Best Alignments for T0356

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1fmcA/T0356-1fmcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fmcA/T0356-1fmcA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1609e+005.08e-11 1cydA c.2.1.2
1o2dA/T0356-1o2dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o2dA/T0356-1o2dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2532e+004.73e-04 e.22.1.2
2fcr/T0356-2fcr-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcr/T0356-2fcr-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2763e+002.56e-04 1rcf c.23.5.1
1o6jA/T0356-1o6jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o6jA/T0356-1o6jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3800e+008.98e-01 c.47.1.10
1xn7A/T0356-1xn7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xn7A/T0356-1xn7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6589e+007.71e-06
2gu2A/T0356-2gu2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gu2A/T0356-2gu2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1301e+002.23e-10
1obs/T0356-1obs-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1obs/T0356-1obs-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4500e+002.48e-01 1mrj d.165.1.1
1gcoA/T0356-1gcoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gcoA/T0356-1gcoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6143e+007.46e-10 1ybvA c.2.1.2
1l5jA/T0356-1l5jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1l5jA/T0356-1l5jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8169e+004.37e-12 a.118.15.1
c.8.2.1
c.83.1.1
1lvaA/T0356-1lvaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lvaA/T0356-1lvaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9767e+003.65e-09 a.4.5.35
a.4.5.35
a.4.5.35
a.4.5.35

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001