# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zxmA 400 1.50e+00 1i5gA 144 2.28e+00 1ewxA c.47.1.10 61784 2fv1A 377 2.93e+00 2fcr 173 3.14e+00 1rcf c.23.5.1 31151 1xx6A 191 3.33e+00 1vd5A 377 3.35e+00 a.102.1.7 108518 1x6mA 196 3.83e+00 2fnaA 357 3.83e+00 1xn7A 78 4.51e+00 1kl1A 419 4.98e+00 c.67.1.4 72663 1q8yA 373 5.32e+00 d.144.1.7 96234 1yjsA 419 5.83e+00 2gu2A 312 8.06e+00 1m5q1 130 8.17e+00 1lddA 74 8.37e+00 a.4.5.34 73841 1pjzA 203 8.57e+00 c.66.1.36 94794 1wxaA 116 8.90e+00 1olmA 403 8.97e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1o6uA 403 9.55e+00 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1lk5A 229 9.67e+00 c.124.1.4,d.58.40.1 73960,73961 2ab5A 269 1.13e+01 1tw4A 125 1.38e+01 1et9A 204 1.44e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1u2hA 99 1.46e+01 2c9aA 259 1.48e+01 1o97D 320 1.53e+01 c.26.2.3,c.31.1.2 81233,81234 2afwA 329 1.54e+01 1u3nA 162 1.61e+01 1zs9A 261 1.62e+01 1rsgA 516 1.63e+01 1j08A 226 1.71e+01 c.47.1.2,c.47.1.2 83855,83856 1guxA 218 1.72e+01 1guxA a.74.1.3 18388 1j3wA 163 1.81e+01 d.110.7.1 90833 1pixA 587 1.82e+01 c.14.1.4 94708 1squA 155 1.91e+01 d.252.1.1 98971 1l6sA 323 2.09e+01 c.1.10.3 73627 1y02A 120 2.14e+01 1zjcA 418 2.21e+01 1i8jA 323 2.24e+01 1b4kA c.1.10.3 61968 1wzcA 249 2.30e+01 2aeuA 374 2.37e+01 1em9A 154 2.37e+01 1d1dA a.73.1.1 18333 2bptA 861 2.39e+01 1vr1H 261 2.42e+01 5ptp 2adcA 229 2.56e+01 2ddrA 306 2.58e+01 1jubA 311 2.59e+01 c.1.4.1 90908 2fq4A 192 2.61e+01 1p6pA 125 2.65e+01 b.60.1.2 87839 1ez0A 510 2.70e+01 1eyyA c.82.1.1 35385 1blxA 326 2.72e+01 1hcl d.144.1.7 41596 1lm8C 96 2.75e+01 d.42.1.1 74034 1qwrA 319 2.83e+01 b.82.1.3 96491 1evlA 401 2.91e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1io7A 368 2.94e+01 1f4tA a.104.1.1 18971 1up8A 598 2.96e+01 a.111.1.2 99710 1kqfB 294 2.99e+01 d.58.1.5,f.23.22.1 75900,75901 1f60B 94 3.03e+01 1b64 d.58.12.1 39307 1igrA 478 3.04e+01 1igrA c.10.2.5,c.10.2.5,g.3.9.1 30877,30878,44188 1pswA 348 3.07e+01 c.87.1.7 88287 1wolA 122 3.07e+01 1yw4A 341 3.11e+01 1v93A 296 3.13e+01 c.1.23.1 100532 1o5oA 221 3.22e+01 c.61.1.1 92509 1k9sA 237 3.27e+01 c.56.2.1 68359 1t6nA 220 3.44e+01 c.37.1.19 106576 1qf6A 642 3.45e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1vlpA 441 3.50e+01 d.41.2.2,d.41.2.3 108840,108841 1souA 194 3.70e+01 c.124.1.6 105858 1ecpA 238 3.74e+01 1ecpA c.56.2.1 33775 2fulA 178 3.74e+01 2fnjC 96 3.76e+01 1howA 373 3.81e+01 1hcl d.144.1.7 41679 1v7lA 163 4.11e+01 1o6dA 163 4.24e+01 c.116.1.3 92567 1ymmE 249 4.24e+01 1n00A 321 4.25e+01 a.65.1.1 85241 1pmnA 364 4.29e+01 d.144.1.7 94907 1qu9A 128 4.29e+01 1qu9A d.79.1.1 39755 1dorA 311 4.35e+01 2dorA c.1.4.1 28595 1af7 274 4.43e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1vhwA 253 4.49e+01 c.56.2.1 100706 1nd4A 264 4.49e+01 d.144.1.6 91815 1j71A 334 4.49e+01 1eagA b.50.1.2 62669 1m7vA 363 4.53e+01 d.174.1.1 78748 1z6aA 500 4.55e+01 1u5tA 233 4.56e+01 a.4.5.54,a.4.5.54 107684,107685 2dorA 311 4.60e+01 2dorA c.1.4.1 28593 2a38A 194 4.77e+01 1c7sA 858 4.89e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2a5yA 204 4.95e+01 2afcA 168 5.00e+01 1t6cA 315 5.07e+01 c.55.1.8,c.55.1.8 106558,106559 1dssG 333 5.07e+01 1dssG c.2.1.3,d.81.1.1 30022,39937 1xt5A 135 5.08e+01 1viuA 203 5.12e+01 d.113.1.1 100771 1z7bA 358 5.15e+01 1ji8A 111 5.17e+01 d.203.1.1 66733 1bc5A 269 5.23e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 2cunA 410 5.23e+01 1u9jA 358 5.26e+01 1gz8A 299 5.45e+01 d.144.1.7 83405 2gptA 523 5.48e+01 2fg1A 158 5.53e+01 1kdoA 227 5.57e+01 c.37.1.1 68478 2aorA 223 5.60e+01 1ub9A 100 5.67e+01 a.4.5.28 99159 2cxxA 190 5.68e+01 1nrjB 218 5.80e+01 c.37.1.8 86125 1kit 757 5.81e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 1umwA 237 5.93e+01 d.223.1.2,d.223.1.2 99631,99632 1omp 370 6.03e+01 4mbp c.94.1.1 35778 2gtsA 86 6.11e+01 1pot 325 6.13e+01 1pot c.94.1.1 35807 1pueE 89 6.20e+01 1awcA a.4.5.21 16165 1jr5A 90 6.21e+01 a.150.1.1 67113 1anf 370 6.29e+01 4mbp c.94.1.1 35776 1y5iB 512 6.32e+01 1xmkA 79 6.32e+01 1rzuA 485 6.38e+01 c.87.1.8 105140 1u8fO 335 6.61e+01 1yirA 408 6.62e+01 1hh8A 213 6.64e+01 1e96B a.118.8.1 61042 1ytvA 366 6.65e+01 1elvA 333 6.72e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1l8aA 886 6.72e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1wu4A 396 6.85e+01 2gc9A 179 6.86e+01 1w7bA 339 6.95e+01 1tqnA 486 7.01e+01 a.104.1.1 107238 1euvA 221 7.12e+01 1euvA d.3.1.7 37133 1dkiA 371 7.16e+01 1dkiA d.3.1.1 37090 1vl1A 232 7.18e+01 c.124.1.1 108707 1prtF 98 7.26e+01 1prtF b.40.2.1 25140 1deeG 54 7.28e+01 1fc2C a.8.1.1 16343 1z6mA 175 7.48e+01 1xq6A 253 7.59e+01 1yhpA 212 7.59e+01 2cf8H 257 7.60e+01 1odoA 408 7.63e+01 a.104.1.1 92783 1w0pA 781 7.69e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1ymiA 334 7.71e+01 1yymG 313 7.83e+01 4mbp 370 7.84e+01 4mbp c.94.1.1 35777 1bcpF 99 7.95e+01 1prtF b.40.2.1 25142 1a8l 226 7.95e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1z63A 500 7.95e+01 1zin 217 7.95e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1jx7A 117 8.06e+01 c.114.1.1 77195 2bllA 345 8.08e+01 1yk3A 210 8.19e+01 1t7lA 766 8.33e+01 1svb 395 8.46e+01 1svb b.1.18.4,f.10.1.1 21814,43827 1zbmA 280 8.46e+01 1gewA 356 8.49e+01 1gewA c.67.1.1 60470 1zip 217 8.51e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1iupA 282 8.53e+01 c.69.1.10 76815 1yemA 179 8.66e+01 1pbtA 244 8.74e+01 c.124.1.1 94416 2c43A 323 8.85e+01 1q16B 512 8.93e+01 d.58.1.5 95548