# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oz9A 150 1.23e-01 d.92.1.15 93808 2f51A 118 1.71e-01 1g94A 448 2.12e-01 b.71.1.1,c.1.8.1 65169,65170 1xx6A 191 3.31e-01 1g3qA 237 3.83e-01 1hyqA c.37.1.10 60237 1fmcA 255 4.42e-01 1cydA c.2.1.2 29856 1j93A 353 4.97e-01 c.1.22.1 66454 1v98A 140 5.86e-01 1zjrA 211 6.46e-01 1m6sA 347 7.07e-01 c.67.1.1 78701 1o2dA 371 7.33e-01 e.22.1.2 86591 2d00A 109 8.03e-01 2bx6A 350 9.27e-01 1uayA 242 1.02e+00 c.2.1.2 88390 1fnlA 175 1.14e+00 2fcbA b.1.1.4,b.1.1.4 21783,21784 2bgkA 278 1.51e+00 2bz1A 196 1.72e+00 1w44A 331 1.74e+00 1aisB 200 1.76e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 1geeA 261 2.02e+00 c.2.1.2 90509 1olmA 403 2.27e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1pn0A 665 2.29e+00 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1oaa 259 2.34e+00 1oaa c.2.1.2 29829 1dqpA 230 2.38e+00 1dqnA c.61.1.1 34069 1euhA 475 2.58e+00 1euhA c.82.1.1 35369 1yymG 313 2.73e+00 1lvaA 258 2.80e+00 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1oi7A 288 2.90e+00 c.2.1.8,c.23.4.1 87049,87050 1jmkC 230 3.02e+00 c.69.1.22 71747 1o7jA 327 3.04e+00 c.88.1.1 81140 1sdsA 117 3.12e+00 d.79.3.1 105439 1ecfA 504 3.38e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 1vp4A 425 3.67e+00 1gveA 327 3.84e+00 c.1.7.1 70597 1prxA 224 4.07e+00 1prxA c.47.1.10 33076 1hw5A 210 4.16e+00 2cgpA a.4.5.4,b.82.3.2 16098,28137 2f46A 156 4.64e+00 1c6vX 81 4.68e+00 1ihvA b.34.7.1 24641 1thg 544 5.31e+00 1thg c.69.1.17 34763 1pg4A 652 6.20e+00 e.23.1.1 88067 1xbiA 120 6.33e+00 2d1sA 548 6.52e+00 1xkyA 301 6.95e+00 2fcr 173 7.25e+00 1rcf c.23.5.1 31151 1x6vA 630 7.62e+00 1srvA 145 7.62e+00 1derA c.8.5.1 30817 4pgaA 337 7.63e+00 4pgaA c.88.1.1 35565 2dexX 671 7.83e+00 1zin 217 8.52e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1y0nA 78 8.72e+00 2gtrA 261 1.00e+01 1pmi 440 1.00e+01 1pmi b.82.1.3 28114 2b99A 156 1.02e+01 1kid 203 1.05e+01 1derA c.8.5.1 30771 1twdA 256 1.07e+01 c.1.30.1 107397 1d4oA 184 1.09e+01 1d4oA c.31.1.4 31748 2gdjA 264 1.12e+01 1xn7A 78 1.16e+01 1yavA 159 1.20e+01 1pot 325 1.22e+01 1pot c.94.1.1 35807 1kkoA 413 1.23e+01 c.1.11.2,d.54.1.1 68675,68676 1ozhA 566 1.24e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1iybA 208 1.27e+01 d.124.1.1 90720 1vclA 432 1.32e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1elvA 333 1.32e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1p2fA 220 1.35e+01 a.4.6.1,c.23.1.1 87720,87721 1ymiA 334 1.36e+01 1yhpA 212 1.37e+01 2b3nA 159 1.38e+01 1k2xB 143 1.38e+01 1ugpA 203 1.39e+01 d.149.1.1 107831 1wwiA 148 1.40e+01 1jhfA 202 1.42e+01 a.4.5.2,b.87.1.1 63057,63058 2cunA 410 1.42e+01 2d93A 134 1.47e+01 1aocA 175 1.47e+01 1aocA g.17.1.5 44817 1rzsA 61 1.49e+01 a.35.1.2 105139 1yacA 208 1.51e+01 1yacA c.33.1.3 31757 1k8kF 168 1.54e+01 d.198.2.1 68312 2rslA 140 1.55e+01 2rslA c.53.1.1 33345 1o1zA 234 1.56e+01 c.1.18.3 86555 1y1oA 203 1.59e+01 1on3A 523 1.60e+01 c.14.1.4,c.14.1.4 87107,87108 2fbiA 142 1.61e+01 2ghcX 261 1.61e+01 1lam 484 1.63e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1geqA 248 1.66e+01 2tysA c.1.2.4 28589 1hq0A 295 1.73e+01 1hzgA d.194.1.1 61122 1c1lA 136 1.75e+01 1c1lA b.29.1.3 24219 1o60A 292 1.76e+01 c.1.10.4 92532 2gukA 120 1.77e+01 1mkmA 249 1.77e+01 a.4.5.33,d.110.2.2 79242,79243 2a6qA 86 1.79e+01 2ca6A 386 1.80e+01 1bli 483 1.80e+01 1bli b.71.1.1,c.1.8.1 27715,28702 2f6uA 234 1.84e+01 1jbkA 195 1.85e+01 c.37.1.20 71631 1oq9A 363 1.87e+01 a.25.1.2 87257 1wdpA 495 1.89e+01 1cvrA 435 1.89e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 2bogX 286 1.90e+01 1x9mA 698 1.91e+01 1o97C 264 1.93e+01 c.26.2.3 81232 2gptA 523 1.93e+01 1g8sA 230 1.93e+01 c.66.1.3 90507 2gaiA 633 1.97e+01 1hl2A 297 2.00e+01 c.1.10.1 83581 1ckeA 227 2.01e+01 1ckeA c.37.1.1 31846 1bif 469 2.06e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1e6wA 260 2.07e+01 1e6wA c.2.1.2 59326 1qgdA 662 2.10e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1o69A 394 2.14e+01 c.67.1.4 92560 2c46A 241 2.17e+01 1ofdA 1520 2.24e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1yzhA 214 2.27e+01 1oeyJ 107 2.28e+01 d.15.2.2 92804 1pbjA 125 2.30e+01 d.37.1.1,d.37.1.1 94414,94415 1z15A 344 2.32e+01 1k7kA 221 2.36e+01 c.51.4.1 72104 1u5tA 233 2.38e+01 a.4.5.54,a.4.5.54 107684,107685 2cwkA 160 2.40e+01 1s58A 554 2.47e+01 b.121.5.2 105262 1lt8A 406 2.51e+01 c.1.26.1 78186 1thx 115 2.51e+01 1thx c.47.1.1 32732 1ijbA 202 2.55e+01 c.62.1.1 71229 1gx3A 284 2.57e+01 d.3.1.5 70678 1rkuA 206 2.59e+01 c.108.1.11 97627 1om1A 332 2.61e+01 d.144.1.7 93347 1v8fA 276 2.63e+01 c.26.1.4 100503 1tz9A 367 2.64e+01 c.1.15.6 107466 1v8aA 265 2.66e+01 c.72.1.2 100494 2c7pA 327 2.71e+01 1hkfA 122 2.78e+01 b.1.1.1 83553 1yc5A 246 2.80e+01 1nxuA 333 2.81e+01 c.122.1.1 86389 2fv7A 331 2.85e+01 1usgA 346 2.86e+01 c.93.1.1 99864 2c78A 405 2.89e+01 1dcjA 81 2.90e+01 1dcjA d.68.3.3 59115 1ryp2 233 2.92e+01 1ryp2 2b7nA 273 2.99e+01 1w5rA 278 3.00e+01 1knwA 425 3.02e+01 b.49.2.3,c.1.6.1 90969,90970 1ja9A 274 3.04e+01 c.2.1.2 62817 1kdoA 227 3.05e+01 c.37.1.1 68478 1m5q1 130 3.06e+01 2cw5A 255 3.07e+01 1t9bA 677 3.07e+01 1hw7A 255 3.11e+01 1i7fA d.193.1.1 61297 1wi9A 72 3.12e+01 2bhvA 246 3.16e+01 2dri 271 3.17e+01 2dri c.93.1.1 35637 1w1wE 121 3.19e+01 1zkdA 387 3.23e+01 1wkyA 464 3.23e+01 2gjgA 248 3.23e+01 1jtvA 327 3.29e+01 c.2.1.2 84230 1jfuA 186 3.29e+01 c.47.1.10 62940 1xmxA 385 3.34e+01 2fb0A 94 3.37e+01 1oafA 261 3.45e+01 a.93.1.1 86734 1lddA 74 3.56e+01 a.4.5.34 73841 1rsgA 516 3.58e+01 1pn2A 280 3.58e+01 d.38.1.4,d.38.1.4 94930,94931 2f96A 224 3.64e+01 1fviA 297 3.73e+01 1fviA b.40.4.6,d.142.2.1 25364,41578 1wgzA 510 3.85e+01 1g5bA 221 3.90e+01 1g5bA d.159.1.3 60261 1ycoA 279 3.92e+01 2b0cA 206 3.92e+01 2feaA 236 4.07e+01 1wmiA 90 4.09e+01 1gwiA 411 4.14e+01 a.104.1.1 76364 1efpB 252 4.15e+01 1efvB c.26.2.3 31636 1y7lA 316 4.21e+01 1i5gA 144 4.22e+01 1ewxA c.47.1.10 61784 1ub9A 100 4.24e+01 a.4.5.28 99159 1uxtA 501 4.33e+01 c.82.1.1 108125 1bzkA 43 4.36e+01 1bzkA j.35.1.1 46250 2f02A 323 4.44e+01 1fonA 240 4.47e+01 5ptp b.47.1.2 26231 1eiwA 111 4.53e+01 1eiwA c.23.3.1 31130 1d2fA 390 4.55e+01 1d2fA c.67.1.3 34411 2bllA 345 4.58e+01 1p4xA 250 4.59e+01 a.4.5.28,a.4.5.28 87784,87785 1m0kA 262 4.62e+01 f.13.1.1 78344 1km4A 247 4.67e+01 c.1.2.3 72740 1uc7A 125 4.69e+01 c.47.1.1 99163 2cx5A 158 4.78e+01 1h75A 81 4.81e+01 1h75A c.47.1.1 60716 1wd5A 208 4.83e+01 1x1zA 252 4.85e+01 2gcc 70 4.96e+01 2gcc d.10.1.2 37484 2bd0A 244 4.96e+01 1sy7A 715 4.98e+01 1w41A 101 5.03e+01 1xtyA 120 5.07e+01 1jli 112 5.07e+01 1jli a.26.1.2 16884 1ypqA 135 5.11e+01 1vflA 356 5.14e+01 2fyxA 143 5.15e+01 1yoeA 322 5.17e+01 1gca 309 5.17e+01 1gca c.93.1.1 35659 1d3yA 301 5.22e+01 1d3yA e.12.1.1 43252 1jl2A 156 5.22e+01 c.55.3.1 66822 1tbfA 347 5.26e+01 a.211.1.2 106743 1sflA 238 5.31e+01 1kyfA 247 5.33e+01 b.1.10.1,d.105.1.1 73220,73221 1a32 88 5.35e+01 1a32 a.16.1.2 16384 1ukkA 142 5.37e+01 d.227.1.1 99491 1b35D 57 5.43e+01 1b35D b.121.4.1 83038 1dfuP 94 5.56e+01 1dfuP b.53.1.1 26936 1zczA 464 5.59e+01 1y02A 120 5.62e+01 1hq8A 123 5.64e+01 1b6e d.169.1.1 61127 1xrtA 467 5.65e+01 1nvmA 345 5.73e+01 a.5.7.1,c.1.10.5 86249,86250 1q8yA 373 5.82e+01 d.144.1.7 96234 1ua4A 455 5.90e+01 c.72.1.3 99128 1zbqA 327 5.91e+01 1ne9A 335 5.91e+01 d.108.1.4,d.108.1.4 91839,91840 1sz7A 200 5.93e+01 1tl9A 339 5.95e+01 1qopA 268 5.95e+01 2tysA c.1.2.4 28570 1josA 128 5.99e+01 d.52.7.1 84191 1hxhA 253 6.01e+01 c.2.1.2 76725 1kuuA 202 6.01e+01 d.153.2.1 73019 2fwhA 134 6.02e+01 1yw3A 208 6.03e+01 2cfxA 144 6.03e+01 1b7yB 785 6.07e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2bolA 314 6.23e+01 2c0hA 353 6.32e+01 1r5rA 119 6.36e+01 a.39.2.1 97104 1lb3A 182 6.36e+01 a.25.1.1 77873 1erv 105 6.36e+01 1erv c.47.1.1 32743 1k0fA 277 6.36e+01 c.92.2.2 71974 1erw 105 6.39e+01 1erv c.47.1.1 32745 1fehA 574 6.40e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1k0eA 453 6.43e+01 d.161.1.1 67938 1iow 306 6.50e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1s8nA 205 6.55e+01 c.23.1.1 105374 1z2lA 423 6.58e+01 1po5A 476 6.65e+01 a.104.1.1 94963 1q7eA 428 6.67e+01 c.123.1.1 96035 2go8A 122 6.67e+01 1ukcA 522 6.77e+01 c.69.1.17 107911 2bu3A 254 6.79e+01 1zxxA 319 6.86e+01 1lj2A 110 6.89e+01 h.1.13.2 73926 1iioA 84 6.95e+01 a.39.4.1 66150 1wy2A 351 7.00e+01 1yarH 217 7.01e+01 1m65A 245 7.03e+01 c.6.3.1 84847 1squA 155 7.08e+01 d.252.1.1 98971 1g3mA 294 7.11e+01 c.37.1.5 83268 1c7qA 445 7.12e+01 2pgi c.80.1.2 35307 1w07A 659 7.13e+01 1tqnA 486 7.17e+01 a.104.1.1 107238 1ebfA 358 7.19e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1nhcA 336 7.20e+01 b.80.1.3 91879 1xm3A 264 7.25e+01 1z67A 135 7.34e+01 2b3hA 329 7.48e+01 2etvA 346 7.50e+01 1xmbA 418 7.55e+01 2b69A 343 7.56e+01 1nq7A 244 7.60e+01 a.123.1.1 92047 1ccwB 483 7.62e+01 1cb7B c.1.19.2 29646 1el6A 219 7.66e+01 1el6B d.182.1.1 42606 1qwgA 251 7.69e+01 c.1.27.1 96473 1wznA 252 7.73e+01 1vmhA 144 7.75e+01 1r5iD 216 7.82e+01 a.202.1.1 97091 1ku3A 73 7.83e+01 a.4.13.2 73000 1t5iA 172 7.85e+01 c.37.1.19 106450 1toaA 313 7.87e+01 1toaA c.92.2.2 35598 1czaN 917 7.89e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1tqxA 227 7.90e+01 1xknA 355 7.93e+01 1ihoA 283 7.94e+01 1ihoA c.26.1.4 62390 1d1gA 168 7.99e+01 1d1gA c.71.1.1 34889 1pvmA 184 7.99e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1ee4A 423 8.02e+01 1ee4A a.118.1.1 19128 1omoA 322 8.05e+01 c.2.1.13 104017 2fafA 608 8.17e+01 1j71A 334 8.24e+01 1eagA b.50.1.2 62669 1n83A 270 8.25e+01 a.123.1.1 80276 2bb6A 414 8.32e+01 1zbsA 291 8.40e+01 1uarA 285 8.47e+01 c.46.1.2,c.46.1.2 107762,107763 2b4vA 468 8.60e+01 1k8kD 300 8.62e+01 d.198.2.1,d.198.2.1 68309,68310 1dsxA 87 8.66e+01 1t1dA d.42.1.2 38644 1ex0A 731 8.68e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1whsA 255 8.71e+01 1ivyA c.69.1.5 34649 1xtmA 175 8.75e+01 1z2nX 324 8.80e+01 1aisA 182 8.90e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1hzoA 271 8.90e+01 e.3.1.1 71092 1nmeA 146 8.91e+01 c.17.1.1 85874 1u4nA 310 8.98e+01 1t62A 166 9.00e+01 b.122.1.4 106541