# List of top-scoring protein chains for T0356.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xx6A 191 1.14e+00 1fg4A 149 1.95e+00 1ewxA c.47.1.10 59814 1o6jA 150 1.96e+00 c.47.1.10 81089 1oc9A 152 1.97e+00 c.47.1.10 86797 1o81A 152 1.97e+00 c.47.1.10 81175 1rzoA 262 3.15e+00 1i5gA 144 3.24e+00 1ewxA c.47.1.10 61784 2gf5A 191 5.27e+00 1uq4A 263 5.79e+00 d.165.1.1 99777 1ift 263 5.87e+00 1mrj d.165.1.1 42211 1obs 267 5.91e+00 1mrj d.165.1.1 42213 1br5A 267 5.98e+00 1mrj d.165.1.1 42217 1zb0A 268 6.04e+00 1j1mA 268 6.43e+00 d.165.1.1 90767 1uarA 285 6.46e+00 c.46.1.2,c.46.1.2 107762,107763 2et6A 604 8.77e+00 1w1wA 430 9.45e+00 1g3qA 237 1.05e+01 1hyqA c.37.1.10 60237 1uq5A 263 1.13e+01 d.165.1.1 99778 1srvA 145 1.42e+01 1derA c.8.5.1 30817 1yhpA 212 1.49e+01 1dqpA 230 1.53e+01 1dqnA c.61.1.1 34069 1vj2A 126 1.54e+01 b.82.1.10 100796 1rzuA 485 1.58e+01 c.87.1.8 105140 1up4A 415 1.59e+01 1up6A 416 1.59e+01 c.2.1.5,d.162.1.2 107976,107977 1up7A 417 1.60e+01 1nhcA 336 1.71e+01 b.80.1.3 91879 1t83C 176 1.73e+01 b.1.1.4,b.1.1.4 106647,106648 1fnlA 175 1.74e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1e4jA 176 1.75e+01 2fcbA b.1.1.4,b.1.1.4 21785,21786 1hq8A 123 1.90e+01 1b6e d.169.1.1 61127 1vl8A 267 2.05e+01 c.2.1.2 108733 1elvA 333 2.10e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1umwA 237 2.17e+01 d.223.1.2,d.223.1.2 99631,99632 1uayA 242 2.19e+01 c.2.1.2 88390 1q4kA 259 2.29e+01 d.223.1.2,d.223.1.2 95797,95798 1ecfA 504 2.38e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2d1sA 548 2.39e+01 2d1tA 548 2.43e+01 1qexA 288 2.53e+01 1qexA b.32.1.1 24425 1ckmA 330 2.57e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1cknB 330 2.57e+01 1ckmA b.40.4.6,d.142.2.3 25361,41588 2gc9A 179 2.61e+01 1hkfA 122 2.69e+01 b.1.1.1 83553 1j5kA 89 2.77e+01 d.51.1.1 71565 1vne 609 3.08e+01 1vns a.111.1.3 19063 2czgA 433 3.12e+01 1x18E 231 3.13e+01 1vnf 609 3.24e+01 1vns a.111.1.3 19067 1lk5A 229 3.26e+01 c.124.1.4,d.58.40.1 73960,73961 1iduA 609 3.29e+01 1vns a.111.1.3 62303 1vns 609 3.29e+01 1vns a.111.1.3 19061 1vng 609 3.29e+01 1vns a.111.1.3 19066 1ynoA 527 3.33e+01 1bfd 528 3.33e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1pi3A 528 3.33e+01 1q6zA 528 3.34e+01 1uekA 275 3.59e+01 d.14.1.5,d.58.26.5 88483,88484 1orfA 234 3.84e+01 b.47.1.2 87338 1zjrA 211 3.91e+01 1na7A 329 3.96e+01 d.144.1.7 91752 1pjkA 334 4.00e+01 d.144.1.7 88122 1jwhA 337 4.01e+01 d.144.1.7 71913 1pj5A 830 4.07e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1ehwA 162 4.19e+01 1npk d.58.6.1 39088 1m5q1 130 4.36e+01 1ionA 243 4.38e+01 c.37.1.10 62633 1jx2B 315 4.42e+01 c.37.1.8 67404 1dhn 121 4.47e+01 1dhn d.96.1.3 40663 1mk4A 157 4.70e+01 d.108.1.1 84979 1svuA 327 4.81e+01 c.66.1.26 106052 1u6lA 149 4.82e+01 1vnh 609 4.84e+01 1vns a.111.1.3 19062 2ac5A 316 4.95e+01 1ji5A 142 5.12e+01 a.25.1.1 71678 2c30A 321 5.38e+01 1pnsB 234 5.44e+01 i.1.1.1 88169 1mo7A 213 5.46e+01 d.220.1.1 85028 1f1cA 129 5.47e+01 1e29A a.3.1.1 59569 1ymiA 334 5.47e+01 1khmA 89 5.47e+01 1dt4A d.51.1.1 38809 1wy0A 342 5.58e+01 2bmxA 195 5.70e+01 1olmA 403 5.72e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2fcr 173 5.73e+01 1rcf c.23.5.1 31151 1i94B 255 5.73e+01 1fjfB c.23.15.1 61991 1fjgB 256 5.75e+01 1fjfB c.23.15.1 31400 1f16A 192 5.76e+01 1f16A f.1.4.1 43400 1snzA 344 5.92e+01 b.30.5.4 98930 1olmE 403 5.93e+01 a.5.3.1,b.132.1.1,c.13.1.1 104014,104015,104016 1b35D 57 5.95e+01 1b35D b.121.4.1 83038 1rjwA 339 5.97e+01 b.35.1.2,c.2.1.1 97582,97583 1wsuA 124 6.00e+01 2c7pA 327 6.05e+01 1f5aA 513 6.50e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1q79A 514 6.50e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1sjpA 504 6.52e+01 1ex4A 239 6.69e+01 1b9dA b.34.7.1,c.55.3.2 24627,33670 2ac3A 316 6.87e+01 1vm6A 228 6.94e+01 c.2.1.3,d.81.1.3 108876,108877 1qmcA 52 7.00e+01 1ihvA b.34.7.1 24633 1g7uA 284 7.06e+01 1d9eA c.1.10.4 60334 1phwA 284 7.08e+01 c.1.10.4 104155 2b69A 343 7.31e+01 1o73A 144 7.34e+01 c.47.1.10 86638 2c7rA 327 7.82e+01 1y7pA 223 7.95e+01 1kit 757 8.06e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 1w0pA 781 8.07e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1lvaA 258 8.08e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1wkjA 137 8.14e+01 1z8gA 372 8.19e+01 1pbtA 244 8.27e+01 c.124.1.1 94416 1yymG 313 8.49e+01 1noyA 388 8.64e+01 1clqA c.55.3.5 33713 1c0pA 363 8.81e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1xjlA 319 8.92e+01 1w7bA 339 8.93e+01