;  SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                              10        20        30           40     
                               |         |         |            |     
T0356 ................MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEIT...EIADRTLRA
1wqaA mgklfgtfgvrgiane---------------------------KITPEFAMKigmAFGTLLKRE


          50        60        70        80         90                 
           |         |         |         |          |                 
T0356 GG.PALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSAL.REVGKLLAFLK...........
1wqaA GRk-----------KPLVVVGRDTR----------VSGEMLkEALISGLLSVGcdvidvgiapt


        100       110       120       130       140       150       16
          |         |         |         |         |         |         
T0356 .EPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLI
1wqaA p-------------AVQWATKHFN----------------------------------------


      0       170       180       190       200             210       
      |         |         |         |         |               |       
T0356 TWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGA......LDYQEWCAAHPGE....
1wqaA ADGGAVITASHN-------------PPEYNGIKLLEPNGMGlkkereAIVEELFFK--EDfdra


                                           220           230       240
                                             |             |         |
T0356 .................................RFPVSVALGAD....PATILGAVTPVPDTLS
1wqaA kwyeigevrrediikpyieaikskvdveaikkrKPFVVVDTSNGagsl----------------


             250       260       270       280       290       300    
               |         |         |         |         |         |    
T0356 EYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVF
1wqaA TLPYLLRELGCKVITVNAQP------------------------DGY-----------------


         310       320       330        340          350       360    
           |         |         |          |            |         |    
T0356 TVTHITQREDAIYHSTYTGRPPDEPA.VLGVALNEVFVPILQKQ...FPEIVDFYLPPEGCSYR
1wqaA ----------------FPARNPEPNEe-----NLKEFMEIVKALgad----FGVAQDGDADRAV


          370          380       390       400           410          
            |            |         |         |             |          
T0356 LAV.VTIKKQY...AGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVN....ARDWND........
1wqaA FIDe---NGRFiqgDKTFALVADAVLKEKGGG-----LLVTTVATSnlld-----Diakkhgak


                     420       430       440                          
                       |         |         |                          
T0356 ..........VIWAITTRMDPARDTVLVENTPIDYLDFASP.................VSGLGS
1wqaA vmrtkvgdliVARALYE---NNGTIGGEENGGVIFPEHVLGrdgamtvakvveifaks------


             450       460       470        480       490       500   
               |         |         |          |         |         |   
T0356 .........KMGLDATNKWPGETQREWGRPIKKD.PDVVAHIDAIWDELAIFNNGKSALEHHHH
1wqaA gkkfselid--------ELPKYYQIKTKRHVEGDrHAIVNKVAEMARERGY-------------


                                                                
                                                                
T0356 HH........................................................
1wqaA --tvdttdgakiifedgwvlvrasgtepiirifseakskekaqeylnlgiellekals