# List of top-scoring protein chains for T0356.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xx6A 191 1.19e+00 1fg4A 149 1.37e+00 1ewxA c.47.1.10 59814 1o6jA 150 1.38e+00 c.47.1.10 81089 1o81A 152 1.39e+00 c.47.1.10 81175 1oc9A 152 1.40e+00 c.47.1.10 86797 1rzoA 262 1.44e+00 1uq4A 263 2.39e+00 d.165.1.1 99777 1ift 263 2.43e+00 1mrj d.165.1.1 42211 1obs 267 2.45e+00 1mrj d.165.1.1 42213 1br5A 267 2.46e+00 1mrj d.165.1.1 42217 1i5gA 144 2.48e+00 1ewxA c.47.1.10 61784 1zb0A 268 2.48e+00 1j1mA 268 2.63e+00 d.165.1.1 90767 1uq5A 263 4.53e+00 d.165.1.1 99778 1lk5A 229 6.29e+00 c.124.1.4,d.58.40.1 73960,73961 1uarA 285 7.31e+00 c.46.1.2,c.46.1.2 107762,107763 2gf5A 191 7.37e+00 2gb3A 409 1.12e+01 1uayA 242 1.14e+01 c.2.1.2 88390 1hq8A 123 1.14e+01 1b6e d.169.1.1 61127 1g3qA 237 1.15e+01 1hyqA c.37.1.10 60237 1srvA 145 1.19e+01 1derA c.8.5.1 30817 1nhcA 336 1.25e+01 b.80.1.3 91879 1up4A 415 1.30e+01 1up6A 416 1.30e+01 c.2.1.5,d.162.1.2 107976,107977 1up7A 417 1.31e+01 1t83C 176 1.37e+01 b.1.1.4,b.1.1.4 106647,106648 1fnlA 175 1.38e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1e4jA 176 1.39e+01 2fcbA b.1.1.4,b.1.1.4 21785,21786 2et6A 604 1.48e+01 1vj2A 126 1.55e+01 b.82.1.10 100796 1yhpA 212 1.55e+01 1ehwA 162 1.95e+01 1npk d.58.6.1 39088 1ecfA 504 1.98e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1w1wA 430 2.06e+01 1snzA 344 2.17e+01 b.30.5.4 98930 1dqpA 230 2.22e+01 1dqnA c.61.1.1 34069 1zjrA 211 2.24e+01 1svuA 327 2.31e+01 c.66.1.26 106052 2c7pA 327 2.47e+01 2bisA 440 2.60e+01 1j5kA 89 2.64e+01 d.51.1.1 71565 2bboA 291 2.82e+01 2c7rA 327 3.08e+01 1elvA 333 3.12e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1wwiA 148 3.21e+01 1x18E 231 3.23e+01 1et9A 204 3.36e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1o73A 144 3.37e+01 c.47.1.10 86638 1pbtA 244 3.56e+01 c.124.1.1 94416 1ynoA 527 3.60e+01 1pi3A 528 3.60e+01 1bfd 528 3.60e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1q6zA 528 3.61e+01 2fcr 173 3.63e+01 1rcf c.23.5.1 31151 1wy0A 342 3.63e+01 2gc9A 179 3.73e+01 1wkjA 137 3.82e+01 1umwA 237 3.82e+01 d.223.1.2,d.223.1.2 99631,99632 1qexA 288 3.96e+01 1qexA b.32.1.1 24425 2c30A 321 3.96e+01 1q4kA 259 4.04e+01 d.223.1.2,d.223.1.2 95797,95798 1vl1A 232 4.13e+01 c.124.1.1 108707 1m5q1 130 4.22e+01 2czgA 433 4.23e+01 1yk9A 204 4.33e+01 1rzuA 485 4.36e+01 c.87.1.8 105140 1na7A 329 4.60e+01 d.144.1.7 91752 1ionA 243 4.68e+01 c.37.1.10 62633 2g15A 318 4.72e+01 1pjkA 334 4.82e+01 d.144.1.7 88122 1jwhA 337 4.83e+01 d.144.1.7 71913 2ac5A 316 5.08e+01 1jd9A 453 5.09e+01 b.71.1.1,c.1.8.1 77106,77107 1g94A 448 5.09e+01 b.71.1.1,c.1.8.1 65169,65170 1aqm 453 5.10e+01 1smd b.71.1.1,c.1.8.1 27717,28704 1jd7A 453 5.14e+01 b.71.1.1,c.1.8.1 77104,77105 1ymiA 334 5.17e+01 1r0pA 312 5.18e+01 d.144.1.7 96734 1hkfA 122 5.18e+01 b.1.1.1 83553 1wscA 230 5.21e+01 1fuiA 591 5.23e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1vlmA 219 5.24e+01 c.66.1.41 108836 1noyA 388 5.29e+01 1clqA c.55.3.5 33713 1khmA 89 5.43e+01 1dt4A d.51.1.1 38809 2b9lA 394 5.48e+01 1jx2B 315 5.50e+01 c.37.1.8 67404 1a32 88 5.56e+01 1a32 a.16.1.2 16384 1vl8A 267 5.85e+01 c.2.1.2 108733 1orfA 234 5.86e+01 b.47.1.2 87338 1f16A 192 5.92e+01 1f16A f.1.4.1 43400 1kxhA 448 5.97e+01 b.71.1.1,c.1.8.1 73151,73152 1w0pA 781 5.98e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1kit 757 5.98e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 2d1tA 548 6.13e+01 2d1sA 548 6.14e+01 1ckmA 330 6.19e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1cknB 330 6.22e+01 1ckmA b.40.4.6,d.142.2.3 25361,41588 1osnA 341 6.31e+01 c.37.1.1 87387 1pnsB 234 6.39e+01 i.1.1.1 88169 1ex4A 239 6.40e+01 1b9dA b.34.7.1,c.55.3.2 24627,33670 1olmA 403 6.41e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1o8xA 146 6.51e+01 c.47.1.10 86681 1xmjA 290 6.56e+01 1olmE 403 6.63e+01 a.5.3.1,b.132.1.1,c.13.1.1 104014,104015,104016 1i94B 255 6.68e+01 1fjfB c.23.15.1 61991 1fjgB 256 6.70e+01 1fjfB c.23.15.1 31400 1y7pA 223 6.73e+01 1qz9A 416 6.74e+01 c.67.1.3 96621 1qd7H 85 6.76e+01 1a32 i.1.1.3 45871 1ezkA 153 6.84e+01 1ewxA c.47.1.10 33063 1z8gA 372 6.86e+01 1u5tA 233 6.98e+01 a.4.5.54,a.4.5.54 107684,107685 1vne 609 6.99e+01 1vns a.111.1.3 19063 1xtmA 175 7.00e+01 1okdA 154 7.06e+01 c.47.1.10 93249 1cl6A 402 7.13e+01 1rom a.104.1.1 18960 1qk8A 146 7.13e+01 1ewxA c.47.1.10 33061 1gejA 403 7.14e+01 1rom a.104.1.1 18954 1rjwA 339 7.14e+01 b.35.1.2,c.2.1.1 97582,97583 1jfbA 404 7.14e+01 a.104.1.1 66624 1cmjA 402 7.16e+01 1rom a.104.1.1 18959 1ehfA 403 7.16e+01 1rom a.104.1.1 18957 1xqdA 403 7.18e+01 1ulwA 402 7.19e+01 1cmnA 402 7.19e+01 1rom a.104.1.1 18958 1ehgA 403 7.20e+01 1rom a.104.1.1 18956 1f24A 402 7.23e+01 1rom a.104.1.1 18953 1f26A 402 7.26e+01 1rom a.104.1.1 18951 1qmcA 52 7.27e+01 1ihvA b.34.7.1 24633 2f51A 118 7.28e+01 1f25A 402 7.29e+01 1rom a.104.1.1 18952 1vnf 609 7.33e+01 1vns a.111.1.3 19067 1ewxA 146 7.34e+01 1ewxA c.47.1.10 33062 1iduA 609 7.36e+01 1vns a.111.1.3 62303 1vng 609 7.38e+01 1vns a.111.1.3 19066 1vns 609 7.38e+01 1vns a.111.1.3 19061 2cqcA 95 7.44e+01 2ac3A 316 7.49e+01 1b35D 57 7.50e+01 1b35D b.121.4.1 83038 1vrgA 527 7.55e+01 1rfmA 344 8.32e+01 c.122.1.1 97385 1dhn 121 8.34e+01 1dhn d.96.1.3 40663 1sjpA 504 8.39e+01 1ijeB 90 8.51e+01 1b64 d.58.12.1 62488 1jfuA 186 8.78e+01 c.47.1.10 62940 1wd8A 670 9.00e+01 b.2.9.1,b.6.1.6,d.126.1.5 109237,109238,109239