# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wy0A 342 4.13e-01 1elvA 333 4.69e-01 5ptp b.47.1.2,g.18.1.1 59454,59455 1lddA 74 8.26e-01 a.4.5.34 73841 1xn7A 78 1.76e+00 1nvvS 481 2.02e+00 a.117.1.1 86279 1sfe 180 2.06e+00 1sfe a.4.2.1,c.55.7.1 16073,33748 1pn0A 665 2.14e+00 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2aeuA 374 2.32e+00 2fcr 173 2.49e+00 1rcf c.23.5.1 31151 1xx6A 191 3.28e+00 1srvA 145 4.97e+00 1derA c.8.5.1 30817 1i5gA 144 5.05e+00 1ewxA c.47.1.10 61784 1i3cA 149 5.10e+00 c.23.1.1 71112 1zjcA 418 5.18e+00 1pswA 348 6.25e+00 c.87.1.7 88287 1rzuA 485 6.73e+00 c.87.1.8 105140 1qwrA 319 6.90e+00 b.82.1.3 96491 1zin 217 7.01e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1gveA 327 7.29e+00 c.1.7.1 70597 1xmkA 79 7.91e+00 1ub9A 100 8.13e+00 a.4.5.28 99159 1xq6A 253 8.25e+00 1y02A 120 8.33e+00 1xt5A 135 9.28e+00 1kkhA 317 9.69e+00 d.14.1.5,d.58.26.3 72645,72646 2gtsA 86 9.87e+00 1ivyA 452 9.89e+00 1ivyA c.69.1.5 34654 1vfsA 386 1.01e+01 b.49.2.2,c.1.6.1 108584,108585 1g3qA 237 1.02e+01 1hyqA c.37.1.10 60237 1uk8A 282 1.06e+01 c.69.1.10 107907 2cfxA 144 1.07e+01 1lvaA 258 1.18e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1dqpA 230 1.21e+01 1dqnA c.61.1.1 34069 1guxA 218 1.25e+01 1guxA a.74.1.3 18388 2a0b 125 1.27e+01 2a0b a.24.10.1 16630 1x99A 145 1.33e+01 1z1dA 103 1.34e+01 1zxmA 400 1.35e+01 1t6cA 315 1.37e+01 c.55.1.8,c.55.1.8 106558,106559 1k66A 149 1.38e+01 c.23.1.1 90941 2ethA 154 1.40e+01 1umzA 278 1.53e+01 b.29.1.2 99639 2ff4A 388 1.55e+01 2d1sA 548 1.56e+01 1uv7A 110 1.60e+01 d.67.4.1 100040 2fx0A 201 1.66e+01 1umwA 237 1.68e+01 d.223.1.2,d.223.1.2 99631,99632 1yyqA 374 1.70e+01 1xszA 356 1.75e+01 1pueE 89 1.78e+01 1awcA a.4.5.21 16165 1olmA 403 1.83e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1jubA 311 1.93e+01 c.1.4.1 90908 1b4pA 217 1.94e+01 a.45.1.1,c.47.1.5 83158,83159 2ex2A 458 1.95e+01 1tz9A 367 1.96e+01 c.1.15.6 107466 1z15A 344 2.03e+01 1vhwA 253 2.05e+01 c.56.2.1 100706 1zrn 232 2.06e+01 1qq5A c.108.1.1 43323 1kid 203 2.10e+01 1derA c.8.5.1 30771 1fmcA 255 2.11e+01 1cydA c.2.1.2 29856 1tqnA 486 2.20e+01 a.104.1.1 107238 1gtmA 419 2.27e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1eokA 290 2.29e+01 1eokA c.1.8.5 28991 1sgvA 316 2.32e+01 b.122.1.1,d.265.1.2 98858,98859 1uzxA 169 2.32e+01 d.20.1.2 100238 1kl1A 419 2.35e+01 c.67.1.4 72663 1xknA 355 2.35e+01 1f9vA 347 2.37e+01 1bg2 c.37.1.9 59745 1v93A 296 2.40e+01 c.1.23.1 100532 2be3A 226 2.44e+01 1aisB 200 2.45e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1up7A 417 2.45e+01 1z83A 196 2.49e+01 1y13A 181 2.53e+01 1rzsA 61 2.56e+01 a.35.1.2 105139 1io7A 368 2.58e+01 1f4tA a.104.1.1 18971 1ni4A 365 2.61e+01 c.36.1.11 85728 2c7pA 327 2.61e+01 1yjsA 419 2.61e+01 2c4jA 218 2.70e+01 1sumB 235 2.70e+01 a.7.12.1 106025 2a3nA 355 2.72e+01 1vhqA 232 2.72e+01 c.23.16.2 100696 1rkuA 206 2.73e+01 c.108.1.11 97627 2bptA 861 2.74e+01 2c07A 285 2.75e+01 1em9A 154 2.77e+01 1d1dA a.73.1.1 18333 1ylmA 144 2.84e+01 1fg7A 356 2.88e+01 1gewA c.67.1.1 59819 1aocA 175 2.92e+01 1aocA g.17.1.5 44817 1z6nA 167 2.93e+01 2ebn 289 2.93e+01 2ebn c.1.8.5 28990 2fq4A 192 2.97e+01 1t6nA 220 2.99e+01 c.37.1.19 106576 1xt8A 292 2.99e+01 2b0cA 206 3.03e+01 2a61A 145 3.08e+01 1geeA 261 3.14e+01 c.2.1.2 90509 1noyA 388 3.18e+01 1clqA c.55.3.5 33713 1wi9A 72 3.19e+01 1vzwA 244 3.31e+01 1ddwA 120 3.40e+01 1evhA b.55.1.4 27001 1yk3A 210 3.46e+01 2amxA 376 3.50e+01 2bh1A 250 3.50e+01 1zjjA 263 3.50e+01 2feaA 236 3.53e+01 1g5aA 628 3.53e+01 b.71.1.1,c.1.8.1 65152,65153 2cj4A 150 3.59e+01 1jhfA 202 3.59e+01 a.4.5.2,b.87.1.1 63057,63058 1fxoA 293 3.67e+01 1g0rA c.68.1.6 34524 1f7cA 231 3.67e+01 1f7cA a.116.1.1 19107 2fuqA 747 3.70e+01 2bjrA 368 3.79e+01 2fnjC 96 3.79e+01 1b8dA 164 3.83e+01 1cpcA a.1.1.3 15665 1nbcA 155 3.90e+01 1nbcA b.2.2.2 22390 1vr5A 547 3.94e+01 1u5tA 233 3.95e+01 a.4.5.54,a.4.5.54 107684,107685 1bc5A 269 3.99e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 2cvlA 124 4.00e+01 1r6lA 239 4.00e+01 d.14.1.4,d.101.1.1 97153,97154 1q6zA 528 4.08e+01 1r3eA 309 4.10e+01 b.122.1.1,d.265.1.2 96907,96908 1zjrA 211 4.11e+01 1xppA 115 4.14e+01 1w0pA 781 4.14e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1aqcA 172 4.17e+01 1x11A b.55.1.2 26983 1hx1B 114 4.19e+01 1hx1B a.7.7.1 61350 1o9gA 250 4.21e+01 c.66.1.29 86692 3sdhA 146 4.28e+01 3sdhA a.1.1.2 14984 1e6bA 221 4.28e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1svmA 377 4.28e+01 2dbyA 368 4.30e+01 1y5eA 169 4.36e+01 1wolA 122 4.36e+01 2rslA 140 4.40e+01 2rslA c.53.1.1 33345 2fulA 178 4.41e+01 1t2bA 397 4.42e+01 1x0rA 249 4.45e+01 1eiwA 111 4.46e+01 1eiwA c.23.3.1 31130 1vqzA 341 4.47e+01 2fm8A 135 4.50e+01 1zs9A 261 4.55e+01 2fyxA 143 4.58e+01 1m5q1 130 4.71e+01 1pot 325 4.80e+01 1pot c.94.1.1 35807 1h4vB 421 4.81e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1fnlA 175 4.81e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 3fapB 94 4.83e+01 1nsgB a.24.7.1 16612 1zkdA 387 4.84e+01 1upqA 123 4.87e+01 1vi9A 299 4.89e+01 c.72.1.5 100750 1hw5A 210 4.93e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2fpoA 202 5.04e+01 1ymiA 334 5.08e+01 1lm8C 96 5.09e+01 d.42.1.1 74034 1t5iA 172 5.43e+01 c.37.1.19 106450 1hw1A 239 5.45e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1on3A 523 5.51e+01 c.14.1.4,c.14.1.4 87107,87108 1y0nA 78 5.62e+01 1vbuA 328 5.65e+01 1it2A 146 5.71e+01 a.1.1.2 66365 1l6sA 323 5.72e+01 c.1.10.3 73627 2g8lA 299 5.72e+01 1rxwA 336 5.72e+01 a.60.7.1,c.120.1.2 98059,98060 1j1nA 492 5.76e+01 c.94.1.1 83978 2gptA 523 5.76e+01 1uq5A 263 6.05e+01 d.165.1.1 99778 1xd7A 145 6.06e+01 a.4.5.55 109566 1omoA 322 6.14e+01 c.2.1.13 104017 2a5hA 416 6.19e+01 1w7bA 339 6.20e+01 256bA 106 6.28e+01 256bA a.24.3.1 16539 2as9A 210 6.30e+01 1ytvA 366 6.33e+01 2bh4X 134 6.34e+01 1wkaA 147 6.35e+01 1ec7A 446 6.35e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 2f06A 144 6.43e+01 1qd9A 124 6.44e+01 1qu9A d.79.1.1 39758 1giqA 413 6.50e+01 d.166.1.1,d.166.1.1 76224,76225 1s7kA 182 6.63e+01 1vkyA 347 6.77e+01 e.53.1.1 108696 1oaa 259 6.80e+01 1oaa c.2.1.2 29829 1jysA 242 6.84e+01 c.56.2.1 77216 1wstA 417 6.86e+01 1uj8A 77 6.94e+01 1j2zA 270 6.95e+01 b.81.1.1 90805 2bfxA 284 6.97e+01 1y0uA 96 6.98e+01 2gi3A 476 7.03e+01 1euvA 221 7.03e+01 1euvA d.3.1.7 37133 1v92A 46 7.03e+01 a.5.2.3 100531 1pu1A 94 7.13e+01 d.266.1.1 104307 1af7 274 7.15e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1jd1A 129 7.16e+01 1qu9A d.79.1.1 62890 1ydwA 362 7.17e+01 1z2lA 423 7.17e+01 2etvA 346 7.19e+01 1zd3A 555 7.25e+01 1z6mA 175 7.30e+01 1wx1A 335 7.38e+01 2gyqA 175 7.43e+01 1hq1A 105 7.55e+01 1dulA a.36.1.1 17120 1m12A 84 7.61e+01 a.64.1.1 84745 2fug7 129 7.75e+01 1ji7A 89 7.77e+01 a.60.1.1 71682 2bogX 286 7.79e+01 1x9mA 698 7.80e+01 1pvaA 110 7.81e+01 1a75A a.39.1.4 17207 1jl2A 156 7.85e+01 c.55.3.1 66822 1repC 251 7.89e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2dbbA 151 7.89e+01 2fg1A 158 7.93e+01 1ozjA 144 7.96e+01 d.164.1.1 93846 1xkyA 301 7.97e+01 1d3yA 301 8.03e+01 1d3yA e.12.1.1 43252 1iruK 201 8.07e+01 d.153.1.4 71362 1gca 309 8.13e+01 1gca c.93.1.1 35659 1t3tA 1303 8.16e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1qwlA 505 8.19e+01 e.5.1.1 96483 2fnaA 357 8.22e+01 1z0jA 170 8.29e+01 1i36A 264 8.30e+01 a.100.1.8,c.2.1.6 71108,71109 2eryA 172 8.32e+01 2a38A 194 8.39e+01 1z8gA 372 8.39e+01 1t6t1 118 8.48e+01 1pixA 587 8.50e+01 c.14.1.4 94708 1pvdA 537 8.55e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1vl5A 260 8.57e+01 c.66.1.41 108720 1hyhA 309 8.65e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1g8sA 230 8.72e+01 c.66.1.3 90507