# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zxmA 400 1.06e+00 1xx6A 191 1.44e+00 1i5gA 144 2.46e+00 1ewxA c.47.1.10 61784 1x6mA 196 2.68e+00 2fnaA 357 2.69e+00 1vd5A 377 3.15e+00 a.102.1.7 108518 2fv1A 377 3.99e+00 1io7A 368 4.30e+00 1f4tA a.104.1.1 18971 1jubA 311 4.43e+00 c.1.4.1 90908 1q8yA 373 5.49e+00 d.144.1.7 96234 2aeuA 374 5.67e+00 1xn7A 78 5.84e+00 1zjcA 418 5.99e+00 1o97D 320 7.10e+00 c.26.2.3,c.31.1.2 81233,81234 1elvA 333 7.96e+00 5ptp b.47.1.2,g.18.1.1 59454,59455 1lddA 74 8.03e+00 a.4.5.34 73841 1m5q1 130 9.19e+00 2fcr 173 9.60e+00 1rcf c.23.5.1 31151 2bptA 861 1.02e+01 1zs9A 261 1.35e+01 1v93A 296 1.50e+01 c.1.23.1 100532 1kqfB 294 1.56e+01 d.58.1.5,f.23.22.1 75900,75901 1aisB 200 1.75e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1hh8A 213 1.78e+01 1e96B a.118.8.1 61042 1rsgA 516 1.78e+01 1odoA 408 1.79e+01 a.104.1.1 92783 2cunA 410 1.88e+01 1f60B 94 1.96e+01 1b64 d.58.12.1 39307 1u2hA 99 2.07e+01 1rzuA 485 2.09e+01 c.87.1.8 105140 1y02A 120 2.10e+01 2ff4A 388 2.15e+01 1pot 325 2.19e+01 1pot c.94.1.1 35807 1olmA 403 2.25e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1y13A 181 2.33e+01 2ab5A 269 2.35e+01 1umwA 237 2.41e+01 d.223.1.2,d.223.1.2 99631,99632 1anf 370 2.41e+01 4mbp c.94.1.1 35776 1w0pA 781 2.42e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1jfbA 404 2.43e+01 a.104.1.1 66624 1u5tA 233 2.49e+01 a.4.5.54,a.4.5.54 107684,107685 1l6sA 323 2.51e+01 c.1.10.3 73627 2afwA 329 2.54e+01 1xmkA 79 2.54e+01 1tqnA 486 2.55e+01 a.104.1.1 107238 2gtsA 86 2.58e+01 1evlA 401 2.68e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 2gu2A 312 2.73e+01 1x99A 145 2.81e+01 1ytvA 366 2.84e+01 1yirA 408 2.91e+01 1jofA 365 3.02e+01 b.69.10.1 71775 1xknA 355 3.04e+01 2ddrA 306 3.07e+01 1ec7A 446 3.11e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1pixA 587 3.18e+01 c.14.1.4 94708 1up8A 598 3.19e+01 a.111.1.2 99710 1wzcA 249 3.23e+01 1kl1A 419 3.30e+01 c.67.1.4 72663 1qu9A 128 3.35e+01 1qu9A d.79.1.1 39755 1sfe 180 3.45e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1xd3A 230 3.47e+01 1nvvS 481 3.48e+01 a.117.1.1 86279 1z8gA 372 3.56e+01 1kv7A 488 3.57e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1em9A 154 3.60e+01 1d1dA a.73.1.1 18333 1squA 155 3.61e+01 d.252.1.1 98971 1gz8A 299 3.62e+01 d.144.1.7 83405 1m7vA 363 3.71e+01 d.174.1.1 78748 1euvA 221 3.75e+01 1euvA d.3.1.7 37133 1j3wA 163 3.75e+01 d.110.7.1 90833 1pswA 348 3.80e+01 c.87.1.7 88287 1yjsA 419 3.86e+01 2bh4X 134 3.87e+01 1lk5A 229 3.87e+01 c.124.1.4,d.58.40.1 73960,73961 1xt5A 135 3.95e+01 1et9A 204 4.01e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1sw5A 275 4.01e+01 c.94.1.1 106069 1vhwA 253 4.09e+01 c.56.2.1 100706 1af7 274 4.11e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 2fq4A 192 4.15e+01 1guxA 218 4.16e+01 1guxA a.74.1.3 18388 1vhvA 268 4.23e+01 c.90.1.1 100704 1bc5A 269 4.23e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1ub9A 100 4.25e+01 a.4.5.28 99159 1yk3A 210 4.28e+01 1pmnA 364 4.41e+01 d.144.1.7 94907 1nnwA 252 4.55e+01 d.159.1.5 80674 1j93A 353 4.58e+01 c.1.22.1 66454 2fg1A 158 4.64e+01 1yge 839 4.64e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1a8l 226 4.85e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1yyqA 374 4.91e+01 1ivyA 452 5.04e+01 1ivyA c.69.1.5 34654 1vhqA 232 5.16e+01 c.23.16.2 100696 1ez0A 510 5.18e+01 1eyyA c.82.1.1 35385 2cf8H 257 5.26e+01 2cvlA 124 5.38e+01 1nrjB 218 5.59e+01 c.37.1.8 86125 1aocA 175 5.66e+01 1aocA g.17.1.5 44817 2csbA 519 5.67e+01 1uk8A 282 5.68e+01 c.69.1.10 107907 1wolA 122 5.70e+01 1yhpA 212 5.73e+01 1rdfA 267 5.74e+01 c.108.1.3 104884 1pn0A 665 5.78e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2gc9A 179 5.81e+01 1zjjA 263 5.83e+01 2c43A 323 5.84e+01 1yemA 179 5.97e+01 1v7lA 163 5.98e+01 1pueE 89 6.03e+01 1awcA a.4.5.21 16165 1zczA 464 6.08e+01 1t6cA 315 6.14e+01 c.55.1.8,c.55.1.8 106558,106559 1xq6A 253 6.15e+01 1dl5A 317 6.18e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1os8A 223 6.23e+01 b.47.1.1 93481 1twyA 290 6.37e+01 1zin 217 6.38e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1lm8C 96 6.57e+01 d.42.1.1 74034 1fg7A 356 6.59e+01 1gewA c.67.1.1 59819 1sw5B 275 6.61e+01 c.94.1.1 106070 1qwrA 319 6.64e+01 b.82.1.3 96491 2f2eA 146 6.71e+01 2cxxA 190 6.74e+01 1noyA 388 6.76e+01 1clqA c.55.3.5 33713 1zgzA 122 6.82e+01 1dkiA 371 6.83e+01 1dkiA d.3.1.1 37090 2fyxA 143 6.96e+01 1fmcA 255 7.01e+01 1cydA c.2.1.2 29856 2napA 723 7.11e+01 2napA b.52.2.2,c.81.1.1 26926,35334 2bo9A 308 7.14e+01 2bg5A 324 7.24e+01 1ylmA 144 7.36e+01 2ahuA 531 7.38e+01 1j5wA 298 7.39e+01 d.104.1.1 71589 2gyqA 175 7.42e+01 1rh9A 373 7.47e+01 1wchA 315 7.52e+01 1mgtA 174 7.57e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 2fuqA 747 7.60e+01 1z15A 344 7.60e+01 2arhA 203 7.61e+01 2fo3A 125 7.69e+01 1j71A 334 7.72e+01 1eagA b.50.1.2 62669 1c7sA 858 7.75e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2fnjC 96 7.79e+01 1w7bA 339 7.79e+01 1e6bA 221 7.83e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 2bllA 345 7.84e+01 1svb 395 7.84e+01 1svb b.1.18.4,f.10.1.1 21814,43827 1vctA 205 7.85e+01 2cxnA 557 7.85e+01 2ffuA 501 7.89e+01 1o6dA 163 8.06e+01 c.116.1.3 92567 2b0lA 102 8.11e+01 1v4vA 376 8.16e+01 c.87.1.3 100313 1ga3A 113 8.30e+01 1ga3A a.26.1.2 60411 2dgkA 452 8.31e+01 1bcpF 99 8.39e+01 1prtF b.40.2.1 25142 1h8dH 260 8.46e+01 5ptp 1g61A 228 8.64e+01 1g61A d.126.1.1 41126 1ysjA 404 8.68e+01 1h0hA 977 8.73e+01 b.52.2.2,c.81.1.1 76435,76436 1ohfA 644 8.76e+01 b.121.4.8 93014 1u2eA 289 8.76e+01 1u0fA 564 8.83e+01 1vl2A 421 8.86e+01 c.26.2.1,d.210.1.1 108708,108709 1n00A 321 8.95e+01 a.65.1.1 85241 2gptA 523 8.95e+01