;  SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                      
                                                                      
T0356 ................................................................
1sbzA mklivgmtgatgaplgvallqalrempnvethlvmskwakttieletpysardvaaladfshnp


                                        10        20        30        
                                         |         |         |        
T0356 ..........................MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEI
1sbzA adqaatissgsfrtdgmivipcsmkt------------LAGIRAG--------YADG--LVGRA


      40        50         60        70        80        90           
       |         |          |         |         |         |           
T0356 ADRTLRAGGPALLFENPKGY.SMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFL....K.
1sbzA ADVVLKEGRKLVLVPREMPLs------------------------TIHLENMLALSRMgvam-v


            100       110        120       130       140       150    
              |         |          |         |         |         |    
T0356 .....EPEPPKGFRDLFDKLPQ.FKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPED
1sbzA ppmpaFYNHPETVDDIVHHVVArVLDQFGLEHPYARR---------------------------


         160       170       180       190       200       210       2
           |         |         |         |         |         |        
T0356 AAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVS
1sbzA ----------------------------------------------------------------


      20       230       240       250       260       270       280  
       |         |         |         |         |         |         |  
T0356 VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGET
1sbzA ----------------------------------------------------------------


           290       300       310       320       330       340      
             |         |         |         |         |         |      
T0356 APEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQK
1sbzA ----------------------------------------------------------------


       350       360       370       380       390       400       410
         |         |         |         |         |         |         |
T0356 QFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDW
1sbzA ----------------------------------------------------------------


             420       430       440       450       460       470    
               |         |         |         |         |         |    
T0356 NDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKD
1sbzA ----------------------------------------------------------------


         480       490       500                    
           |         |         |                    
T0356 PDVVAHIDAIWDELAIFNNGKSALEHHHHHH...............
1sbzA -------------------------------wqglpqarnfsqene