make[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0355' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0355.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0355/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173741797 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.06908 sec, elapsed time= 6.15986 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.14907 sec, elapsed time= 6.25158 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0355 numbered 1 through 288 Created new target T0355 from T0355.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0355.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0355.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0355.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 9.04763 sec, elapsed time= 9.69611 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.37847 # GDT_score(maxd=8,maxw=2.9)= -6.93744 # GDT_score(maxd=8,maxw=3.2)= -6.64513 # GDT_score(maxd=8,maxw=3.5)= -6.40293 # GDT_score(maxd=10,maxw=3.8)= -7.12243 # GDT_score(maxd=10,maxw=4)= -6.95728 # GDT_score(maxd=10,maxw=4.2)= -6.8044 # GDT_score(maxd=12,maxw=4.3)= -7.65561 # GDT_score(maxd=12,maxw=4.5)= -7.47903 # GDT_score(maxd=12,maxw=4.7)= -7.30438 # GDT_score(maxd=14,maxw=5.2)= -7.74115 # GDT_score(maxd=14,maxw=5.5)= -7.45148 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_242435567.pdb -s /var/tmp/to_scwrl_242435567.seq -o /var/tmp/from_scwrl_242435567.pdb > /var/tmp/scwrl_242435567.log Error: can't open any of /var/tmp/from_scwrl_242435567.pdb or /var/tmp/from_scwrl_242435567_b.pdb or /var/tmp/from_scwrl_242435567_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.20486 # GDT_score(maxd=8,maxw=2.9)= -6.62127 # GDT_score(maxd=8,maxw=3.2)= -6.3586 # GDT_score(maxd=8,maxw=3.5)= -6.14096 # GDT_score(maxd=10,maxw=3.8)= -6.82723 # GDT_score(maxd=10,maxw=4)= -6.67684 # GDT_score(maxd=10,maxw=4.2)= -6.5273 # GDT_score(maxd=12,maxw=4.3)= -7.36587 # GDT_score(maxd=12,maxw=4.5)= -7.19124 # GDT_score(maxd=12,maxw=4.7)= -7.01821 # GDT_score(maxd=14,maxw=5.2)= -7.49274 # GDT_score(maxd=14,maxw=5.5)= -7.21662 # command:# request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_236732857.pdb -s /var/tmp/to_scwrl_236732857.seq -o /var/tmp/from_scwrl_236732857.pdb > /var/tmp/scwrl_236732857.log Error: can't open any of /var/tmp/from_scwrl_236732857.pdb or /var/tmp/from_scwrl_236732857_b.pdb or /var/tmp/from_scwrl_236732857_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.29167 # GDT_score(maxd=8,maxw=2.9)= -6.81631 # GDT_score(maxd=8,maxw=3.2)= -6.53535 # GDT_score(maxd=8,maxw=3.5)= -6.30256 # GDT_score(maxd=10,maxw=3.8)= -7.01332 # GDT_score(maxd=10,maxw=4)= -6.85362 # GDT_score(maxd=10,maxw=4.2)= -6.69455 # GDT_score(maxd=12,maxw=4.3)= -7.54314 # GDT_score(maxd=12,maxw=4.5)= -7.36221 # GDT_score(maxd=12,maxw=4.7)= -7.18341 # GDT_score(maxd=14,maxw=5.2)= -7.65358 # GDT_score(maxd=14,maxw=5.5)= -7.36869 # command:# request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_111477824.pdb -s /var/tmp/to_scwrl_111477824.seq -o /var/tmp/from_scwrl_111477824.pdb > /var/tmp/scwrl_111477824.log Error: can't open any of /var/tmp/from_scwrl_111477824.pdb or /var/tmp/from_scwrl_111477824_b.pdb or /var/tmp/from_scwrl_111477824_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -8.42014 # GDT_score(maxd=8,maxw=2.9)= -7.35626 # GDT_score(maxd=8,maxw=3.2)= -7.1549 # GDT_score(maxd=8,maxw=3.5)= -6.94692 # GDT_score(maxd=10,maxw=3.8)= -7.89425 # GDT_score(maxd=10,maxw=4)= -7.72523 # GDT_score(maxd=10,maxw=4.2)= -7.56807 # GDT_score(maxd=12,maxw=4.3)= -8.58234 # GDT_score(maxd=12,maxw=4.5)= -8.39471 # GDT_score(maxd=12,maxw=4.7)= -8.2148 # GDT_score(maxd=14,maxw=5.2)= -8.7171 # GDT_score(maxd=14,maxw=5.5)= -8.39559 # command:# request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_532094549.pdb -s /var/tmp/to_scwrl_532094549.seq -o /var/tmp/from_scwrl_532094549.pdb > /var/tmp/scwrl_532094549.log Error: can't open any of /var/tmp/from_scwrl_532094549.pdb or /var/tmp/from_scwrl_532094549_b.pdb or /var/tmp/from_scwrl_532094549_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.763889 # GDT_score = -6.07639 # GDT_score(maxd=8,maxw=2.9)= -5.22449 # GDT_score(maxd=8,maxw=3.2)= -5.02766 # GDT_score(maxd=8,maxw=3.5)= -4.86458 # GDT_score(maxd=10,maxw=3.8)= -5.60926 # GDT_score(maxd=10,maxw=4)= -5.48505 # GDT_score(maxd=10,maxw=4.2)= -5.37266 # GDT_score(maxd=12,maxw=4.3)= -6.18195 # GDT_score(maxd=12,maxw=4.5)= -6.04609 # GDT_score(maxd=12,maxw=4.7)= -5.91236 # GDT_score(maxd=14,maxw=5.2)= -6.35699 # GDT_score(maxd=14,maxw=5.5)= -6.14283 # command:# request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_731013062.pdb -s /var/tmp/to_scwrl_731013062.seq -o /var/tmp/from_scwrl_731013062.pdb > /var/tmp/scwrl_731013062.log Error: can't open any of /var/tmp/from_scwrl_731013062.pdb or /var/tmp/from_scwrl_731013062_b.pdb or /var/tmp/from_scwrl_731013062_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0355.try1-opt2.pdb looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -7.37847 # GDT_score(maxd=8,maxw=2.9)= -6.50298 # GDT_score(maxd=8,maxw=3.2)= -6.19358 # GDT_score(maxd=8,maxw=3.5)= -5.90441 # GDT_score(maxd=10,maxw=3.8)= -6.94903 # GDT_score(maxd=10,maxw=4)= -6.74047 # GDT_score(maxd=10,maxw=4.2)= -6.54235 # GDT_score(maxd=12,maxw=4.3)= -7.60607 # GDT_score(maxd=12,maxw=4.5)= -7.37984 # GDT_score(maxd=12,maxw=4.7)= -7.16923 # GDT_score(maxd=14,maxw=5.2)= -7.69241 # GDT_score(maxd=14,maxw=5.5)= -7.4054 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0355.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.805556 # GDT_score = -6.25 # GDT_score(maxd=8,maxw=2.9)= -5.43069 # GDT_score(maxd=8,maxw=3.2)= -5.21453 # GDT_score(maxd=8,maxw=3.5)= -5.03542 # GDT_score(maxd=10,maxw=3.8)= -5.77071 # GDT_score(maxd=10,maxw=4)= -5.63842 # GDT_score(maxd=10,maxw=4.2)= -5.51874 # GDT_score(maxd=12,maxw=4.3)= -6.32715 # GDT_score(maxd=12,maxw=4.5)= -6.18483 # GDT_score(maxd=12,maxw=4.7)= -6.04511 # GDT_score(maxd=14,maxw=5.2)= -6.50578 # GDT_score(maxd=14,maxw=5.5)= -6.28349 # command:# ReadConformPDB reading from PDB file T0355.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.850694 # GDT_score = -6.85764 # GDT_score(maxd=8,maxw=2.9)= -6.29303 # GDT_score(maxd=8,maxw=3.2)= -5.99603 # GDT_score(maxd=8,maxw=3.5)= -5.74994 # GDT_score(maxd=10,maxw=3.8)= -6.65128 # GDT_score(maxd=10,maxw=4)= -6.47497 # GDT_score(maxd=10,maxw=4.2)= -6.31544 # GDT_score(maxd=12,maxw=4.3)= -7.25208 # GDT_score(maxd=12,maxw=4.5)= -7.06865 # GDT_score(maxd=12,maxw=4.7)= -6.89507 # GDT_score(maxd=14,maxw=5.2)= -7.38083 # GDT_score(maxd=14,maxw=5.5)= -7.12976 # command:# ReadConformPDB reading from PDB file T0355.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0355.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0355.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0355.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try12-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try13-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try13-opt1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try13-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try13-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try13-opt2.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try13-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 257 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try14-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try14-opt1.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try14-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try14-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try14-opt2.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try14-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try15-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try15-opt1.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try15-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try15-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try15-opt2.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try15-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try16-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try16-opt1.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try16-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try16-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try16-opt2.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try16-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try17-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try17-opt1.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try17-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try17-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try17-opt2.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try17-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 248 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try18-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try18-opt1.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try18-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try18-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try18-opt2.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try2-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try3-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try5-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try7-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0355.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1575467997.pdb -s /var/tmp/to_scwrl_1575467997.seq -o /var/tmp/from_scwrl_1575467997.pdb > /var/tmp/scwrl_1575467997.log Error: can't open any of /var/tmp/from_scwrl_1575467997.pdb or /var/tmp/from_scwrl_1575467997_b.pdb or /var/tmp/from_scwrl_1575467997_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1273714017.pdb -s /var/tmp/to_scwrl_1273714017.seq -o /var/tmp/from_scwrl_1273714017.pdb > /var/tmp/scwrl_1273714017.log Error: can't open any of /var/tmp/from_scwrl_1273714017.pdb or /var/tmp/from_scwrl_1273714017_b.pdb or /var/tmp/from_scwrl_1273714017_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1054213014.pdb -s /var/tmp/to_scwrl_1054213014.seq -o /var/tmp/from_scwrl_1054213014.pdb > /var/tmp/scwrl_1054213014.log Error: can't open any of /var/tmp/from_scwrl_1054213014.pdb or /var/tmp/from_scwrl_1054213014_b.pdb or /var/tmp/from_scwrl_1054213014_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1333034920.pdb -s /var/tmp/to_scwrl_1333034920.seq -o /var/tmp/from_scwrl_1333034920.pdb > /var/tmp/scwrl_1333034920.log Error: can't open any of /var/tmp/from_scwrl_1333034920.pdb or /var/tmp/from_scwrl_1333034920_b.pdb or /var/tmp/from_scwrl_1333034920_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_430921164.pdb -s /var/tmp/to_scwrl_430921164.seq -o /var/tmp/from_scwrl_430921164.pdb > /var/tmp/scwrl_430921164.log Error: can't open any of /var/tmp/from_scwrl_430921164.pdb or /var/tmp/from_scwrl_430921164_b.pdb or /var/tmp/from_scwrl_430921164_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_265720702.pdb -s /var/tmp/to_scwrl_265720702.seq -o /var/tmp/from_scwrl_265720702.pdb > /var/tmp/scwrl_265720702.log Error: can't open any of /var/tmp/from_scwrl_265720702.pdb or /var/tmp/from_scwrl_265720702_b.pdb or /var/tmp/from_scwrl_265720702_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_277985020.pdb -s /var/tmp/to_scwrl_277985020.seq -o /var/tmp/from_scwrl_277985020.pdb > /var/tmp/scwrl_277985020.log Error: can't open any of /var/tmp/from_scwrl_277985020.pdb or /var/tmp/from_scwrl_277985020_b.pdb or /var/tmp/from_scwrl_277985020_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_434447453.pdb -s /var/tmp/to_scwrl_434447453.seq -o /var/tmp/from_scwrl_434447453.pdb > /var/tmp/scwrl_434447453.log Error: can't open any of /var/tmp/from_scwrl_434447453.pdb or /var/tmp/from_scwrl_434447453_b.pdb or /var/tmp/from_scwrl_434447453_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1307958562.pdb -s /var/tmp/to_scwrl_1307958562.seq -o /var/tmp/from_scwrl_1307958562.pdb > /var/tmp/scwrl_1307958562.log Error: can't open any of /var/tmp/from_scwrl_1307958562.pdb or /var/tmp/from_scwrl_1307958562_b.pdb or /var/tmp/from_scwrl_1307958562_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_19281563.pdb -s /var/tmp/to_scwrl_19281563.seq -o /var/tmp/from_scwrl_19281563.pdb > /var/tmp/scwrl_19281563.log Error: can't open any of /var/tmp/from_scwrl_19281563.pdb or /var/tmp/from_scwrl_19281563_b.pdb or /var/tmp/from_scwrl_19281563_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_130130172.pdb -s /var/tmp/to_scwrl_130130172.seq -o /var/tmp/from_scwrl_130130172.pdb > /var/tmp/scwrl_130130172.log Error: can't open any of /var/tmp/from_scwrl_130130172.pdb or /var/tmp/from_scwrl_130130172_b.pdb or /var/tmp/from_scwrl_130130172_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1117872559.pdb -s /var/tmp/to_scwrl_1117872559.seq -o /var/tmp/from_scwrl_1117872559.pdb > /var/tmp/scwrl_1117872559.log Error: can't open any of /var/tmp/from_scwrl_1117872559.pdb or /var/tmp/from_scwrl_1117872559_b.pdb or /var/tmp/from_scwrl_1117872559_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_57362015.pdb -s /var/tmp/to_scwrl_57362015.seq -o /var/tmp/from_scwrl_57362015.pdb > /var/tmp/scwrl_57362015.log Error: can't open any of /var/tmp/from_scwrl_57362015.pdb or /var/tmp/from_scwrl_57362015_b.pdb or /var/tmp/from_scwrl_57362015_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1886392076.pdb -s /var/tmp/to_scwrl_1886392076.seq -o /var/tmp/from_scwrl_1886392076.pdb > /var/tmp/scwrl_1886392076.log Error: can't open any of /var/tmp/from_scwrl_1886392076.pdb or /var/tmp/from_scwrl_1886392076_b.pdb or /var/tmp/from_scwrl_1886392076_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1126971589.pdb -s /var/tmp/to_scwrl_1126971589.seq -o /var/tmp/from_scwrl_1126971589.pdb > /var/tmp/scwrl_1126971589.log Error: can't open any of /var/tmp/from_scwrl_1126971589.pdb or /var/tmp/from_scwrl_1126971589_b.pdb or /var/tmp/from_scwrl_1126971589_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_692573442.pdb -s /var/tmp/to_scwrl_692573442.seq -o /var/tmp/from_scwrl_692573442.pdb > /var/tmp/scwrl_692573442.log Error: can't open any of /var/tmp/from_scwrl_692573442.pdb or /var/tmp/from_scwrl_692573442_b.pdb or /var/tmp/from_scwrl_692573442_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1399735053.pdb -s /var/tmp/to_scwrl_1399735053.seq -o /var/tmp/from_scwrl_1399735053.pdb > /var/tmp/scwrl_1399735053.log Error: can't open any of /var/tmp/from_scwrl_1399735053.pdb or /var/tmp/from_scwrl_1399735053_b.pdb or /var/tmp/from_scwrl_1399735053_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1127569374.pdb -s /var/tmp/to_scwrl_1127569374.seq -o /var/tmp/from_scwrl_1127569374.pdb > /var/tmp/scwrl_1127569374.log Error: can't open any of /var/tmp/from_scwrl_1127569374.pdb or /var/tmp/from_scwrl_1127569374_b.pdb or /var/tmp/from_scwrl_1127569374_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_707135014.pdb -s /var/tmp/to_scwrl_707135014.seq -o /var/tmp/from_scwrl_707135014.pdb > /var/tmp/scwrl_707135014.log Error: can't open any of /var/tmp/from_scwrl_707135014.pdb or /var/tmp/from_scwrl_707135014_b.pdb or /var/tmp/from_scwrl_707135014_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_608401827.pdb -s /var/tmp/to_scwrl_608401827.seq -o /var/tmp/from_scwrl_608401827.pdb > /var/tmp/scwrl_608401827.log Error: can't open any of /var/tmp/from_scwrl_608401827.pdb or /var/tmp/from_scwrl_608401827_b.pdb or /var/tmp/from_scwrl_608401827_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1847184180.pdb -s /var/tmp/to_scwrl_1847184180.seq -o /var/tmp/from_scwrl_1847184180.pdb > /var/tmp/scwrl_1847184180.log Error: can't open any of /var/tmp/from_scwrl_1847184180.pdb or /var/tmp/from_scwrl_1847184180_b.pdb or /var/tmp/from_scwrl_1847184180_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1811942243.pdb -s /var/tmp/to_scwrl_1811942243.seq -o /var/tmp/from_scwrl_1811942243.pdb > /var/tmp/scwrl_1811942243.log Error: can't open any of /var/tmp/from_scwrl_1811942243.pdb or /var/tmp/from_scwrl_1811942243_b.pdb or /var/tmp/from_scwrl_1811942243_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1566535077.pdb -s /var/tmp/to_scwrl_1566535077.seq -o /var/tmp/from_scwrl_1566535077.pdb > /var/tmp/scwrl_1566535077.log Error: can't open any of /var/tmp/from_scwrl_1566535077.pdb or /var/tmp/from_scwrl_1566535077_b.pdb or /var/tmp/from_scwrl_1566535077_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2010656824.pdb -s /var/tmp/to_scwrl_2010656824.seq -o /var/tmp/from_scwrl_2010656824.pdb > /var/tmp/scwrl_2010656824.log Error: can't open any of /var/tmp/from_scwrl_2010656824.pdb or /var/tmp/from_scwrl_2010656824_b.pdb or /var/tmp/from_scwrl_2010656824_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1812294265.pdb -s /var/tmp/to_scwrl_1812294265.seq -o /var/tmp/from_scwrl_1812294265.pdb > /var/tmp/scwrl_1812294265.log Error: can't open any of /var/tmp/from_scwrl_1812294265.pdb or /var/tmp/from_scwrl_1812294265_b.pdb or /var/tmp/from_scwrl_1812294265_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_615805843.pdb -s /var/tmp/to_scwrl_615805843.seq -o /var/tmp/from_scwrl_615805843.pdb > /var/tmp/scwrl_615805843.log Error: can't open any of /var/tmp/from_scwrl_615805843.pdb or /var/tmp/from_scwrl_615805843_b.pdb or /var/tmp/from_scwrl_615805843_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_105608744.pdb -s /var/tmp/to_scwrl_105608744.seq -o /var/tmp/from_scwrl_105608744.pdb > /var/tmp/scwrl_105608744.log Error: can't open any of /var/tmp/from_scwrl_105608744.pdb or /var/tmp/from_scwrl_105608744_b.pdb or /var/tmp/from_scwrl_105608744_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2049027123.pdb -s /var/tmp/to_scwrl_2049027123.seq -o /var/tmp/from_scwrl_2049027123.pdb > /var/tmp/scwrl_2049027123.log Error: can't open any of /var/tmp/from_scwrl_2049027123.pdb or /var/tmp/from_scwrl_2049027123_b.pdb or /var/tmp/from_scwrl_2049027123_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 277 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_727283667.pdb -s /var/tmp/to_scwrl_727283667.seq -o /var/tmp/from_scwrl_727283667.pdb > /var/tmp/scwrl_727283667.log Error: can't open any of /var/tmp/from_scwrl_727283667.pdb or /var/tmp/from_scwrl_727283667_b.pdb or /var/tmp/from_scwrl_727283667_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_637703294.pdb -s /var/tmp/to_scwrl_637703294.seq -o /var/tmp/from_scwrl_637703294.pdb > /var/tmp/scwrl_637703294.log Error: can't open any of /var/tmp/from_scwrl_637703294.pdb or /var/tmp/from_scwrl_637703294_b.pdb or /var/tmp/from_scwrl_637703294_a.pdb Error: no new SCWRL conformation added # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_632556538.pdb -s /var/tmp/to_scwrl_632556538.seq -o /var/tmp/from_scwrl_632556538.pdb > /var/tmp/scwrl_632556538.log Error: can't open any of /var/tmp/from_scwrl_632556538.pdb or /var/tmp/from_scwrl_632556538_b.pdb or /var/tmp/from_scwrl_632556538_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_155268017.pdb -s /var/tmp/to_scwrl_155268017.seq -o /var/tmp/from_scwrl_155268017.pdb > /var/tmp/scwrl_155268017.log Error: can't open any of /var/tmp/from_scwrl_155268017.pdb or /var/tmp/from_scwrl_155268017_b.pdb or /var/tmp/from_scwrl_155268017_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1911417311.pdb -s /var/tmp/to_scwrl_1911417311.seq -o /var/tmp/from_scwrl_1911417311.pdb > /var/tmp/scwrl_1911417311.log Error: can't open any of /var/tmp/from_scwrl_1911417311.pdb or /var/tmp/from_scwrl_1911417311_b.pdb or /var/tmp/from_scwrl_1911417311_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1686769551.pdb -s /var/tmp/to_scwrl_1686769551.seq -o /var/tmp/from_scwrl_1686769551.pdb > /var/tmp/scwrl_1686769551.log Error: can't open any of /var/tmp/from_scwrl_1686769551.pdb or /var/tmp/from_scwrl_1686769551_b.pdb or /var/tmp/from_scwrl_1686769551_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1488302937.pdb -s /var/tmp/to_scwrl_1488302937.seq -o /var/tmp/from_scwrl_1488302937.pdb > /var/tmp/scwrl_1488302937.log Error: can't open any of /var/tmp/from_scwrl_1488302937.pdb or /var/tmp/from_scwrl_1488302937_b.pdb or /var/tmp/from_scwrl_1488302937_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_194854828.pdb -s /var/tmp/to_scwrl_194854828.seq -o /var/tmp/from_scwrl_194854828.pdb > /var/tmp/scwrl_194854828.log Error: can't open any of /var/tmp/from_scwrl_194854828.pdb or /var/tmp/from_scwrl_194854828_b.pdb or /var/tmp/from_scwrl_194854828_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1952490253.pdb -s /var/tmp/to_scwrl_1952490253.seq -o /var/tmp/from_scwrl_1952490253.pdb > /var/tmp/scwrl_1952490253.log Error: can't open any of /var/tmp/from_scwrl_1952490253.pdb or /var/tmp/from_scwrl_1952490253_b.pdb or /var/tmp/from_scwrl_1952490253_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1766287957.pdb -s /var/tmp/to_scwrl_1766287957.seq -o /var/tmp/from_scwrl_1766287957.pdb > /var/tmp/scwrl_1766287957.log Error: can't open any of /var/tmp/from_scwrl_1766287957.pdb or /var/tmp/from_scwrl_1766287957_b.pdb or /var/tmp/from_scwrl_1766287957_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_629302282.pdb -s /var/tmp/to_scwrl_629302282.seq -o /var/tmp/from_scwrl_629302282.pdb > /var/tmp/scwrl_629302282.log Error: can't open any of /var/tmp/from_scwrl_629302282.pdb or /var/tmp/from_scwrl_629302282_b.pdb or /var/tmp/from_scwrl_629302282_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1112965168.pdb -s /var/tmp/to_scwrl_1112965168.seq -o /var/tmp/from_scwrl_1112965168.pdb > /var/tmp/scwrl_1112965168.log Error: can't open any of /var/tmp/from_scwrl_1112965168.pdb or /var/tmp/from_scwrl_1112965168_b.pdb or /var/tmp/from_scwrl_1112965168_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1785569520.pdb -s /var/tmp/to_scwrl_1785569520.seq -o /var/tmp/from_scwrl_1785569520.pdb > /var/tmp/scwrl_1785569520.log Error: can't open any of /var/tmp/from_scwrl_1785569520.pdb or /var/tmp/from_scwrl_1785569520_b.pdb or /var/tmp/from_scwrl_1785569520_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_759432454.pdb -s /var/tmp/to_scwrl_759432454.seq -o /var/tmp/from_scwrl_759432454.pdb > /var/tmp/scwrl_759432454.log Error: can't open any of /var/tmp/from_scwrl_759432454.pdb or /var/tmp/from_scwrl_759432454_b.pdb or /var/tmp/from_scwrl_759432454_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_83354081.pdb -s /var/tmp/to_scwrl_83354081.seq -o /var/tmp/from_scwrl_83354081.pdb > /var/tmp/scwrl_83354081.log Error: can't open any of /var/tmp/from_scwrl_83354081.pdb or /var/tmp/from_scwrl_83354081_b.pdb or /var/tmp/from_scwrl_83354081_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1842931535.pdb -s /var/tmp/to_scwrl_1842931535.seq -o /var/tmp/from_scwrl_1842931535.pdb > /var/tmp/scwrl_1842931535.log Error: can't open any of /var/tmp/from_scwrl_1842931535.pdb or /var/tmp/from_scwrl_1842931535_b.pdb or /var/tmp/from_scwrl_1842931535_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_498340884.pdb -s /var/tmp/to_scwrl_498340884.seq -o /var/tmp/from_scwrl_498340884.pdb > /var/tmp/scwrl_498340884.log Error: can't open any of /var/tmp/from_scwrl_498340884.pdb or /var/tmp/from_scwrl_498340884_b.pdb or /var/tmp/from_scwrl_498340884_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1210325670.pdb -s /var/tmp/to_scwrl_1210325670.seq -o /var/tmp/from_scwrl_1210325670.pdb > /var/tmp/scwrl_1210325670.log Error: can't open any of /var/tmp/from_scwrl_1210325670.pdb or /var/tmp/from_scwrl_1210325670_b.pdb or /var/tmp/from_scwrl_1210325670_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_388021330.pdb -s /var/tmp/to_scwrl_388021330.seq -o /var/tmp/from_scwrl_388021330.pdb > /var/tmp/scwrl_388021330.log Error: can't open any of /var/tmp/from_scwrl_388021330.pdb or /var/tmp/from_scwrl_388021330_b.pdb or /var/tmp/from_scwrl_388021330_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1898075937.pdb -s /var/tmp/to_scwrl_1898075937.seq -o /var/tmp/from_scwrl_1898075937.pdb > /var/tmp/scwrl_1898075937.log Error: can't open any of /var/tmp/from_scwrl_1898075937.pdb or /var/tmp/from_scwrl_1898075937_b.pdb or /var/tmp/from_scwrl_1898075937_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_190411399.pdb -s /var/tmp/to_scwrl_190411399.seq -o /var/tmp/from_scwrl_190411399.pdb > /var/tmp/scwrl_190411399.log Error: can't open any of /var/tmp/from_scwrl_190411399.pdb or /var/tmp/from_scwrl_190411399_b.pdb or /var/tmp/from_scwrl_190411399_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1095156343.pdb -s /var/tmp/to_scwrl_1095156343.seq -o /var/tmp/from_scwrl_1095156343.pdb > /var/tmp/scwrl_1095156343.log Error: can't open any of /var/tmp/from_scwrl_1095156343.pdb or /var/tmp/from_scwrl_1095156343_b.pdb or /var/tmp/from_scwrl_1095156343_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_358994117.pdb -s /var/tmp/to_scwrl_358994117.seq -o /var/tmp/from_scwrl_358994117.pdb > /var/tmp/scwrl_358994117.log Error: can't open any of /var/tmp/from_scwrl_358994117.pdb or /var/tmp/from_scwrl_358994117_b.pdb or /var/tmp/from_scwrl_358994117_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2037595579.pdb -s /var/tmp/to_scwrl_2037595579.seq -o /var/tmp/from_scwrl_2037595579.pdb > /var/tmp/scwrl_2037595579.log Error: can't open any of /var/tmp/from_scwrl_2037595579.pdb or /var/tmp/from_scwrl_2037595579_b.pdb or /var/tmp/from_scwrl_2037595579_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 255 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_759614940.pdb -s /var/tmp/to_scwrl_759614940.seq -o /var/tmp/from_scwrl_759614940.pdb > /var/tmp/scwrl_759614940.log Error: can't open any of /var/tmp/from_scwrl_759614940.pdb or /var/tmp/from_scwrl_759614940_b.pdb or /var/tmp/from_scwrl_759614940_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1925529195.pdb -s /var/tmp/to_scwrl_1925529195.seq -o /var/tmp/from_scwrl_1925529195.pdb > /var/tmp/scwrl_1925529195.log Error: can't open any of /var/tmp/from_scwrl_1925529195.pdb or /var/tmp/from_scwrl_1925529195_b.pdb or /var/tmp/from_scwrl_1925529195_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1900768756.pdb -s /var/tmp/to_scwrl_1900768756.seq -o /var/tmp/from_scwrl_1900768756.pdb > /var/tmp/scwrl_1900768756.log Error: can't open any of /var/tmp/from_scwrl_1900768756.pdb or /var/tmp/from_scwrl_1900768756_b.pdb or /var/tmp/from_scwrl_1900768756_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_424425558.pdb -s /var/tmp/to_scwrl_424425558.seq -o /var/tmp/from_scwrl_424425558.pdb > /var/tmp/scwrl_424425558.log Error: can't open any of /var/tmp/from_scwrl_424425558.pdb or /var/tmp/from_scwrl_424425558_b.pdb or /var/tmp/from_scwrl_424425558_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_393851391.pdb -s /var/tmp/to_scwrl_393851391.seq -o /var/tmp/from_scwrl_393851391.pdb > /var/tmp/scwrl_393851391.log Error: can't open any of /var/tmp/from_scwrl_393851391.pdb or /var/tmp/from_scwrl_393851391_b.pdb or /var/tmp/from_scwrl_393851391_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2006377501.pdb -s /var/tmp/to_scwrl_2006377501.seq -o /var/tmp/from_scwrl_2006377501.pdb > /var/tmp/scwrl_2006377501.log Error: can't open any of /var/tmp/from_scwrl_2006377501.pdb or /var/tmp/from_scwrl_2006377501_b.pdb or /var/tmp/from_scwrl_2006377501_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_325969034.pdb -s /var/tmp/to_scwrl_325969034.seq -o /var/tmp/from_scwrl_325969034.pdb > /var/tmp/scwrl_325969034.log Error: can't open any of /var/tmp/from_scwrl_325969034.pdb or /var/tmp/from_scwrl_325969034_b.pdb or /var/tmp/from_scwrl_325969034_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1121135057.pdb -s /var/tmp/to_scwrl_1121135057.seq -o /var/tmp/from_scwrl_1121135057.pdb > /var/tmp/scwrl_1121135057.log Error: can't open any of /var/tmp/from_scwrl_1121135057.pdb or /var/tmp/from_scwrl_1121135057_b.pdb or /var/tmp/from_scwrl_1121135057_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_496597148.pdb -s /var/tmp/to_scwrl_496597148.seq -o /var/tmp/from_scwrl_496597148.pdb > /var/tmp/scwrl_496597148.log Error: can't open any of /var/tmp/from_scwrl_496597148.pdb or /var/tmp/from_scwrl_496597148_b.pdb or /var/tmp/from_scwrl_496597148_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_958525572.pdb -s /var/tmp/to_scwrl_958525572.seq -o /var/tmp/from_scwrl_958525572.pdb > /var/tmp/scwrl_958525572.log Error: can't open any of /var/tmp/from_scwrl_958525572.pdb or /var/tmp/from_scwrl_958525572_b.pdb or /var/tmp/from_scwrl_958525572_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1276403074.pdb -s /var/tmp/to_scwrl_1276403074.seq -o /var/tmp/from_scwrl_1276403074.pdb > /var/tmp/scwrl_1276403074.log Error: can't open any of /var/tmp/from_scwrl_1276403074.pdb or /var/tmp/from_scwrl_1276403074_b.pdb or /var/tmp/from_scwrl_1276403074_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_260530812.pdb -s /var/tmp/to_scwrl_260530812.seq -o /var/tmp/from_scwrl_260530812.pdb > /var/tmp/scwrl_260530812.log Error: can't open any of /var/tmp/from_scwrl_260530812.pdb or /var/tmp/from_scwrl_260530812_b.pdb or /var/tmp/from_scwrl_260530812_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_497811477.pdb -s /var/tmp/to_scwrl_497811477.seq -o /var/tmp/from_scwrl_497811477.pdb > /var/tmp/scwrl_497811477.log Error: can't open any of /var/tmp/from_scwrl_497811477.pdb or /var/tmp/from_scwrl_497811477_b.pdb or /var/tmp/from_scwrl_497811477_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_617222365.pdb -s /var/tmp/to_scwrl_617222365.seq -o /var/tmp/from_scwrl_617222365.pdb > /var/tmp/scwrl_617222365.log Error: can't open any of /var/tmp/from_scwrl_617222365.pdb or /var/tmp/from_scwrl_617222365_b.pdb or /var/tmp/from_scwrl_617222365_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_455385641.pdb -s /var/tmp/to_scwrl_455385641.seq -o /var/tmp/from_scwrl_455385641.pdb > /var/tmp/scwrl_455385641.log Error: can't open any of /var/tmp/from_scwrl_455385641.pdb or /var/tmp/from_scwrl_455385641_b.pdb or /var/tmp/from_scwrl_455385641_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_302818083.pdb -s /var/tmp/to_scwrl_302818083.seq -o /var/tmp/from_scwrl_302818083.pdb > /var/tmp/scwrl_302818083.log Error: can't open any of /var/tmp/from_scwrl_302818083.pdb or /var/tmp/from_scwrl_302818083_b.pdb or /var/tmp/from_scwrl_302818083_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_236026675.pdb -s /var/tmp/to_scwrl_236026675.seq -o /var/tmp/from_scwrl_236026675.pdb > /var/tmp/scwrl_236026675.log Error: can't open any of /var/tmp/from_scwrl_236026675.pdb or /var/tmp/from_scwrl_236026675_b.pdb or /var/tmp/from_scwrl_236026675_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1084687922.pdb -s /var/tmp/to_scwrl_1084687922.seq -o /var/tmp/from_scwrl_1084687922.pdb > /var/tmp/scwrl_1084687922.log Error: can't open any of /var/tmp/from_scwrl_1084687922.pdb or /var/tmp/from_scwrl_1084687922_b.pdb or /var/tmp/from_scwrl_1084687922_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1415783252.pdb -s /var/tmp/to_scwrl_1415783252.seq -o /var/tmp/from_scwrl_1415783252.pdb > /var/tmp/scwrl_1415783252.log Error: can't open any of /var/tmp/from_scwrl_1415783252.pdb or /var/tmp/from_scwrl_1415783252_b.pdb or /var/tmp/from_scwrl_1415783252_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2021596195.pdb -s /var/tmp/to_scwrl_2021596195.seq -o /var/tmp/from_scwrl_2021596195.pdb > /var/tmp/scwrl_2021596195.log Error: can't open any of /var/tmp/from_scwrl_2021596195.pdb or /var/tmp/from_scwrl_2021596195_b.pdb or /var/tmp/from_scwrl_2021596195_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1844120376.pdb -s /var/tmp/to_scwrl_1844120376.seq -o /var/tmp/from_scwrl_1844120376.pdb > /var/tmp/scwrl_1844120376.log Error: can't open any of /var/tmp/from_scwrl_1844120376.pdb or /var/tmp/from_scwrl_1844120376_b.pdb or /var/tmp/from_scwrl_1844120376_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1499137333.pdb -s /var/tmp/to_scwrl_1499137333.seq -o /var/tmp/from_scwrl_1499137333.pdb > /var/tmp/scwrl_1499137333.log Error: can't open any of /var/tmp/from_scwrl_1499137333.pdb or /var/tmp/from_scwrl_1499137333_b.pdb or /var/tmp/from_scwrl_1499137333_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1717044083.pdb -s /var/tmp/to_scwrl_1717044083.seq -o /var/tmp/from_scwrl_1717044083.pdb > /var/tmp/scwrl_1717044083.log Error: can't open any of /var/tmp/from_scwrl_1717044083.pdb or /var/tmp/from_scwrl_1717044083_b.pdb or /var/tmp/from_scwrl_1717044083_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_194977613.pdb -s /var/tmp/to_scwrl_194977613.seq -o /var/tmp/from_scwrl_194977613.pdb > /var/tmp/scwrl_194977613.log Error: can't open any of /var/tmp/from_scwrl_194977613.pdb or /var/tmp/from_scwrl_194977613_b.pdb or /var/tmp/from_scwrl_194977613_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_561979358.pdb -s /var/tmp/to_scwrl_561979358.seq -o /var/tmp/from_scwrl_561979358.pdb > /var/tmp/scwrl_561979358.log Error: can't open any of /var/tmp/from_scwrl_561979358.pdb or /var/tmp/from_scwrl_561979358_b.pdb or /var/tmp/from_scwrl_561979358_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2105065413.pdb -s /var/tmp/to_scwrl_2105065413.seq -o /var/tmp/from_scwrl_2105065413.pdb > /var/tmp/scwrl_2105065413.log Error: can't open any of /var/tmp/from_scwrl_2105065413.pdb or /var/tmp/from_scwrl_2105065413_b.pdb or /var/tmp/from_scwrl_2105065413_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2093053550.pdb -s /var/tmp/to_scwrl_2093053550.seq -o /var/tmp/from_scwrl_2093053550.pdb > /var/tmp/scwrl_2093053550.log Error: can't open any of /var/tmp/from_scwrl_2093053550.pdb or /var/tmp/from_scwrl_2093053550_b.pdb or /var/tmp/from_scwrl_2093053550_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_752390757.pdb -s /var/tmp/to_scwrl_752390757.seq -o /var/tmp/from_scwrl_752390757.pdb > /var/tmp/scwrl_752390757.log Error: can't open any of /var/tmp/from_scwrl_752390757.pdb or /var/tmp/from_scwrl_752390757_b.pdb or /var/tmp/from_scwrl_752390757_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1052738110.pdb -s /var/tmp/to_scwrl_1052738110.seq -o /var/tmp/from_scwrl_1052738110.pdb > /var/tmp/scwrl_1052738110.log Error: can't open any of /var/tmp/from_scwrl_1052738110.pdb or /var/tmp/from_scwrl_1052738110_b.pdb or /var/tmp/from_scwrl_1052738110_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_304564021.pdb -s /var/tmp/to_scwrl_304564021.seq -o /var/tmp/from_scwrl_304564021.pdb > /var/tmp/scwrl_304564021.log Error: can't open any of /var/tmp/from_scwrl_304564021.pdb or /var/tmp/from_scwrl_304564021_b.pdb or /var/tmp/from_scwrl_304564021_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_642502689.pdb -s /var/tmp/to_scwrl_642502689.seq -o /var/tmp/from_scwrl_642502689.pdb > /var/tmp/scwrl_642502689.log Error: can't open any of /var/tmp/from_scwrl_642502689.pdb or /var/tmp/from_scwrl_642502689_b.pdb or /var/tmp/from_scwrl_642502689_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1812353049.pdb -s /var/tmp/to_scwrl_1812353049.seq -o /var/tmp/from_scwrl_1812353049.pdb > /var/tmp/scwrl_1812353049.log Error: can't open any of /var/tmp/from_scwrl_1812353049.pdb or /var/tmp/from_scwrl_1812353049_b.pdb or /var/tmp/from_scwrl_1812353049_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_82609569.pdb -s /var/tmp/to_scwrl_82609569.seq -o /var/tmp/from_scwrl_82609569.pdb > /var/tmp/scwrl_82609569.log Error: can't open any of /var/tmp/from_scwrl_82609569.pdb or /var/tmp/from_scwrl_82609569_b.pdb or /var/tmp/from_scwrl_82609569_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_395787798.pdb -s /var/tmp/to_scwrl_395787798.seq -o /var/tmp/from_scwrl_395787798.pdb > /var/tmp/scwrl_395787798.log Error: can't open any of /var/tmp/from_scwrl_395787798.pdb or /var/tmp/from_scwrl_395787798_b.pdb or /var/tmp/from_scwrl_395787798_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_89294960.pdb -s /var/tmp/to_scwrl_89294960.seq -o /var/tmp/from_scwrl_89294960.pdb > /var/tmp/scwrl_89294960.log Error: can't open any of /var/tmp/from_scwrl_89294960.pdb or /var/tmp/from_scwrl_89294960_b.pdb or /var/tmp/from_scwrl_89294960_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS3.pdb.gz looking for model 1 # Found a chain break before 280 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_476460960.pdb -s /var/tmp/to_scwrl_476460960.seq -o /var/tmp/from_scwrl_476460960.pdb > /var/tmp/scwrl_476460960.log Error: can't open any of /var/tmp/from_scwrl_476460960.pdb or /var/tmp/from_scwrl_476460960_b.pdb or /var/tmp/from_scwrl_476460960_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS3-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS4.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_254681652.pdb -s /var/tmp/to_scwrl_254681652.seq -o /var/tmp/from_scwrl_254681652.pdb > /var/tmp/scwrl_254681652.log Error: can't open any of /var/tmp/from_scwrl_254681652.pdb or /var/tmp/from_scwrl_254681652_b.pdb or /var/tmp/from_scwrl_254681652_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS4-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_415263995.pdb -s /var/tmp/to_scwrl_415263995.seq -o /var/tmp/from_scwrl_415263995.pdb > /var/tmp/scwrl_415263995.log Error: can't open any of /var/tmp/from_scwrl_415263995.pdb or /var/tmp/from_scwrl_415263995_b.pdb or /var/tmp/from_scwrl_415263995_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1597596017.pdb -s /var/tmp/to_scwrl_1597596017.seq -o /var/tmp/from_scwrl_1597596017.pdb > /var/tmp/scwrl_1597596017.log Error: can't open any of /var/tmp/from_scwrl_1597596017.pdb or /var/tmp/from_scwrl_1597596017_b.pdb or /var/tmp/from_scwrl_1597596017_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_751278800.pdb -s /var/tmp/to_scwrl_751278800.seq -o /var/tmp/from_scwrl_751278800.pdb > /var/tmp/scwrl_751278800.log Error: can't open any of /var/tmp/from_scwrl_751278800.pdb or /var/tmp/from_scwrl_751278800_b.pdb or /var/tmp/from_scwrl_751278800_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1373789566.pdb -s /var/tmp/to_scwrl_1373789566.seq -o /var/tmp/from_scwrl_1373789566.pdb > /var/tmp/scwrl_1373789566.log Error: can't open any of /var/tmp/from_scwrl_1373789566.pdb or /var/tmp/from_scwrl_1373789566_b.pdb or /var/tmp/from_scwrl_1373789566_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_726515445.pdb -s /var/tmp/to_scwrl_726515445.seq -o /var/tmp/from_scwrl_726515445.pdb > /var/tmp/scwrl_726515445.log Error: can't open any of /var/tmp/from_scwrl_726515445.pdb or /var/tmp/from_scwrl_726515445_b.pdb or /var/tmp/from_scwrl_726515445_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1011809613.pdb -s /var/tmp/to_scwrl_1011809613.seq -o /var/tmp/from_scwrl_1011809613.pdb > /var/tmp/scwrl_1011809613.log Error: can't open any of /var/tmp/from_scwrl_1011809613.pdb or /var/tmp/from_scwrl_1011809613_b.pdb or /var/tmp/from_scwrl_1011809613_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1871601043.pdb -s /var/tmp/to_scwrl_1871601043.seq -o /var/tmp/from_scwrl_1871601043.pdb > /var/tmp/scwrl_1871601043.log Error: can't open any of /var/tmp/from_scwrl_1871601043.pdb or /var/tmp/from_scwrl_1871601043_b.pdb or /var/tmp/from_scwrl_1871601043_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1343737809.pdb -s /var/tmp/to_scwrl_1343737809.seq -o /var/tmp/from_scwrl_1343737809.pdb > /var/tmp/scwrl_1343737809.log Error: can't open any of /var/tmp/from_scwrl_1343737809.pdb or /var/tmp/from_scwrl_1343737809_b.pdb or /var/tmp/from_scwrl_1343737809_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1467195253.pdb -s /var/tmp/to_scwrl_1467195253.seq -o /var/tmp/from_scwrl_1467195253.pdb > /var/tmp/scwrl_1467195253.log Error: can't open any of /var/tmp/from_scwrl_1467195253.pdb or /var/tmp/from_scwrl_1467195253_b.pdb or /var/tmp/from_scwrl_1467195253_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_26935480.pdb -s /var/tmp/to_scwrl_26935480.seq -o /var/tmp/from_scwrl_26935480.pdb > /var/tmp/scwrl_26935480.log Error: can't open any of /var/tmp/from_scwrl_26935480.pdb or /var/tmp/from_scwrl_26935480_b.pdb or /var/tmp/from_scwrl_26935480_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1579764484.pdb -s /var/tmp/to_scwrl_1579764484.seq -o /var/tmp/from_scwrl_1579764484.pdb > /var/tmp/scwrl_1579764484.log Error: can't open any of /var/tmp/from_scwrl_1579764484.pdb or /var/tmp/from_scwrl_1579764484_b.pdb or /var/tmp/from_scwrl_1579764484_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_404399529.pdb -s /var/tmp/to_scwrl_404399529.seq -o /var/tmp/from_scwrl_404399529.pdb > /var/tmp/scwrl_404399529.log Error: can't open any of /var/tmp/from_scwrl_404399529.pdb or /var/tmp/from_scwrl_404399529_b.pdb or /var/tmp/from_scwrl_404399529_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1442718732.pdb -s /var/tmp/to_scwrl_1442718732.seq -o /var/tmp/from_scwrl_1442718732.pdb > /var/tmp/scwrl_1442718732.log Error: can't open any of /var/tmp/from_scwrl_1442718732.pdb or /var/tmp/from_scwrl_1442718732_b.pdb or /var/tmp/from_scwrl_1442718732_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1453877032.pdb -s /var/tmp/to_scwrl_1453877032.seq -o /var/tmp/from_scwrl_1453877032.pdb > /var/tmp/scwrl_1453877032.log Error: can't open any of /var/tmp/from_scwrl_1453877032.pdb or /var/tmp/from_scwrl_1453877032_b.pdb or /var/tmp/from_scwrl_1453877032_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_101036258.pdb -s /var/tmp/to_scwrl_101036258.seq -o /var/tmp/from_scwrl_101036258.pdb > /var/tmp/scwrl_101036258.log Error: can't open any of /var/tmp/from_scwrl_101036258.pdb or /var/tmp/from_scwrl_101036258_b.pdb or /var/tmp/from_scwrl_101036258_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_794372419.pdb -s /var/tmp/to_scwrl_794372419.seq -o /var/tmp/from_scwrl_794372419.pdb > /var/tmp/scwrl_794372419.log Error: can't open any of /var/tmp/from_scwrl_794372419.pdb or /var/tmp/from_scwrl_794372419_b.pdb or /var/tmp/from_scwrl_794372419_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1023437469.pdb -s /var/tmp/to_scwrl_1023437469.seq -o /var/tmp/from_scwrl_1023437469.pdb > /var/tmp/scwrl_1023437469.log Error: can't open any of /var/tmp/from_scwrl_1023437469.pdb or /var/tmp/from_scwrl_1023437469_b.pdb or /var/tmp/from_scwrl_1023437469_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_296013872.pdb -s /var/tmp/to_scwrl_296013872.seq -o /var/tmp/from_scwrl_296013872.pdb > /var/tmp/scwrl_296013872.log Error: can't open any of /var/tmp/from_scwrl_296013872.pdb or /var/tmp/from_scwrl_296013872_b.pdb or /var/tmp/from_scwrl_296013872_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1356351776.pdb -s /var/tmp/to_scwrl_1356351776.seq -o /var/tmp/from_scwrl_1356351776.pdb > /var/tmp/scwrl_1356351776.log Error: can't open any of /var/tmp/from_scwrl_1356351776.pdb or /var/tmp/from_scwrl_1356351776_b.pdb or /var/tmp/from_scwrl_1356351776_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_981019235.pdb -s /var/tmp/to_scwrl_981019235.seq -o /var/tmp/from_scwrl_981019235.pdb > /var/tmp/scwrl_981019235.log Error: can't open any of /var/tmp/from_scwrl_981019235.pdb or /var/tmp/from_scwrl_981019235_b.pdb or /var/tmp/from_scwrl_981019235_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_241583775.pdb -s /var/tmp/to_scwrl_241583775.seq -o /var/tmp/from_scwrl_241583775.pdb > /var/tmp/scwrl_241583775.log Error: can't open any of /var/tmp/from_scwrl_241583775.pdb or /var/tmp/from_scwrl_241583775_b.pdb or /var/tmp/from_scwrl_241583775_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2108742533.pdb -s /var/tmp/to_scwrl_2108742533.seq -o /var/tmp/from_scwrl_2108742533.pdb > /var/tmp/scwrl_2108742533.log Error: can't open any of /var/tmp/from_scwrl_2108742533.pdb or /var/tmp/from_scwrl_2108742533_b.pdb or /var/tmp/from_scwrl_2108742533_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2033757344.pdb -s /var/tmp/to_scwrl_2033757344.seq -o /var/tmp/from_scwrl_2033757344.pdb > /var/tmp/scwrl_2033757344.log Error: can't open any of /var/tmp/from_scwrl_2033757344.pdb or /var/tmp/from_scwrl_2033757344_b.pdb or /var/tmp/from_scwrl_2033757344_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_546147796.pdb -s /var/tmp/to_scwrl_546147796.seq -o /var/tmp/from_scwrl_546147796.pdb > /var/tmp/scwrl_546147796.log Error: can't open any of /var/tmp/from_scwrl_546147796.pdb or /var/tmp/from_scwrl_546147796_b.pdb or /var/tmp/from_scwrl_546147796_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_603761575.pdb -s /var/tmp/to_scwrl_603761575.seq -o /var/tmp/from_scwrl_603761575.pdb > /var/tmp/scwrl_603761575.log Error: can't open any of /var/tmp/from_scwrl_603761575.pdb or /var/tmp/from_scwrl_603761575_b.pdb or /var/tmp/from_scwrl_603761575_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1698626746.pdb -s /var/tmp/to_scwrl_1698626746.seq -o /var/tmp/from_scwrl_1698626746.pdb > /var/tmp/scwrl_1698626746.log Error: can't open any of /var/tmp/from_scwrl_1698626746.pdb or /var/tmp/from_scwrl_1698626746_b.pdb or /var/tmp/from_scwrl_1698626746_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 250 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_628757365.pdb -s /var/tmp/to_scwrl_628757365.seq -o /var/tmp/from_scwrl_628757365.pdb > /var/tmp/scwrl_628757365.log Error: can't open any of /var/tmp/from_scwrl_628757365.pdb or /var/tmp/from_scwrl_628757365_b.pdb or /var/tmp/from_scwrl_628757365_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_999549374.pdb -s /var/tmp/to_scwrl_999549374.seq -o /var/tmp/from_scwrl_999549374.pdb > /var/tmp/scwrl_999549374.log Error: can't open any of /var/tmp/from_scwrl_999549374.pdb or /var/tmp/from_scwrl_999549374_b.pdb or /var/tmp/from_scwrl_999549374_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1787921706.pdb -s /var/tmp/to_scwrl_1787921706.seq -o /var/tmp/from_scwrl_1787921706.pdb > /var/tmp/scwrl_1787921706.log Error: can't open any of /var/tmp/from_scwrl_1787921706.pdb or /var/tmp/from_scwrl_1787921706_b.pdb or /var/tmp/from_scwrl_1787921706_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1105218324.pdb -s /var/tmp/to_scwrl_1105218324.seq -o /var/tmp/from_scwrl_1105218324.pdb > /var/tmp/scwrl_1105218324.log Error: can't open any of /var/tmp/from_scwrl_1105218324.pdb or /var/tmp/from_scwrl_1105218324_b.pdb or /var/tmp/from_scwrl_1105218324_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1254231025.pdb -s /var/tmp/to_scwrl_1254231025.seq -o /var/tmp/from_scwrl_1254231025.pdb > /var/tmp/scwrl_1254231025.log Error: can't open any of /var/tmp/from_scwrl_1254231025.pdb or /var/tmp/from_scwrl_1254231025_b.pdb or /var/tmp/from_scwrl_1254231025_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_55702054.pdb -s /var/tmp/to_scwrl_55702054.seq -o /var/tmp/from_scwrl_55702054.pdb > /var/tmp/scwrl_55702054.log Error: can't open any of /var/tmp/from_scwrl_55702054.pdb or /var/tmp/from_scwrl_55702054_b.pdb or /var/tmp/from_scwrl_55702054_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_555330695.pdb -s /var/tmp/to_scwrl_555330695.seq -o /var/tmp/from_scwrl_555330695.pdb > /var/tmp/scwrl_555330695.log Error: can't open any of /var/tmp/from_scwrl_555330695.pdb or /var/tmp/from_scwrl_555330695_b.pdb or /var/tmp/from_scwrl_555330695_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2005509826.pdb -s /var/tmp/to_scwrl_2005509826.seq -o /var/tmp/from_scwrl_2005509826.pdb > /var/tmp/scwrl_2005509826.log Error: can't open any of /var/tmp/from_scwrl_2005509826.pdb or /var/tmp/from_scwrl_2005509826_b.pdb or /var/tmp/from_scwrl_2005509826_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1429491621.pdb -s /var/tmp/to_scwrl_1429491621.seq -o /var/tmp/from_scwrl_1429491621.pdb > /var/tmp/scwrl_1429491621.log Error: can't open any of /var/tmp/from_scwrl_1429491621.pdb or /var/tmp/from_scwrl_1429491621_b.pdb or /var/tmp/from_scwrl_1429491621_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1281846139.pdb -s /var/tmp/to_scwrl_1281846139.seq -o /var/tmp/from_scwrl_1281846139.pdb > /var/tmp/scwrl_1281846139.log Error: can't open any of /var/tmp/from_scwrl_1281846139.pdb or /var/tmp/from_scwrl_1281846139_b.pdb or /var/tmp/from_scwrl_1281846139_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_869835792.pdb -s /var/tmp/to_scwrl_869835792.seq -o /var/tmp/from_scwrl_869835792.pdb > /var/tmp/scwrl_869835792.log Error: can't open any of /var/tmp/from_scwrl_869835792.pdb or /var/tmp/from_scwrl_869835792_b.pdb or /var/tmp/from_scwrl_869835792_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1153609017.pdb -s /var/tmp/to_scwrl_1153609017.seq -o /var/tmp/from_scwrl_1153609017.pdb > /var/tmp/scwrl_1153609017.log Error: can't open any of /var/tmp/from_scwrl_1153609017.pdb or /var/tmp/from_scwrl_1153609017_b.pdb or /var/tmp/from_scwrl_1153609017_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_478100302.pdb -s /var/tmp/to_scwrl_478100302.seq -o /var/tmp/from_scwrl_478100302.pdb > /var/tmp/scwrl_478100302.log Error: can't open any of /var/tmp/from_scwrl_478100302.pdb or /var/tmp/from_scwrl_478100302_b.pdb or /var/tmp/from_scwrl_478100302_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 269 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_189547398.pdb -s /var/tmp/to_scwrl_189547398.seq -o /var/tmp/from_scwrl_189547398.pdb > /var/tmp/scwrl_189547398.log Error: can't open any of /var/tmp/from_scwrl_189547398.pdb or /var/tmp/from_scwrl_189547398_b.pdb or /var/tmp/from_scwrl_189547398_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1180544497.pdb -s /var/tmp/to_scwrl_1180544497.seq -o /var/tmp/from_scwrl_1180544497.pdb > /var/tmp/scwrl_1180544497.log Error: can't open any of /var/tmp/from_scwrl_1180544497.pdb or /var/tmp/from_scwrl_1180544497_b.pdb or /var/tmp/from_scwrl_1180544497_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2057864786.pdb -s /var/tmp/to_scwrl_2057864786.seq -o /var/tmp/from_scwrl_2057864786.pdb > /var/tmp/scwrl_2057864786.log Error: can't open any of /var/tmp/from_scwrl_2057864786.pdb or /var/tmp/from_scwrl_2057864786_b.pdb or /var/tmp/from_scwrl_2057864786_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_593946927.pdb -s /var/tmp/to_scwrl_593946927.seq -o /var/tmp/from_scwrl_593946927.pdb > /var/tmp/scwrl_593946927.log Error: can't open any of /var/tmp/from_scwrl_593946927.pdb or /var/tmp/from_scwrl_593946927_b.pdb or /var/tmp/from_scwrl_593946927_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_475779583.pdb -s /var/tmp/to_scwrl_475779583.seq -o /var/tmp/from_scwrl_475779583.pdb > /var/tmp/scwrl_475779583.log Error: can't open any of /var/tmp/from_scwrl_475779583.pdb or /var/tmp/from_scwrl_475779583_b.pdb or /var/tmp/from_scwrl_475779583_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1364258171.pdb -s /var/tmp/to_scwrl_1364258171.seq -o /var/tmp/from_scwrl_1364258171.pdb > /var/tmp/scwrl_1364258171.log Error: can't open any of /var/tmp/from_scwrl_1364258171.pdb or /var/tmp/from_scwrl_1364258171_b.pdb or /var/tmp/from_scwrl_1364258171_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 264 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_694983185.pdb -s /var/tmp/to_scwrl_694983185.seq -o /var/tmp/from_scwrl_694983185.pdb > /var/tmp/scwrl_694983185.log Error: can't open any of /var/tmp/from_scwrl_694983185.pdb or /var/tmp/from_scwrl_694983185_b.pdb or /var/tmp/from_scwrl_694983185_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # Found a chain break before 256 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1270152002.pdb -s /var/tmp/to_scwrl_1270152002.seq -o /var/tmp/from_scwrl_1270152002.pdb > /var/tmp/scwrl_1270152002.log Error: can't open any of /var/tmp/from_scwrl_1270152002.pdb or /var/tmp/from_scwrl_1270152002_b.pdb or /var/tmp/from_scwrl_1270152002_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_240211993.pdb -s /var/tmp/to_scwrl_240211993.seq -o /var/tmp/from_scwrl_240211993.pdb > /var/tmp/scwrl_240211993.log Error: can't open any of /var/tmp/from_scwrl_240211993.pdb or /var/tmp/from_scwrl_240211993_b.pdb or /var/tmp/from_scwrl_240211993_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # Found a chain break before 272 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_990997057.pdb -s /var/tmp/to_scwrl_990997057.seq -o /var/tmp/from_scwrl_990997057.pdb > /var/tmp/scwrl_990997057.log Error: can't open any of /var/tmp/from_scwrl_990997057.pdb or /var/tmp/from_scwrl_990997057_b.pdb or /var/tmp/from_scwrl_990997057_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_479020132.pdb -s /var/tmp/to_scwrl_479020132.seq -o /var/tmp/from_scwrl_479020132.pdb > /var/tmp/scwrl_479020132.log Error: can't open any of /var/tmp/from_scwrl_479020132.pdb or /var/tmp/from_scwrl_479020132_b.pdb or /var/tmp/from_scwrl_479020132_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1221231227.pdb -s /var/tmp/to_scwrl_1221231227.seq -o /var/tmp/from_scwrl_1221231227.pdb > /var/tmp/scwrl_1221231227.log Error: can't open any of /var/tmp/from_scwrl_1221231227.pdb or /var/tmp/from_scwrl_1221231227_b.pdb or /var/tmp/from_scwrl_1221231227_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1232580832.pdb -s /var/tmp/to_scwrl_1232580832.seq -o /var/tmp/from_scwrl_1232580832.pdb > /var/tmp/scwrl_1232580832.log Error: can't open any of /var/tmp/from_scwrl_1232580832.pdb or /var/tmp/from_scwrl_1232580832_b.pdb or /var/tmp/from_scwrl_1232580832_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_440279019.pdb -s /var/tmp/to_scwrl_440279019.seq -o /var/tmp/from_scwrl_440279019.pdb > /var/tmp/scwrl_440279019.log Error: can't open any of /var/tmp/from_scwrl_440279019.pdb or /var/tmp/from_scwrl_440279019_b.pdb or /var/tmp/from_scwrl_440279019_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1107504924.pdb -s /var/tmp/to_scwrl_1107504924.seq -o /var/tmp/from_scwrl_1107504924.pdb > /var/tmp/scwrl_1107504924.log Error: can't open any of /var/tmp/from_scwrl_1107504924.pdb or /var/tmp/from_scwrl_1107504924_b.pdb or /var/tmp/from_scwrl_1107504924_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1778728628.pdb -s /var/tmp/to_scwrl_1778728628.seq -o /var/tmp/from_scwrl_1778728628.pdb > /var/tmp/scwrl_1778728628.log Error: can't open any of /var/tmp/from_scwrl_1778728628.pdb or /var/tmp/from_scwrl_1778728628_b.pdb or /var/tmp/from_scwrl_1778728628_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1044040594.pdb -s /var/tmp/to_scwrl_1044040594.seq -o /var/tmp/from_scwrl_1044040594.pdb > /var/tmp/scwrl_1044040594.log Error: can't open any of /var/tmp/from_scwrl_1044040594.pdb or /var/tmp/from_scwrl_1044040594_b.pdb or /var/tmp/from_scwrl_1044040594_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_658648024.pdb -s /var/tmp/to_scwrl_658648024.seq -o /var/tmp/from_scwrl_658648024.pdb > /var/tmp/scwrl_658648024.log Error: can't open any of /var/tmp/from_scwrl_658648024.pdb or /var/tmp/from_scwrl_658648024_b.pdb or /var/tmp/from_scwrl_658648024_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_260002347.pdb -s /var/tmp/to_scwrl_260002347.seq -o /var/tmp/from_scwrl_260002347.pdb > /var/tmp/scwrl_260002347.log Error: can't open any of /var/tmp/from_scwrl_260002347.pdb or /var/tmp/from_scwrl_260002347_b.pdb or /var/tmp/from_scwrl_260002347_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2043589967.pdb -s /var/tmp/to_scwrl_2043589967.seq -o /var/tmp/from_scwrl_2043589967.pdb > /var/tmp/scwrl_2043589967.log Error: can't open any of /var/tmp/from_scwrl_2043589967.pdb or /var/tmp/from_scwrl_2043589967_b.pdb or /var/tmp/from_scwrl_2043589967_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_299086084.pdb -s /var/tmp/to_scwrl_299086084.seq -o /var/tmp/from_scwrl_299086084.pdb > /var/tmp/scwrl_299086084.log Error: can't open any of /var/tmp/from_scwrl_299086084.pdb or /var/tmp/from_scwrl_299086084_b.pdb or /var/tmp/from_scwrl_299086084_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1365220671.pdb -s /var/tmp/to_scwrl_1365220671.seq -o /var/tmp/from_scwrl_1365220671.pdb > /var/tmp/scwrl_1365220671.log Error: can't open any of /var/tmp/from_scwrl_1365220671.pdb or /var/tmp/from_scwrl_1365220671_b.pdb or /var/tmp/from_scwrl_1365220671_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1150337346.pdb -s /var/tmp/to_scwrl_1150337346.seq -o /var/tmp/from_scwrl_1150337346.pdb > /var/tmp/scwrl_1150337346.log Error: can't open any of /var/tmp/from_scwrl_1150337346.pdb or /var/tmp/from_scwrl_1150337346_b.pdb or /var/tmp/from_scwrl_1150337346_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_354788138.pdb -s /var/tmp/to_scwrl_354788138.seq -o /var/tmp/from_scwrl_354788138.pdb > /var/tmp/scwrl_354788138.log Error: can't open any of /var/tmp/from_scwrl_354788138.pdb or /var/tmp/from_scwrl_354788138_b.pdb or /var/tmp/from_scwrl_354788138_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1920551367.pdb -s /var/tmp/to_scwrl_1920551367.seq -o /var/tmp/from_scwrl_1920551367.pdb > /var/tmp/scwrl_1920551367.log Error: can't open any of /var/tmp/from_scwrl_1920551367.pdb or /var/tmp/from_scwrl_1920551367_b.pdb or /var/tmp/from_scwrl_1920551367_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1008363526.pdb -s /var/tmp/to_scwrl_1008363526.seq -o /var/tmp/from_scwrl_1008363526.pdb > /var/tmp/scwrl_1008363526.log Error: can't open any of /var/tmp/from_scwrl_1008363526.pdb or /var/tmp/from_scwrl_1008363526_b.pdb or /var/tmp/from_scwrl_1008363526_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1784279759.pdb -s /var/tmp/to_scwrl_1784279759.seq -o /var/tmp/from_scwrl_1784279759.pdb > /var/tmp/scwrl_1784279759.log Error: can't open any of /var/tmp/from_scwrl_1784279759.pdb or /var/tmp/from_scwrl_1784279759_b.pdb or /var/tmp/from_scwrl_1784279759_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1054913860.pdb -s /var/tmp/to_scwrl_1054913860.seq -o /var/tmp/from_scwrl_1054913860.pdb > /var/tmp/scwrl_1054913860.log Error: can't open any of /var/tmp/from_scwrl_1054913860.pdb or /var/tmp/from_scwrl_1054913860_b.pdb or /var/tmp/from_scwrl_1054913860_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1878199317.pdb -s /var/tmp/to_scwrl_1878199317.seq -o /var/tmp/from_scwrl_1878199317.pdb > /var/tmp/scwrl_1878199317.log Error: can't open any of /var/tmp/from_scwrl_1878199317.pdb or /var/tmp/from_scwrl_1878199317_b.pdb or /var/tmp/from_scwrl_1878199317_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_790405131.pdb -s /var/tmp/to_scwrl_790405131.seq -o /var/tmp/from_scwrl_790405131.pdb > /var/tmp/scwrl_790405131.log Error: can't open any of /var/tmp/from_scwrl_790405131.pdb or /var/tmp/from_scwrl_790405131_b.pdb or /var/tmp/from_scwrl_790405131_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1533014162.pdb -s /var/tmp/to_scwrl_1533014162.seq -o /var/tmp/from_scwrl_1533014162.pdb > /var/tmp/scwrl_1533014162.log Error: can't open any of /var/tmp/from_scwrl_1533014162.pdb or /var/tmp/from_scwrl_1533014162_b.pdb or /var/tmp/from_scwrl_1533014162_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 230 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2067746715.pdb -s /var/tmp/to_scwrl_2067746715.seq -o /var/tmp/from_scwrl_2067746715.pdb > /var/tmp/scwrl_2067746715.log Error: can't open any of /var/tmp/from_scwrl_2067746715.pdb or /var/tmp/from_scwrl_2067746715_b.pdb or /var/tmp/from_scwrl_2067746715_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1970949628.pdb -s /var/tmp/to_scwrl_1970949628.seq -o /var/tmp/from_scwrl_1970949628.pdb > /var/tmp/scwrl_1970949628.log Error: can't open any of /var/tmp/from_scwrl_1970949628.pdb or /var/tmp/from_scwrl_1970949628_b.pdb or /var/tmp/from_scwrl_1970949628_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1443395301.pdb -s /var/tmp/to_scwrl_1443395301.seq -o /var/tmp/from_scwrl_1443395301.pdb > /var/tmp/scwrl_1443395301.log Error: can't open any of /var/tmp/from_scwrl_1443395301.pdb or /var/tmp/from_scwrl_1443395301_b.pdb or /var/tmp/from_scwrl_1443395301_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_514209995.pdb -s /var/tmp/to_scwrl_514209995.seq -o /var/tmp/from_scwrl_514209995.pdb > /var/tmp/scwrl_514209995.log Error: can't open any of /var/tmp/from_scwrl_514209995.pdb or /var/tmp/from_scwrl_514209995_b.pdb or /var/tmp/from_scwrl_514209995_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_299245565.pdb -s /var/tmp/to_scwrl_299245565.seq -o /var/tmp/from_scwrl_299245565.pdb > /var/tmp/scwrl_299245565.log Error: can't open any of /var/tmp/from_scwrl_299245565.pdb or /var/tmp/from_scwrl_299245565_b.pdb or /var/tmp/from_scwrl_299245565_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_660169827.pdb -s /var/tmp/to_scwrl_660169827.seq -o /var/tmp/from_scwrl_660169827.pdb > /var/tmp/scwrl_660169827.log Error: can't open any of /var/tmp/from_scwrl_660169827.pdb or /var/tmp/from_scwrl_660169827_b.pdb or /var/tmp/from_scwrl_660169827_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1209193179.pdb -s /var/tmp/to_scwrl_1209193179.seq -o /var/tmp/from_scwrl_1209193179.pdb > /var/tmp/scwrl_1209193179.log Error: can't open any of /var/tmp/from_scwrl_1209193179.pdb or /var/tmp/from_scwrl_1209193179_b.pdb or /var/tmp/from_scwrl_1209193179_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1569397567.pdb -s /var/tmp/to_scwrl_1569397567.seq -o /var/tmp/from_scwrl_1569397567.pdb > /var/tmp/scwrl_1569397567.log Error: can't open any of /var/tmp/from_scwrl_1569397567.pdb or /var/tmp/from_scwrl_1569397567_b.pdb or /var/tmp/from_scwrl_1569397567_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_900381820.pdb -s /var/tmp/to_scwrl_900381820.seq -o /var/tmp/from_scwrl_900381820.pdb > /var/tmp/scwrl_900381820.log Error: can't open any of /var/tmp/from_scwrl_900381820.pdb or /var/tmp/from_scwrl_900381820_b.pdb or /var/tmp/from_scwrl_900381820_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_52706590.pdb -s /var/tmp/to_scwrl_52706590.seq -o /var/tmp/from_scwrl_52706590.pdb > /var/tmp/scwrl_52706590.log Error: can't open any of /var/tmp/from_scwrl_52706590.pdb or /var/tmp/from_scwrl_52706590_b.pdb or /var/tmp/from_scwrl_52706590_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2048417699.pdb -s /var/tmp/to_scwrl_2048417699.seq -o /var/tmp/from_scwrl_2048417699.pdb > /var/tmp/scwrl_2048417699.log Error: can't open any of /var/tmp/from_scwrl_2048417699.pdb or /var/tmp/from_scwrl_2048417699_b.pdb or /var/tmp/from_scwrl_2048417699_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2121613048.pdb -s /var/tmp/to_scwrl_2121613048.seq -o /var/tmp/from_scwrl_2121613048.pdb > /var/tmp/scwrl_2121613048.log Error: can't open any of /var/tmp/from_scwrl_2121613048.pdb or /var/tmp/from_scwrl_2121613048_b.pdb or /var/tmp/from_scwrl_2121613048_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1285287422.pdb -s /var/tmp/to_scwrl_1285287422.seq -o /var/tmp/from_scwrl_1285287422.pdb > /var/tmp/scwrl_1285287422.log Error: can't open any of /var/tmp/from_scwrl_1285287422.pdb or /var/tmp/from_scwrl_1285287422_b.pdb or /var/tmp/from_scwrl_1285287422_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_341213071.pdb -s /var/tmp/to_scwrl_341213071.seq -o /var/tmp/from_scwrl_341213071.pdb > /var/tmp/scwrl_341213071.log Error: can't open any of /var/tmp/from_scwrl_341213071.pdb or /var/tmp/from_scwrl_341213071_b.pdb or /var/tmp/from_scwrl_341213071_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1081634325.pdb -s /var/tmp/to_scwrl_1081634325.seq -o /var/tmp/from_scwrl_1081634325.pdb > /var/tmp/scwrl_1081634325.log Error: can't open any of /var/tmp/from_scwrl_1081634325.pdb or /var/tmp/from_scwrl_1081634325_b.pdb or /var/tmp/from_scwrl_1081634325_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_916532404.pdb -s /var/tmp/to_scwrl_916532404.seq -o /var/tmp/from_scwrl_916532404.pdb > /var/tmp/scwrl_916532404.log Error: can't open any of /var/tmp/from_scwrl_916532404.pdb or /var/tmp/from_scwrl_916532404_b.pdb or /var/tmp/from_scwrl_916532404_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1385253665.pdb -s /var/tmp/to_scwrl_1385253665.seq -o /var/tmp/from_scwrl_1385253665.pdb > /var/tmp/scwrl_1385253665.log Error: can't open any of /var/tmp/from_scwrl_1385253665.pdb or /var/tmp/from_scwrl_1385253665_b.pdb or /var/tmp/from_scwrl_1385253665_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1740282350.pdb -s /var/tmp/to_scwrl_1740282350.seq -o /var/tmp/from_scwrl_1740282350.pdb > /var/tmp/scwrl_1740282350.log Error: can't open any of /var/tmp/from_scwrl_1740282350.pdb or /var/tmp/from_scwrl_1740282350_b.pdb or /var/tmp/from_scwrl_1740282350_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1176534750.pdb -s /var/tmp/to_scwrl_1176534750.seq -o /var/tmp/from_scwrl_1176534750.pdb > /var/tmp/scwrl_1176534750.log Error: can't open any of /var/tmp/from_scwrl_1176534750.pdb or /var/tmp/from_scwrl_1176534750_b.pdb or /var/tmp/from_scwrl_1176534750_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1281359985.pdb -s /var/tmp/to_scwrl_1281359985.seq -o /var/tmp/from_scwrl_1281359985.pdb > /var/tmp/scwrl_1281359985.log Error: can't open any of /var/tmp/from_scwrl_1281359985.pdb or /var/tmp/from_scwrl_1281359985_b.pdb or /var/tmp/from_scwrl_1281359985_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2039368434.pdb -s /var/tmp/to_scwrl_2039368434.seq -o /var/tmp/from_scwrl_2039368434.pdb > /var/tmp/scwrl_2039368434.log Error: can't open any of /var/tmp/from_scwrl_2039368434.pdb or /var/tmp/from_scwrl_2039368434_b.pdb or /var/tmp/from_scwrl_2039368434_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_394271776.pdb -s /var/tmp/to_scwrl_394271776.seq -o /var/tmp/from_scwrl_394271776.pdb > /var/tmp/scwrl_394271776.log Error: can't open any of /var/tmp/from_scwrl_394271776.pdb or /var/tmp/from_scwrl_394271776_b.pdb or /var/tmp/from_scwrl_394271776_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_284213685.pdb -s /var/tmp/to_scwrl_284213685.seq -o /var/tmp/from_scwrl_284213685.pdb > /var/tmp/scwrl_284213685.log Error: can't open any of /var/tmp/from_scwrl_284213685.pdb or /var/tmp/from_scwrl_284213685_b.pdb or /var/tmp/from_scwrl_284213685_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_246672925.pdb -s /var/tmp/to_scwrl_246672925.seq -o /var/tmp/from_scwrl_246672925.pdb > /var/tmp/scwrl_246672925.log Error: can't open any of /var/tmp/from_scwrl_246672925.pdb or /var/tmp/from_scwrl_246672925_b.pdb or /var/tmp/from_scwrl_246672925_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_167339496.pdb -s /var/tmp/to_scwrl_167339496.seq -o /var/tmp/from_scwrl_167339496.pdb > /var/tmp/scwrl_167339496.log Error: can't open any of /var/tmp/from_scwrl_167339496.pdb or /var/tmp/from_scwrl_167339496_b.pdb or /var/tmp/from_scwrl_167339496_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1292577210.pdb -s /var/tmp/to_scwrl_1292577210.seq -o /var/tmp/from_scwrl_1292577210.pdb > /var/tmp/scwrl_1292577210.log Error: can't open any of /var/tmp/from_scwrl_1292577210.pdb or /var/tmp/from_scwrl_1292577210_b.pdb or /var/tmp/from_scwrl_1292577210_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2030952685.pdb -s /var/tmp/to_scwrl_2030952685.seq -o /var/tmp/from_scwrl_2030952685.pdb > /var/tmp/scwrl_2030952685.log Error: can't open any of /var/tmp/from_scwrl_2030952685.pdb or /var/tmp/from_scwrl_2030952685_b.pdb or /var/tmp/from_scwrl_2030952685_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1222253355.pdb -s /var/tmp/to_scwrl_1222253355.seq -o /var/tmp/from_scwrl_1222253355.pdb > /var/tmp/scwrl_1222253355.log Error: can't open any of /var/tmp/from_scwrl_1222253355.pdb or /var/tmp/from_scwrl_1222253355_b.pdb or /var/tmp/from_scwrl_1222253355_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1023292881.pdb -s /var/tmp/to_scwrl_1023292881.seq -o /var/tmp/from_scwrl_1023292881.pdb > /var/tmp/scwrl_1023292881.log Error: can't open any of /var/tmp/from_scwrl_1023292881.pdb or /var/tmp/from_scwrl_1023292881_b.pdb or /var/tmp/from_scwrl_1023292881_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_673874169.pdb -s /var/tmp/to_scwrl_673874169.seq -o /var/tmp/from_scwrl_673874169.pdb > /var/tmp/scwrl_673874169.log Error: can't open any of /var/tmp/from_scwrl_673874169.pdb or /var/tmp/from_scwrl_673874169_b.pdb or /var/tmp/from_scwrl_673874169_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_607783871.pdb -s /var/tmp/to_scwrl_607783871.seq -o /var/tmp/from_scwrl_607783871.pdb > /var/tmp/scwrl_607783871.log Error: can't open any of /var/tmp/from_scwrl_607783871.pdb or /var/tmp/from_scwrl_607783871_b.pdb or /var/tmp/from_scwrl_607783871_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_943555949.pdb -s /var/tmp/to_scwrl_943555949.seq -o /var/tmp/from_scwrl_943555949.pdb > /var/tmp/scwrl_943555949.log Error: can't open any of /var/tmp/from_scwrl_943555949.pdb or /var/tmp/from_scwrl_943555949_b.pdb or /var/tmp/from_scwrl_943555949_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_497340150.pdb -s /var/tmp/to_scwrl_497340150.seq -o /var/tmp/from_scwrl_497340150.pdb > /var/tmp/scwrl_497340150.log Error: can't open any of /var/tmp/from_scwrl_497340150.pdb or /var/tmp/from_scwrl_497340150_b.pdb or /var/tmp/from_scwrl_497340150_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2051179173.pdb -s /var/tmp/to_scwrl_2051179173.seq -o /var/tmp/from_scwrl_2051179173.pdb > /var/tmp/scwrl_2051179173.log Error: can't open any of /var/tmp/from_scwrl_2051179173.pdb or /var/tmp/from_scwrl_2051179173_b.pdb or /var/tmp/from_scwrl_2051179173_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1457765943.pdb -s /var/tmp/to_scwrl_1457765943.seq -o /var/tmp/from_scwrl_1457765943.pdb > /var/tmp/scwrl_1457765943.log Error: can't open any of /var/tmp/from_scwrl_1457765943.pdb or /var/tmp/from_scwrl_1457765943_b.pdb or /var/tmp/from_scwrl_1457765943_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_796585715.pdb -s /var/tmp/to_scwrl_796585715.seq -o /var/tmp/from_scwrl_796585715.pdb > /var/tmp/scwrl_796585715.log Error: can't open any of /var/tmp/from_scwrl_796585715.pdb or /var/tmp/from_scwrl_796585715_b.pdb or /var/tmp/from_scwrl_796585715_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_563865353.pdb -s /var/tmp/to_scwrl_563865353.seq -o /var/tmp/from_scwrl_563865353.pdb > /var/tmp/scwrl_563865353.log Error: can't open any of /var/tmp/from_scwrl_563865353.pdb or /var/tmp/from_scwrl_563865353_b.pdb or /var/tmp/from_scwrl_563865353_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 254 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_519475477.pdb -s /var/tmp/to_scwrl_519475477.seq -o /var/tmp/from_scwrl_519475477.pdb > /var/tmp/scwrl_519475477.log Error: can't open any of /var/tmp/from_scwrl_519475477.pdb or /var/tmp/from_scwrl_519475477_b.pdb or /var/tmp/from_scwrl_519475477_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_218499635.pdb -s /var/tmp/to_scwrl_218499635.seq -o /var/tmp/from_scwrl_218499635.pdb > /var/tmp/scwrl_218499635.log Error: can't open any of /var/tmp/from_scwrl_218499635.pdb or /var/tmp/from_scwrl_218499635_b.pdb or /var/tmp/from_scwrl_218499635_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 268 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1464247172.pdb -s /var/tmp/to_scwrl_1464247172.seq -o /var/tmp/from_scwrl_1464247172.pdb > /var/tmp/scwrl_1464247172.log Error: can't open any of /var/tmp/from_scwrl_1464247172.pdb or /var/tmp/from_scwrl_1464247172_b.pdb or /var/tmp/from_scwrl_1464247172_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 241 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_572182067.pdb -s /var/tmp/to_scwrl_572182067.seq -o /var/tmp/from_scwrl_572182067.pdb > /var/tmp/scwrl_572182067.log Error: can't open any of /var/tmp/from_scwrl_572182067.pdb or /var/tmp/from_scwrl_572182067_b.pdb or /var/tmp/from_scwrl_572182067_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_119433688.pdb -s /var/tmp/to_scwrl_119433688.seq -o /var/tmp/from_scwrl_119433688.pdb > /var/tmp/scwrl_119433688.log Error: can't open any of /var/tmp/from_scwrl_119433688.pdb or /var/tmp/from_scwrl_119433688_b.pdb or /var/tmp/from_scwrl_119433688_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 249 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1438376573.pdb -s /var/tmp/to_scwrl_1438376573.seq -o /var/tmp/from_scwrl_1438376573.pdb > /var/tmp/scwrl_1438376573.log Error: can't open any of /var/tmp/from_scwrl_1438376573.pdb or /var/tmp/from_scwrl_1438376573_b.pdb or /var/tmp/from_scwrl_1438376573_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1857469489.pdb -s /var/tmp/to_scwrl_1857469489.seq -o /var/tmp/from_scwrl_1857469489.pdb > /var/tmp/scwrl_1857469489.log Error: can't open any of /var/tmp/from_scwrl_1857469489.pdb or /var/tmp/from_scwrl_1857469489_b.pdb or /var/tmp/from_scwrl_1857469489_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_460646759.pdb -s /var/tmp/to_scwrl_460646759.seq -o /var/tmp/from_scwrl_460646759.pdb > /var/tmp/scwrl_460646759.log Error: can't open any of /var/tmp/from_scwrl_460646759.pdb or /var/tmp/from_scwrl_460646759_b.pdb or /var/tmp/from_scwrl_460646759_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_372527253.pdb -s /var/tmp/to_scwrl_372527253.seq -o /var/tmp/from_scwrl_372527253.pdb > /var/tmp/scwrl_372527253.log Error: can't open any of /var/tmp/from_scwrl_372527253.pdb or /var/tmp/from_scwrl_372527253_b.pdb or /var/tmp/from_scwrl_372527253_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 275 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_626518246.pdb -s /var/tmp/to_scwrl_626518246.seq -o /var/tmp/from_scwrl_626518246.pdb > /var/tmp/scwrl_626518246.log Error: can't open any of /var/tmp/from_scwrl_626518246.pdb or /var/tmp/from_scwrl_626518246_b.pdb or /var/tmp/from_scwrl_626518246_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 228 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1845900424.pdb -s /var/tmp/to_scwrl_1845900424.seq -o /var/tmp/from_scwrl_1845900424.pdb > /var/tmp/scwrl_1845900424.log Error: can't open any of /var/tmp/from_scwrl_1845900424.pdb or /var/tmp/from_scwrl_1845900424_b.pdb or /var/tmp/from_scwrl_1845900424_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2112809603.pdb -s /var/tmp/to_scwrl_2112809603.seq -o /var/tmp/from_scwrl_2112809603.pdb > /var/tmp/scwrl_2112809603.log Error: can't open any of /var/tmp/from_scwrl_2112809603.pdb or /var/tmp/from_scwrl_2112809603_b.pdb or /var/tmp/from_scwrl_2112809603_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1803052997.pdb -s /var/tmp/to_scwrl_1803052997.seq -o /var/tmp/from_scwrl_1803052997.pdb > /var/tmp/scwrl_1803052997.log Error: can't open any of /var/tmp/from_scwrl_1803052997.pdb or /var/tmp/from_scwrl_1803052997_b.pdb or /var/tmp/from_scwrl_1803052997_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 253 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_979776764.pdb -s /var/tmp/to_scwrl_979776764.seq -o /var/tmp/from_scwrl_979776764.pdb > /var/tmp/scwrl_979776764.log Error: can't open any of /var/tmp/from_scwrl_979776764.pdb or /var/tmp/from_scwrl_979776764_b.pdb or /var/tmp/from_scwrl_979776764_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2004694390.pdb -s /var/tmp/to_scwrl_2004694390.seq -o /var/tmp/from_scwrl_2004694390.pdb > /var/tmp/scwrl_2004694390.log Error: can't open any of /var/tmp/from_scwrl_2004694390.pdb or /var/tmp/from_scwrl_2004694390_b.pdb or /var/tmp/from_scwrl_2004694390_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_49841126.pdb -s /var/tmp/to_scwrl_49841126.seq -o /var/tmp/from_scwrl_49841126.pdb > /var/tmp/scwrl_49841126.log Error: can't open any of /var/tmp/from_scwrl_49841126.pdb or /var/tmp/from_scwrl_49841126_b.pdb or /var/tmp/from_scwrl_49841126_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1263990448.pdb -s /var/tmp/to_scwrl_1263990448.seq -o /var/tmp/from_scwrl_1263990448.pdb > /var/tmp/scwrl_1263990448.log Error: can't open any of /var/tmp/from_scwrl_1263990448.pdb or /var/tmp/from_scwrl_1263990448_b.pdb or /var/tmp/from_scwrl_1263990448_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_103883668.pdb -s /var/tmp/to_scwrl_103883668.seq -o /var/tmp/from_scwrl_103883668.pdb > /var/tmp/scwrl_103883668.log Error: can't open any of /var/tmp/from_scwrl_103883668.pdb or /var/tmp/from_scwrl_103883668_b.pdb or /var/tmp/from_scwrl_103883668_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_217180622.pdb -s /var/tmp/to_scwrl_217180622.seq -o /var/tmp/from_scwrl_217180622.pdb > /var/tmp/scwrl_217180622.log Error: can't open any of /var/tmp/from_scwrl_217180622.pdb or /var/tmp/from_scwrl_217180622_b.pdb or /var/tmp/from_scwrl_217180622_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_409084013.pdb -s /var/tmp/to_scwrl_409084013.seq -o /var/tmp/from_scwrl_409084013.pdb > /var/tmp/scwrl_409084013.log Error: can't open any of /var/tmp/from_scwrl_409084013.pdb or /var/tmp/from_scwrl_409084013_b.pdb or /var/tmp/from_scwrl_409084013_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2134836353.pdb -s /var/tmp/to_scwrl_2134836353.seq -o /var/tmp/from_scwrl_2134836353.pdb > /var/tmp/scwrl_2134836353.log Error: can't open any of /var/tmp/from_scwrl_2134836353.pdb or /var/tmp/from_scwrl_2134836353_b.pdb or /var/tmp/from_scwrl_2134836353_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1439433977.pdb -s /var/tmp/to_scwrl_1439433977.seq -o /var/tmp/from_scwrl_1439433977.pdb > /var/tmp/scwrl_1439433977.log Error: can't open any of /var/tmp/from_scwrl_1439433977.pdb or /var/tmp/from_scwrl_1439433977_b.pdb or /var/tmp/from_scwrl_1439433977_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1432376893.pdb -s /var/tmp/to_scwrl_1432376893.seq -o /var/tmp/from_scwrl_1432376893.pdb > /var/tmp/scwrl_1432376893.log Error: can't open any of /var/tmp/from_scwrl_1432376893.pdb or /var/tmp/from_scwrl_1432376893_b.pdb or /var/tmp/from_scwrl_1432376893_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_661226875.pdb -s /var/tmp/to_scwrl_661226875.seq -o /var/tmp/from_scwrl_661226875.pdb > /var/tmp/scwrl_661226875.log Error: can't open any of /var/tmp/from_scwrl_661226875.pdb or /var/tmp/from_scwrl_661226875_b.pdb or /var/tmp/from_scwrl_661226875_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2047217849.pdb -s /var/tmp/to_scwrl_2047217849.seq -o /var/tmp/from_scwrl_2047217849.pdb > /var/tmp/scwrl_2047217849.log Error: can't open any of /var/tmp/from_scwrl_2047217849.pdb or /var/tmp/from_scwrl_2047217849_b.pdb or /var/tmp/from_scwrl_2047217849_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_228449196.pdb -s /var/tmp/to_scwrl_228449196.seq -o /var/tmp/from_scwrl_228449196.pdb > /var/tmp/scwrl_228449196.log Error: can't open any of /var/tmp/from_scwrl_228449196.pdb or /var/tmp/from_scwrl_228449196_b.pdb or /var/tmp/from_scwrl_228449196_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1158567025.pdb -s /var/tmp/to_scwrl_1158567025.seq -o /var/tmp/from_scwrl_1158567025.pdb > /var/tmp/scwrl_1158567025.log Error: can't open any of /var/tmp/from_scwrl_1158567025.pdb or /var/tmp/from_scwrl_1158567025_b.pdb or /var/tmp/from_scwrl_1158567025_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 260 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1950913375.pdb -s /var/tmp/to_scwrl_1950913375.seq -o /var/tmp/from_scwrl_1950913375.pdb > /var/tmp/scwrl_1950913375.log Error: can't open any of /var/tmp/from_scwrl_1950913375.pdb or /var/tmp/from_scwrl_1950913375_b.pdb or /var/tmp/from_scwrl_1950913375_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 247 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1686215139.pdb -s /var/tmp/to_scwrl_1686215139.seq -o /var/tmp/from_scwrl_1686215139.pdb > /var/tmp/scwrl_1686215139.log Error: can't open any of /var/tmp/from_scwrl_1686215139.pdb or /var/tmp/from_scwrl_1686215139_b.pdb or /var/tmp/from_scwrl_1686215139_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1955152740.pdb -s /var/tmp/to_scwrl_1955152740.seq -o /var/tmp/from_scwrl_1955152740.pdb > /var/tmp/scwrl_1955152740.log Error: can't open any of /var/tmp/from_scwrl_1955152740.pdb or /var/tmp/from_scwrl_1955152740_b.pdb or /var/tmp/from_scwrl_1955152740_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_367295081.pdb -s /var/tmp/to_scwrl_367295081.seq -o /var/tmp/from_scwrl_367295081.pdb > /var/tmp/scwrl_367295081.log Error: can't open any of /var/tmp/from_scwrl_367295081.pdb or /var/tmp/from_scwrl_367295081_b.pdb or /var/tmp/from_scwrl_367295081_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_58206969.pdb -s /var/tmp/to_scwrl_58206969.seq -o /var/tmp/from_scwrl_58206969.pdb > /var/tmp/scwrl_58206969.log Error: can't open any of /var/tmp/from_scwrl_58206969.pdb or /var/tmp/from_scwrl_58206969_b.pdb or /var/tmp/from_scwrl_58206969_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_26168729.pdb -s /var/tmp/to_scwrl_26168729.seq -o /var/tmp/from_scwrl_26168729.pdb > /var/tmp/scwrl_26168729.log Error: can't open any of /var/tmp/from_scwrl_26168729.pdb or /var/tmp/from_scwrl_26168729_b.pdb or /var/tmp/from_scwrl_26168729_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1831542253.pdb -s /var/tmp/to_scwrl_1831542253.seq -o /var/tmp/from_scwrl_1831542253.pdb > /var/tmp/scwrl_1831542253.log Error: can't open any of /var/tmp/from_scwrl_1831542253.pdb or /var/tmp/from_scwrl_1831542253_b.pdb or /var/tmp/from_scwrl_1831542253_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_630389036.pdb -s /var/tmp/to_scwrl_630389036.seq -o /var/tmp/from_scwrl_630389036.pdb > /var/tmp/scwrl_630389036.log Error: can't open any of /var/tmp/from_scwrl_630389036.pdb or /var/tmp/from_scwrl_630389036_b.pdb or /var/tmp/from_scwrl_630389036_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_145602417.pdb -s /var/tmp/to_scwrl_145602417.seq -o /var/tmp/from_scwrl_145602417.pdb > /var/tmp/scwrl_145602417.log Error: can't open any of /var/tmp/from_scwrl_145602417.pdb or /var/tmp/from_scwrl_145602417_b.pdb or /var/tmp/from_scwrl_145602417_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1122435180.pdb -s /var/tmp/to_scwrl_1122435180.seq -o /var/tmp/from_scwrl_1122435180.pdb > /var/tmp/scwrl_1122435180.log Error: can't open any of /var/tmp/from_scwrl_1122435180.pdb or /var/tmp/from_scwrl_1122435180_b.pdb or /var/tmp/from_scwrl_1122435180_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 263 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_340374878.pdb -s /var/tmp/to_scwrl_340374878.seq -o /var/tmp/from_scwrl_340374878.pdb > /var/tmp/scwrl_340374878.log Error: can't open any of /var/tmp/from_scwrl_340374878.pdb or /var/tmp/from_scwrl_340374878_b.pdb or /var/tmp/from_scwrl_340374878_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_606249176.pdb -s /var/tmp/to_scwrl_606249176.seq -o /var/tmp/from_scwrl_606249176.pdb > /var/tmp/scwrl_606249176.log Error: can't open any of /var/tmp/from_scwrl_606249176.pdb or /var/tmp/from_scwrl_606249176_b.pdb or /var/tmp/from_scwrl_606249176_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1494962433.pdb -s /var/tmp/to_scwrl_1494962433.seq -o /var/tmp/from_scwrl_1494962433.pdb > /var/tmp/scwrl_1494962433.log Error: can't open any of /var/tmp/from_scwrl_1494962433.pdb or /var/tmp/from_scwrl_1494962433_b.pdb or /var/tmp/from_scwrl_1494962433_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 284 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_966893125.pdb -s /var/tmp/to_scwrl_966893125.seq -o /var/tmp/from_scwrl_966893125.pdb > /var/tmp/scwrl_966893125.log Error: can't open any of /var/tmp/from_scwrl_966893125.pdb or /var/tmp/from_scwrl_966893125_b.pdb or /var/tmp/from_scwrl_966893125_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 281 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_304665954.pdb -s /var/tmp/to_scwrl_304665954.seq -o /var/tmp/from_scwrl_304665954.pdb > /var/tmp/scwrl_304665954.log Error: can't open any of /var/tmp/from_scwrl_304665954.pdb or /var/tmp/from_scwrl_304665954_b.pdb or /var/tmp/from_scwrl_304665954_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1460288389.pdb -s /var/tmp/to_scwrl_1460288389.seq -o /var/tmp/from_scwrl_1460288389.pdb > /var/tmp/scwrl_1460288389.log Error: can't open any of /var/tmp/from_scwrl_1460288389.pdb or /var/tmp/from_scwrl_1460288389_b.pdb or /var/tmp/from_scwrl_1460288389_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_622462475.pdb -s /var/tmp/to_scwrl_622462475.seq -o /var/tmp/from_scwrl_622462475.pdb > /var/tmp/scwrl_622462475.log Error: can't open any of /var/tmp/from_scwrl_622462475.pdb or /var/tmp/from_scwrl_622462475_b.pdb or /var/tmp/from_scwrl_622462475_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1284442717.pdb -s /var/tmp/to_scwrl_1284442717.seq -o /var/tmp/from_scwrl_1284442717.pdb > /var/tmp/scwrl_1284442717.log Error: can't open any of /var/tmp/from_scwrl_1284442717.pdb or /var/tmp/from_scwrl_1284442717_b.pdb or /var/tmp/from_scwrl_1284442717_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1317499132.pdb -s /var/tmp/to_scwrl_1317499132.seq -o /var/tmp/from_scwrl_1317499132.pdb > /var/tmp/scwrl_1317499132.log Error: can't open any of /var/tmp/from_scwrl_1317499132.pdb or /var/tmp/from_scwrl_1317499132_b.pdb or /var/tmp/from_scwrl_1317499132_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_672303601.pdb -s /var/tmp/to_scwrl_672303601.seq -o /var/tmp/from_scwrl_672303601.pdb > /var/tmp/scwrl_672303601.log Error: can't open any of /var/tmp/from_scwrl_672303601.pdb or /var/tmp/from_scwrl_672303601_b.pdb or /var/tmp/from_scwrl_672303601_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_400949519.pdb -s /var/tmp/to_scwrl_400949519.seq -o /var/tmp/from_scwrl_400949519.pdb > /var/tmp/scwrl_400949519.log Error: can't open any of /var/tmp/from_scwrl_400949519.pdb or /var/tmp/from_scwrl_400949519_b.pdb or /var/tmp/from_scwrl_400949519_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1421382800.pdb -s /var/tmp/to_scwrl_1421382800.seq -o /var/tmp/from_scwrl_1421382800.pdb > /var/tmp/scwrl_1421382800.log Error: can't open any of /var/tmp/from_scwrl_1421382800.pdb or /var/tmp/from_scwrl_1421382800_b.pdb or /var/tmp/from_scwrl_1421382800_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_889484223.pdb -s /var/tmp/to_scwrl_889484223.seq -o /var/tmp/from_scwrl_889484223.pdb > /var/tmp/scwrl_889484223.log Error: can't open any of /var/tmp/from_scwrl_889484223.pdb or /var/tmp/from_scwrl_889484223_b.pdb or /var/tmp/from_scwrl_889484223_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_810033532.pdb -s /var/tmp/to_scwrl_810033532.seq -o /var/tmp/from_scwrl_810033532.pdb > /var/tmp/scwrl_810033532.log Error: can't open any of /var/tmp/from_scwrl_810033532.pdb or /var/tmp/from_scwrl_810033532_b.pdb or /var/tmp/from_scwrl_810033532_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1408735507.pdb -s /var/tmp/to_scwrl_1408735507.seq -o /var/tmp/from_scwrl_1408735507.pdb > /var/tmp/scwrl_1408735507.log Error: can't open any of /var/tmp/from_scwrl_1408735507.pdb or /var/tmp/from_scwrl_1408735507_b.pdb or /var/tmp/from_scwrl_1408735507_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 246 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_181434553.pdb -s /var/tmp/to_scwrl_181434553.seq -o /var/tmp/from_scwrl_181434553.pdb > /var/tmp/scwrl_181434553.log Error: can't open any of /var/tmp/from_scwrl_181434553.pdb or /var/tmp/from_scwrl_181434553_b.pdb or /var/tmp/from_scwrl_181434553_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 117 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_94926779.pdb -s /var/tmp/to_scwrl_94926779.seq -o /var/tmp/from_scwrl_94926779.pdb > /var/tmp/scwrl_94926779.log Error: can't open any of /var/tmp/from_scwrl_94926779.pdb or /var/tmp/from_scwrl_94926779_b.pdb or /var/tmp/from_scwrl_94926779_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2069962382.pdb -s /var/tmp/to_scwrl_2069962382.seq -o /var/tmp/from_scwrl_2069962382.pdb > /var/tmp/scwrl_2069962382.log Error: can't open any of /var/tmp/from_scwrl_2069962382.pdb or /var/tmp/from_scwrl_2069962382_b.pdb or /var/tmp/from_scwrl_2069962382_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 134 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_81168755.pdb -s /var/tmp/to_scwrl_81168755.seq -o /var/tmp/from_scwrl_81168755.pdb > /var/tmp/scwrl_81168755.log Error: can't open any of /var/tmp/from_scwrl_81168755.pdb or /var/tmp/from_scwrl_81168755_b.pdb or /var/tmp/from_scwrl_81168755_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 245 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_323375975.pdb -s /var/tmp/to_scwrl_323375975.seq -o /var/tmp/from_scwrl_323375975.pdb > /var/tmp/scwrl_323375975.log Error: can't open any of /var/tmp/from_scwrl_323375975.pdb or /var/tmp/from_scwrl_323375975_b.pdb or /var/tmp/from_scwrl_323375975_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_1081045760.pdb -s /var/tmp/to_scwrl_1081045760.seq -o /var/tmp/from_scwrl_1081045760.pdb > /var/tmp/scwrl_1081045760.log Error: can't open any of /var/tmp/from_scwrl_1081045760.pdb or /var/tmp/from_scwrl_1081045760_b.pdb or /var/tmp/from_scwrl_1081045760_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2032082130.pdb -s /var/tmp/to_scwrl_2032082130.seq -o /var/tmp/from_scwrl_2032082130.pdb > /var/tmp/scwrl_2032082130.log Error: can't open any of /var/tmp/from_scwrl_2032082130.pdb or /var/tmp/from_scwrl_2032082130_b.pdb or /var/tmp/from_scwrl_2032082130_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2009591114.pdb -s /var/tmp/to_scwrl_2009591114.seq -o /var/tmp/from_scwrl_2009591114.pdb > /var/tmp/scwrl_2009591114.log Error: can't open any of /var/tmp/from_scwrl_2009591114.pdb or /var/tmp/from_scwrl_2009591114_b.pdb or /var/tmp/from_scwrl_2009591114_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_888714855.pdb -s /var/tmp/to_scwrl_888714855.seq -o /var/tmp/from_scwrl_888714855.pdb > /var/tmp/scwrl_888714855.log Error: can't open any of /var/tmp/from_scwrl_888714855.pdb or /var/tmp/from_scwrl_888714855_b.pdb or /var/tmp/from_scwrl_888714855_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_251893564.pdb -s /var/tmp/to_scwrl_251893564.seq -o /var/tmp/from_scwrl_251893564.pdb > /var/tmp/scwrl_251893564.log Error: can't open any of /var/tmp/from_scwrl_251893564.pdb or /var/tmp/from_scwrl_251893564_b.pdb or /var/tmp/from_scwrl_251893564_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2067798084.pdb -s /var/tmp/to_scwrl_2067798084.seq -o /var/tmp/from_scwrl_2067798084.pdb > /var/tmp/scwrl_2067798084.log Error: can't open any of /var/tmp/from_scwrl_2067798084.pdb or /var/tmp/from_scwrl_2067798084_b.pdb or /var/tmp/from_scwrl_2067798084_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_914883584.pdb -s /var/tmp/to_scwrl_914883584.seq -o /var/tmp/from_scwrl_914883584.pdb > /var/tmp/scwrl_914883584.log Error: can't open any of /var/tmp/from_scwrl_914883584.pdb or /var/tmp/from_scwrl_914883584_b.pdb or /var/tmp/from_scwrl_914883584_a.pdb Error: no new SCWRL conformation added # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0355 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_2083435818.pdb -s /var/tmp/to_scwrl_2083435818.seq -o /var/tmp/from_scwrl_2083435818.pdb > /var/tmp/scwrl_2083435818.log Error: can't open any of /var/tmp/from_scwrl_2083435818.pdb or /var/tmp/from_scwrl_2083435818_b.pdb or /var/tmp/from_scwrl_2083435818_a.pdb Error: no new SCWRL conformation added # naming current conformation panther3_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 260 ; scwrl -i /var/tmp/to_scwrl_550703473.pdb -s /var/tmp/to_scwrl_550703473.seq -o /var/tmp/from_scwrl_550703473.pdb > /var/tmp/scwrl_550703473.log Error: can't open any of /var/tmp/from_scwrl_550703473.pdb or /var/tmp/from_scwrl_550703473_b.pdb or /var/tmp/from_scwrl_550703473_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 71.5531 sec, elapsed time= 91.8587 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 423.029 real_cost = 389.097 panther3_TS1-scwrl costs 1568.88 real_cost = 596.472 panther2_TS1-scwrl costs 1904.68 real_cost = 571.694 nFOLD_TS5-scwrl costs 7714.87 real_cost = 590.118 nFOLD_TS4-scwrl costs 30751.6 real_cost = 594.818 nFOLD_TS3-scwrl costs 12992.8 real_cost = 626.054 nFOLD_TS2-scwrl costs 11283.1 real_cost = 612.637 nFOLD_TS1-scwrl costs 11968.7 real_cost = 566.054 mGen-3D_TS1-scwrl costs 11260.6 real_cost = 572.153 keasar-server_TS5-scwrl costs 313.493 real_cost = 376.285 keasar-server_TS4-scwrl costs 327.119 real_cost = 381.216 keasar-server_TS3-scwrl costs 306.115 real_cost = 387.645 keasar-server_TS2-scwrl costs 315.24 real_cost = 373.458 keasar-server_TS1-scwrl costs 324.654 real_cost = 402.079 karypis.srv_TS5-scwrl costs 472.15 real_cost = 396.988 karypis.srv_TS4-scwrl costs 469.975 real_cost = 389.847 karypis.srv_TS3-scwrl costs 394.808 real_cost = 386.951 karypis.srv_TS2-scwrl costs 509.592 real_cost = 402.589 karypis.srv_TS1-scwrl costs 534.139 real_cost = 412.944 karypis.srv.4_TS5-scwrl costs 399.632 real_cost = 389.071 karypis.srv.4_TS4-scwrl costs 479.822 real_cost = 400.842 karypis.srv.4_TS3-scwrl costs 436.652 real_cost = 388.647 karypis.srv.4_TS2-scwrl costs 431.719 real_cost = 410.213 karypis.srv.4_TS1-scwrl costs 437.549 real_cost = 389.757 karypis.srv.2_TS5-scwrl costs 361.258 real_cost = 370.863 karypis.srv.2_TS4-scwrl costs 386.61 real_cost = 401.298 karypis.srv.2_TS3-scwrl costs 400.013 real_cost = 375.695 karypis.srv.2_TS2-scwrl costs 373.698 real_cost = 387.615 karypis.srv.2_TS1-scwrl costs 315.686 real_cost = 359.534 forecast-s_AL5-scwrl costs 58241.5 real_cost = 646.749 forecast-s_AL4-scwrl costs 54258.2 real_cost = 651.02 forecast-s_AL3-scwrl costs 20744.4 real_cost = 651.417 forecast-s_AL2-scwrl costs 109202 real_cost = 649.854 forecast-s_AL1-scwrl costs 66730.5 real_cost = 626.173 beautshotbase_TS1-scwrl costs 479.152 real_cost = 404.198 beautshot_TS1-scwrl costs 408.79 real_cost = 384.66 Zhang-Server_TS5-scwrl costs 314.324 real_cost = 343.22 Zhang-Server_TS4-scwrl costs 321.476 real_cost = 341.221 Zhang-Server_TS3-scwrl costs 338.864 real_cost = 341.934 Zhang-Server_TS2-scwrl costs 329.182 real_cost = 341.446 Zhang-Server_TS1-scwrl costs 331.375 real_cost = 345.113 UNI-EID_sfst_AL5-scwrl costs 111528 real_cost = 652.118 UNI-EID_sfst_AL4-scwrl costs 67202.2 real_cost = 612.179 UNI-EID_sfst_AL3-scwrl costs 69762.3 real_cost = 616.48 UNI-EID_sfst_AL2-scwrl costs 67737.4 real_cost = 610.913 UNI-EID_sfst_AL1-scwrl costs 61833 real_cost = 642.661 UNI-EID_expm_TS1-scwrl costs 12180.5 real_cost = 506.537 UNI-EID_bnmx_TS5-scwrl costs 111653 real_cost = 646.688 UNI-EID_bnmx_TS4-scwrl costs 72283.6 real_cost = 618.99 UNI-EID_bnmx_TS3-scwrl costs 75697.7 real_cost = 620.324 UNI-EID_bnmx_TS2-scwrl costs 71329.7 real_cost = 616.592 UNI-EID_bnmx_TS1-scwrl costs 70722.7 real_cost = 625.542 SPARKS2_TS5-scwrl costs 378.521 real_cost = 371.297 SPARKS2_TS4-scwrl costs 328.102 real_cost = 374.997 SPARKS2_TS3-scwrl costs 317.921 real_cost = 361.886 SPARKS2_TS2-scwrl costs 310.57 real_cost = 358.825 SPARKS2_TS1-scwrl costs 313.393 real_cost = 377.834 SP4_TS5-scwrl costs 322.041 real_cost = 374.458 SP4_TS4-scwrl costs 350.748 real_cost = 384.107 SP4_TS3-scwrl costs 332.874 real_cost = 368.955 SP4_TS2-scwrl costs 329.377 real_cost = 355.958 SP4_TS1-scwrl costs 319.372 real_cost = 372.088 SP3_TS5-scwrl costs 329.067 real_cost = 370.887 SP3_TS4-scwrl costs 334.371 real_cost = 375.164 SP3_TS3-scwrl costs 332.196 real_cost = 365.374 SP3_TS2-scwrl costs 343.66 real_cost = 368.181 SP3_TS1-scwrl costs 316.026 real_cost = 365.066 SAM_T06_server_TS5-scwrl costs 565.351 real_cost = 446.283 SAM_T06_server_TS4-scwrl costs 611.269 real_cost = 458.659 SAM_T06_server_TS3-scwrl costs 623.522 real_cost = 462.118 SAM_T06_server_TS2-scwrl costs 807.096 real_cost = 496.324 SAM_T06_server_TS1-scwrl costs 268.533 real_cost = 377.105 SAM-T99_AL5-scwrl costs 120956 real_cost = 644.801 SAM-T99_AL4-scwrl costs 24363 real_cost = 669.044 SAM-T99_AL3-scwrl costs 85804.8 real_cost = 637.436 SAM-T99_AL2-scwrl costs 47641.8 real_cost = 629.974 SAM-T99_AL1-scwrl costs 34353.6 real_cost = 635.163 SAM-T02_AL5-scwrl costs 107531 real_cost = 680.312 SAM-T02_AL4-scwrl costs 52468.4 real_cost = 644.124 SAM-T02_AL3-scwrl costs 13829.3 real_cost = 674.541 SAM-T02_AL2-scwrl costs 48159.3 real_cost = 638.407 SAM-T02_AL1-scwrl costs 83026.2 real_cost = 657.995 ROKKY_TS5-scwrl costs 317.096 real_cost = 367.658 ROKKY_TS4-scwrl costs 327.541 real_cost = 376.792 ROKKY_TS3-scwrl costs 326.9 real_cost = 369.246 ROKKY_TS2-scwrl costs 328.526 real_cost = 379.437 ROKKY_TS1-scwrl costs 323.226 real_cost = 369.435 ROBETTA_TS5-scwrl costs 288.189 real_cost = 372.886 ROBETTA_TS4-scwrl costs 297.991 real_cost = 375.494 ROBETTA_TS3-scwrl costs 291.792 real_cost = 360.146 ROBETTA_TS2-scwrl costs 302.616 real_cost = 379.061 ROBETTA_TS1-scwrl costs 308.817 real_cost = 382.492 RAPTOR_TS5-scwrl costs 313.396 real_cost = 371.548 RAPTOR_TS4-scwrl costs 327.631 real_cost = 385.449 RAPTOR_TS3-scwrl costs 325.259 real_cost = 369.902 RAPTOR_TS2-scwrl costs 314.881 real_cost = 370.159 RAPTOR_TS1-scwrl costs 313.809 real_cost = 377.428 RAPTORESS_TS5-scwrl costs 298.342 real_cost = 368.662 RAPTORESS_TS4-scwrl costs 312.206 real_cost = 379.52 RAPTORESS_TS3-scwrl costs 311.914 real_cost = 375.908 RAPTORESS_TS2-scwrl costs 304.58 real_cost = 367.198 RAPTORESS_TS1-scwrl costs 300.312 real_cost = 380.576 RAPTOR-ACE_TS5-scwrl costs 317.711 real_cost = 371.909 RAPTOR-ACE_TS4-scwrl costs 328.004 real_cost = 360.57 RAPTOR-ACE_TS3-scwrl costs 335.726 real_cost = 381.291 RAPTOR-ACE_TS2-scwrl costs 311.323 real_cost = 383.849 RAPTOR-ACE_TS1-scwrl costs 316.026 real_cost = 365.066 Pmodeller6_TS5-scwrl costs 563.369 real_cost = 397.343 Pmodeller6_TS4-scwrl costs 431.099 real_cost = 362.623 Pmodeller6_TS3-scwrl costs 433.472 real_cost = 372.386 Pmodeller6_TS2-scwrl costs 433.472 real_cost = 372.386 Pmodeller6_TS1-scwrl costs 516.563 real_cost = 388.878 Phyre-2_TS5-scwrl costs 333.868 real_cost = 362.364 Phyre-2_TS4-scwrl costs 463.058 real_cost = 384.651 Phyre-2_TS3-scwrl costs 330.961 real_cost = 354.763 Phyre-2_TS2-scwrl costs 490.565 real_cost = 402.407 Phyre-2_TS1-scwrl costs 351.266 real_cost = 373.204 Phyre-1_TS1-scwrl costs 435.086 real_cost = 406.275 Pcons6_TS5-scwrl costs 498.246 real_cost = 388.101 Pcons6_TS4-scwrl costs 603.638 real_cost = 412.426 Pcons6_TS3-scwrl costs 375.559 real_cost = 356.287 Pcons6_TS2-scwrl costs 433.472 real_cost = 372.386 Pcons6_TS1-scwrl costs 427.248 real_cost = 362.949 PROTINFO_TS5-scwrl costs 421.252 real_cost = 400.513 PROTINFO_TS4-scwrl costs 332.87 real_cost = 366.866 PROTINFO_TS3-scwrl costs 319.726 real_cost = 383.094 PROTINFO_TS2-scwrl costs 318.17 real_cost = 388.761 PROTINFO_TS1-scwrl costs 327.611 real_cost = 382.483 PROTINFO-AB_TS5-scwrl costs 329.961 real_cost = 384.751 PROTINFO-AB_TS4-scwrl costs 330.72 real_cost = 394.636 PROTINFO-AB_TS3-scwrl costs 337.47 real_cost = 383.625 PROTINFO-AB_TS2-scwrl costs 336.9 real_cost = 390.746 PROTINFO-AB_TS1-scwrl costs 342.061 real_cost = 391.132 POMYSL_TS5-scwrl costs 475.745 real_cost = 439.345 POMYSL_TS4-scwrl costs 464.812 real_cost = 421.149 POMYSL_TS3-scwrl costs 475.349 real_cost = 428.787 POMYSL_TS2-scwrl costs 546.816 real_cost = 429.932 POMYSL_TS1-scwrl costs 441.757 real_cost = 436.816 NN_PUT_lab_TS1-scwrl costs 371.823 real_cost = 382.707 MetaTasser_TS5-scwrl costs 440.002 real_cost = 367.342 MetaTasser_TS4-scwrl costs 438.734 real_cost = 366.404 MetaTasser_TS3-scwrl costs 453.326 real_cost = 369.273 MetaTasser_TS2-scwrl costs 452.587 real_cost = 366.212 MetaTasser_TS1-scwrl costs 440.002 real_cost = 367.342 Ma-OPUS-server_TS5-scwrl costs 353.394 real_cost = 369.59 Ma-OPUS-server_TS4-scwrl costs 335.733 real_cost = 362.192 Ma-OPUS-server_TS3-scwrl costs 346.548 real_cost = 368.422 Ma-OPUS-server_TS2-scwrl costs 334.82 real_cost = 373.81 Ma-OPUS-server_TS1-scwrl costs 336.754 real_cost = 381.381 Ma-OPUS-server2_TS5-scwrl costs 332.712 real_cost = 367.209 Ma-OPUS-server2_TS4-scwrl costs 335.733 real_cost = 362.192 Ma-OPUS-server2_TS3-scwrl costs 318.435 real_cost = 366.625 Ma-OPUS-server2_TS2-scwrl costs 334.82 real_cost = 373.81 Ma-OPUS-server2_TS1-scwrl costs 350.763 real_cost = 383.394 LOOPP_TS5-scwrl costs 589.634 real_cost = 424.848 LOOPP_TS4-scwrl costs 356.513 real_cost = 385.52 LOOPP_TS3-scwrl costs 387.127 real_cost = 380.26 LOOPP_TS2-scwrl costs 357.103 real_cost = 381.651 LOOPP_TS1-scwrl costs 371.823 real_cost = 382.707 Huber-Torda-Server_TS5-scwrl costs 17482.2 real_cost = 639.258 Huber-Torda-Server_TS4-scwrl costs 21819.4 real_cost = 569.368 Huber-Torda-Server_TS3-scwrl costs 8315.88 real_cost = 642.424 Huber-Torda-Server_TS2-scwrl costs 7824.1 real_cost = 603.351 Huber-Torda-Server_TS1-scwrl costs 22885.7 real_cost = 655.28 HHpred3_TS1-scwrl costs 323.464 real_cost = 375.353 HHpred2_TS1-scwrl costs 324.692 real_cost = 376.328 HHpred1_TS1-scwrl costs 339.543 real_cost = 374.835 GeneSilicoMetaServer_TS5-scwrl costs 446.836 real_cost = 386.929 GeneSilicoMetaServer_TS4-scwrl costs 329.709 real_cost = 377.634 GeneSilicoMetaServer_TS3-scwrl costs 392.546 real_cost = 384.729 GeneSilicoMetaServer_TS2-scwrl costs 820.769 real_cost = 484.281 GeneSilicoMetaServer_TS1-scwrl costs 355.09 real_cost = 377.402 Frankenstein_TS5-scwrl costs 345.925 real_cost = 375.536 Frankenstein_TS4-scwrl costs 364.892 real_cost = 372.581 Frankenstein_TS3-scwrl costs 333.432 real_cost = 370.122 Frankenstein_TS2-scwrl costs 331.117 real_cost = 363.912 Frankenstein_TS1-scwrl costs 325.747 real_cost = 368.371 FUNCTION_TS5-scwrl costs 350.459 real_cost = 375.148 FUNCTION_TS4-scwrl costs 358.107 real_cost = 363.259 FUNCTION_TS3-scwrl costs 371.981 real_cost = 370.561 FUNCTION_TS2-scwrl costs 385.721 real_cost = 382.914 FUNCTION_TS1-scwrl costs 352.372 real_cost = 369.168 FUGUE_AL5-scwrl costs 57683.5 real_cost = 652.647 FUGUE_AL4-scwrl costs 136446 real_cost = 625.043 FUGUE_AL3-scwrl costs 57636.1 real_cost = 661.285 FUGUE_AL2-scwrl costs 72916.9 real_cost = 612.773 FUGUE_AL1-scwrl costs 73306.4 real_cost = 623.574 FUGMOD_TS5-scwrl costs 362.859 real_cost = 400.877 FUGMOD_TS4-scwrl costs 390.625 real_cost = 395.411 FUGMOD_TS3-scwrl costs 361.434 real_cost = 402.222 FUGMOD_TS2-scwrl costs 416.956 real_cost = 378.918 FUGMOD_TS1-scwrl costs 404.673 real_cost = 379.035 FPSOLVER-SERVER_TS5-scwrl costs 351.884 real_cost = 391.879 FPSOLVER-SERVER_TS4-scwrl costs 365.568 real_cost = 399.16 FPSOLVER-SERVER_TS3-scwrl costs 373.25 real_cost = 409.086 FPSOLVER-SERVER_TS2-scwrl costs 358.028 real_cost = 406.658 FPSOLVER-SERVER_TS1-scwrl costs 352.955 real_cost = 402.691 FORTE2_AL5-scwrl costs 62997.5 real_cost = 653.137 FORTE2_AL4-scwrl costs 48820.9 real_cost = 625.225 FORTE2_AL3-scwrl costs 28286.8 real_cost = 616.147 FORTE2_AL2-scwrl costs 137385 real_cost = 643.759 FORTE2_AL1-scwrl costs 44710.2 real_cost = 586.812 FORTE1_AL5-scwrl costs 120244 real_cost = 623.658 FORTE1_AL4-scwrl costs 77046.4 real_cost = 633.07 FORTE1_AL3-scwrl costs 62057.7 real_cost = 658.74 FORTE1_AL2-scwrl costs 51086.5 real_cost = 636.152 FORTE1_AL1-scwrl costs 78395.9 real_cost = 601.312 FOLDpro_TS5-scwrl costs 313.437 real_cost = 371.863 FOLDpro_TS4-scwrl costs 309.618 real_cost = 372.467 FOLDpro_TS3-scwrl costs 299.882 real_cost = 354.499 FOLDpro_TS2-scwrl costs 312.937 real_cost = 369.616 FOLDpro_TS1-scwrl costs 300.244 real_cost = 361.955 FAMS_TS5-scwrl costs 582.851 real_cost = 423.412 FAMS_TS4-scwrl costs 343.144 real_cost = 374.116 FAMS_TS3-scwrl costs 350.459 real_cost = 375.148 FAMS_TS2-scwrl costs 456.091 real_cost = 404.495 FAMS_TS1-scwrl costs 359.709 real_cost = 364.134 FAMSD_TS5-scwrl costs 464.358 real_cost = 397.234 FAMSD_TS4-scwrl costs 467.54 real_cost = 377.381 FAMSD_TS3-scwrl costs 469.985 real_cost = 405.307 FAMSD_TS2-scwrl costs 471.592 real_cost = 409.308 FAMSD_TS1-scwrl costs 359.633 real_cost = 386.161 Distill_TS5-scwrl costs 3137.85 real_cost = 683.711 Distill_TS4-scwrl costs 3136.24 real_cost = 679.069 Distill_TS3-scwrl costs 3134.51 real_cost = 679.608 Distill_TS2-scwrl costs 3138.59 real_cost = 689.265 Distill_TS1-scwrl costs 3136.89 real_cost = 693.67 CaspIta-FOX_TS5-scwrl costs 693.18 real_cost = 419.003 CaspIta-FOX_TS4-scwrl costs 684.537 real_cost = 453.127 CaspIta-FOX_TS3-scwrl costs 860.518 real_cost = 499.925 CaspIta-FOX_TS2-scwrl costs 684.767 real_cost = 448.11 CaspIta-FOX_TS1-scwrl costs 654.838 real_cost = 427.401 CPHmodels_TS1-scwrl costs 1892.92 real_cost = 646.851 CIRCLE_TS5-scwrl costs 333.461 real_cost = 358.856 CIRCLE_TS4-scwrl costs 456.091 real_cost = 404.495 CIRCLE_TS3-scwrl costs 562.013 real_cost = 395.13 CIRCLE_TS2-scwrl costs 582.851 real_cost = 423.412 CIRCLE_TS1-scwrl costs 343.144 real_cost = 374.116 Bilab-ENABLE_TS1-scwrl costs 323.913 real_cost = 360.033 BayesHH_TS1-scwrl costs 338.57 real_cost = 374.776 ABIpro_TS5-scwrl costs 387.603 real_cost = 355.282 ABIpro_TS4-scwrl costs 383.534 real_cost = 360.755 ABIpro_TS3-scwrl costs 396.394 real_cost = 367.123 ABIpro_TS2-scwrl costs 383.653 real_cost = 352.964 ABIpro_TS1-scwrl costs 393.376 real_cost = 358.519 3Dpro_TS5-scwrl costs 309.618 real_cost = 372.467 3Dpro_TS4-scwrl costs 313.437 real_cost = 371.863 3Dpro_TS3-scwrl costs 312.937 real_cost = 369.616 3Dpro_TS2-scwrl costs 299.882 real_cost = 354.499 3Dpro_TS1-scwrl costs 300.244 real_cost = 361.955 3D-JIGSAW_TS2-scwrl costs 1913.47 real_cost = 645.503 3D-JIGSAW_TS1-scwrl costs 1920.44 real_cost = 658.115 3D-JIGSAW_RECOM_TS5-scwrl costs 1978.75 real_cost = 670.912 3D-JIGSAW_RECOM_TS4-scwrl costs 1968.49 real_cost = 637.721 3D-JIGSAW_RECOM_TS3-scwrl costs 1907.64 real_cost = 643.623 3D-JIGSAW_RECOM_TS2-scwrl costs 1963.48 real_cost = 637.826 3D-JIGSAW_RECOM_TS1-scwrl costs 1962.33 real_cost = 658.58 3D-JIGSAW_POPULUS_TS5-scwrl costs 1892.66 real_cost = 640.086 3D-JIGSAW_POPULUS_TS4-scwrl costs 1893.34 real_cost = 623.082 3D-JIGSAW_POPULUS_TS3-scwrl costs 1895.79 real_cost = 641.211 3D-JIGSAW_POPULUS_TS2-scwrl costs 1896.04 real_cost = 610.767 3D-JIGSAW_POPULUS_TS1-scwrl costs 1899.26 real_cost = 627.377 T0355.try9-opt2.repack-nonPC.pdb.gz costs 262.025 real_cost = 374.552 T0355.try9-opt2.pdb.gz costs 260.158 real_cost = 373.808 T0355.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 281.091 real_cost = 377.949 T0355.try9-opt2.gromacs0.pdb.gz costs 280.096 real_cost = 376.463 T0355.try9-opt1.pdb.gz costs 261.986 real_cost = 374.108 T0355.try9-opt1-scwrl.pdb.gz costs 268.665 real_cost = 374.927 T0355.try8-opt2.repack-nonPC.pdb.gz costs 273.506 real_cost = 390.72 T0355.try8-opt2.pdb.gz costs 273.039 real_cost = 390.5 T0355.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 309.729 real_cost = 392.24 T0355.try8-opt2.gromacs0.pdb.gz costs 308.508 real_cost = 389.788 T0355.try8-opt1.pdb.gz costs 277.415 real_cost = 390.32 T0355.try8-opt1-scwrl.pdb.gz costs 282.156 real_cost = 390.337 T0355.try7-opt2.repack-nonPC.pdb.gz costs 246.05 real_cost = 359.278 T0355.try7-opt2.pdb.gz costs 244.187 real_cost = 357.911 T0355.try7-opt2.gromacs0.repack-nonPC.pdb.gz costs 259.014 real_cost = 360.648 T0355.try7-opt2.gromacs0.pdb.gz costs 258.583 real_cost = 359.933 T0355.try7-opt1.pdb.gz costs 250.17 real_cost = 357.67 T0355.try7-opt1-scwrl.pdb.gz costs 252.211 real_cost = 359.738 T0355.try6-opt2.repack-nonPC.pdb.gz costs 243.154 real_cost = 362.229 T0355.try6-opt2.pdb.gz costs 240.326 real_cost = 360.891 T0355.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 260.161 real_cost = 359.113 T0355.try6-opt2.gromacs0.pdb.gz costs 259.035 real_cost = 360.099 T0355.try6-opt1.pdb.gz costs 243.647 real_cost = 360.545 T0355.try6-opt1-scwrl.pdb.gz costs 246.76 real_cost = 360.856 T0355.try5-opt2.repack-nonPC.pdb.gz costs 263.071 real_cost = 374.225 T0355.try5-opt2.pdb.gz costs 261.085 real_cost = 374.899 T0355.try5-opt2.gromacs0.repack-nonPC.pdb.gz costs 283.491 real_cost = 377.984 T0355.try5-opt2.gromacs0.pdb.gz costs 281.892 real_cost = 376.578 T0355.try5-opt1.pdb.gz costs 265.999 real_cost = 374.884 T0355.try5-opt1-scwrl.pdb.gz costs 271.109 real_cost = 376.723 T0355.try4-opt2.repack-nonPC.pdb.gz costs 277.824 real_cost = 391.041 T0355.try4-opt2.pdb.gz costs 276.786 real_cost = 391.048 T0355.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 312.464 real_cost = 390.185 T0355.try4-opt2.gromacs0.pdb.gz costs 311.795 real_cost = 390.06 T0355.try4-opt1.pdb.gz costs 284.553 real_cost = 389.757 T0355.try4-opt1-scwrl.pdb.gz costs 285.348 real_cost = 390.144 T0355.try3-opt2.repack-nonPC.pdb.gz costs 249.527 real_cost = 361.131 T0355.try3-opt2.pdb.gz costs 247.119 real_cost = 359.686 T0355.try3-opt2.gromacs0.repack-nonPC.pdb.gz costs 267.938 real_cost = 358.678 T0355.try3-opt2.gromacs0.pdb.gz costs 266.949 real_cost = 359.071 T0355.try3-opt1.pdb.gz costs 257.891 real_cost = 358.594 T0355.try3-opt1-scwrl.pdb.gz costs 258.41 real_cost = 359.136 T0355.try2-opt2.repack-nonPC.pdb.gz costs 267.582 real_cost = 372.584 T0355.try2-opt2.pdb.gz costs 266.834 real_cost = 374.402 T0355.try2-opt2.gromacs0.repack-nonPC.pdb.gz costs 290.859 real_cost = 380.063 T0355.try2-opt2.gromacs0.pdb.gz costs 290.541 real_cost = 378.193 T0355.try2-opt1.pdb.gz costs 278.132 real_cost = 376.951 T0355.try2-opt1-scwrl.pdb.gz costs 279.223 real_cost = 376.242 T0355.try18-opt2.pdb.gz costs 243.918 real_cost = 361.095 T0355.try18-opt2.gromacs0.repack-nonPC.pdb.gz costs 255.975 real_cost = 356.937 T0355.try18-opt2.gromacs0.pdb.gz costs 255.564 real_cost = 357.191 T0355.try18-opt1.pdb.gz costs 247.251 real_cost = 359.273 T0355.try18-opt1-scwrl.pdb.gz costs 248.824 real_cost = 359.575 T0355.try17-opt2.repack-nonPC.pdb.gz costs 270.309 real_cost = 355.292 T0355.try17-opt2.pdb.gz costs 270.119 real_cost = 355.035 T0355.try17-opt2.gromacs0.repack-nonPC.pdb.gz costs 285.867 real_cost = 354.347 T0355.try17-opt2.gromacs0.pdb.gz costs 285.321 real_cost = 354.279 T0355.try17-opt1.pdb.gz costs 280.547 real_cost = 350.155 T0355.try17-opt1-scwrl.pdb.gz costs 281.894 real_cost = 349.222 T0355.try16-opt2.repack-nonPC.pdb.gz costs 246.157 real_cost = 360.858 T0355.try16-opt2.pdb.gz costs 245.078 real_cost = 361.59 T0355.try16-opt2.gromacs0.repack-nonPC.pdb.gz costs 256.75 real_cost = 357.467 T0355.try16-opt2.gromacs0.pdb.gz costs 256.004 real_cost = 358.356 T0355.try16-opt1.pdb.gz costs 249.533 real_cost = 357.75 T0355.try16-opt1-scwrl.pdb.gz costs 252.467 real_cost = 356.89 T0355.try15-opt2.repack-nonPC.pdb.gz costs 284.044 real_cost = 353.652 T0355.try15-opt2.pdb.gz costs 282.398 real_cost = 352.847 T0355.try15-opt2.gromacs0.repack-nonPC.pdb.gz costs 306.136 real_cost = 351.268 T0355.try15-opt2.gromacs0.pdb.gz costs 305.112 real_cost = 352.022 T0355.try15-opt1.pdb.gz costs 295.14 real_cost = 355.44 T0355.try15-opt1-scwrl.pdb.gz costs 295.687 real_cost = 355.745 T0355.try14-opt2.repack-nonPC.pdb.gz costs 279.178 real_cost = 358.907 T0355.try14-opt2.pdb.gz costs 277.616 real_cost = 358.184 T0355.try14-opt2.gromacs0.repack-nonPC.pdb.gz costs 296.278 real_cost = 350.939 T0355.try14-opt2.gromacs0.pdb.gz costs 295.285 real_cost = 350.737 T0355.try14-opt1.pdb.gz costs 291.114 real_cost = 359.427 T0355.try14-opt1-scwrl.pdb.gz costs 290.563 real_cost = 359.184 T0355.try13-opt2.repack-nonPC.pdb.gz costs 264.556 real_cost = 352.766 T0355.try13-opt2.pdb.gz costs 262.07 real_cost = 353.33 T0355.try13-opt2.gromacs0.repack-nonPC.pdb.gz costs 275.665 real_cost = 352.26 T0355.try13-opt2.gromacs0.pdb.gz costs 274.868 real_cost = 352.581 T0355.try13-opt1.pdb.gz costs 275.144 real_cost = 349.44 T0355.try13-opt1-scwrl.pdb.gz costs 274.382 real_cost = 349.457 T0355.try12-opt2.repack-nonPC.pdb.gz costs 245.871 real_cost = 360.332 T0355.try12-opt2.pdb.gz costs 244.847 real_cost = 360.632 T0355.try12-opt2.gromacs0.repack-nonPC.pdb.gz costs 257.625 real_cost = 360.828 T0355.try12-opt2.gromacs0.pdb.gz costs 256.9 real_cost = 361.533 T0355.try12-opt1.pdb.gz costs 246.939 real_cost = 360.625 T0355.try12-opt1-scwrl.pdb.gz costs 249.914 real_cost = 360.904 T0355.try11-opt2.repack-nonPC.pdb.gz costs 244.302 real_cost = 359.541 T0355.try11-opt2.pdb.gz costs 243.561 real_cost = 359.444 T0355.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 256.248 real_cost = 360.638 T0355.try11-opt2.gromacs0.pdb.gz costs 256.223 real_cost = 360.654 T0355.try11-opt1.pdb.gz costs 246.666 real_cost = 359.792 T0355.try11-opt1-scwrl.pdb.gz costs 248.474 real_cost = 359.911 T0355.try10-opt2.repack-nonPC.pdb.gz costs 242.445 real_cost = 359.403 T0355.try10-opt2.pdb.gz costs 240.171 real_cost = 358.282 T0355.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 258.356 real_cost = 356.737 T0355.try10-opt2.gromacs0.pdb.gz costs 255.887 real_cost = 357.968 T0355.try10-opt1.pdb.gz costs 240.746 real_cost = 360.245 T0355.try10-opt1-scwrl.pdb.gz costs 246.528 real_cost = 361.568 T0355.try1-opt2.repack-nonPC.pdb.gz costs 291.41 real_cost = 390.941 T0355.try1-opt2.pdb.gz costs 290.932 real_cost = 388.586 T0355.try1-opt2.gromacs0.pdb.gz costs 324.811 real_cost = 387.586 T0355.try1-opt1.pdb.gz costs 307.067 real_cost = 384.892 T0355.try1-opt1-scwrl.pdb.gz costs 305.69 real_cost = 386.834 ../model5.ts-submitted costs 811.096 real_cost = 498.063 ../model4.ts-submitted costs 260.193 real_cost = 373.819 ../model3.ts-submitted costs 256.753 real_cost = 357.958 ../model2.ts-submitted costs 256.282 real_cost = 360.721 ../model1.ts-submitted costs 240.199 real_cost = 358.269 align5 costs 1920.19 real_cost = 564.957 align4 costs 1311.23 real_cost = 519.144 align3 costs 1530.22 real_cost = 536.141 align2 costs 1028.57 real_cost = 466.182 align1 costs 1347.94 real_cost = 491.935 T0355.try1-opt2.pdb costs 291.046 real_cost = 388.793 model5-scwrl costs 811.096 real_cost = 498.063 model4-scwrl costs 260.193 real_cost = 373.819 model3-scwrl costs 256.753 real_cost = 357.958 model2-scwrl costs 256.282 real_cost = 360.721 model1-scwrl costs 240.199 real_cost = 358.269 T0355 costs 793.214 real_cost = -885 # command:CPU_time= 1054.6 sec, elapsed time= 1247.31 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0355'