA 311 6.09e+01 2dorA c.1.4.1 28593 2fyxA 143 6.09e+01 1hg5A 289 6.21e+01 1hg5A a.7.8.2,a.118.9.3 90360,90361 1tw4A 125 6.61e+01 1ecpA 238 6.74e+01 1ecpA c.56.2.1 33775 1a1z 91 6.76e+01 1a1z a.77.1.4 18427 1q1hA 110 6.77e+01 a.4.5.41 95580 1rom 403 6.96e+01 1rom a.104.1.1 18963 2liv 344 7.07e+01 2liv c.93.1.1 35708 1e96B 203 7.08e+01 1e96B a.118.8.1 19211 2ao0A 324 7.09e+01 1fnlA 175 7.10e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1hh8A 213 7.26e+01 1e96B a.118.8.1 61042 1bcpF 99 7.78e+01 1prtF b.40.2.1 25142 1ezoA 370 7.80e+01 4mbp c.94.1.1 59539 1np4A 184 7.95e+01 1np1A b.60.1.1 27166 1qf6A 642 8.02e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1c7sA 858 8.04e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1k9sA 237 8.05e+01 c.56.2.1 68359 1bc5A 269 8.05e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1prtF 98 8.13e+01 1prtF b.40.2.1 25140 1afrA 345 8.16e+01 1afrA a.25.1.2 16805 1q8yA 373 8.29e+01 d.144.1.7 96234 1cmnA 402 8.33e+01 1rom a.104.1.1 18958 1o5oA 221 8.34e+01 c.61.1.1 92509 2fiyA 309 8.56e+01 1eyyA 510 8.70e+01 1eyyA c.82.1.1 35389 1y02A 120 8.76e+01 1uw4A 91 8.76e+01 d.58.7.4 100071 1kekA 1231 8.82e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 68524,68525,68526,68527,68528