Best Alignments for T0355

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1rd5A/T0355-1rd5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rd5A/T0355-1rd5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1394e-261.48e-101
1qopA/T0355-1qopA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qopA/T0355-1qopA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4299e-266.99e-99 2tysA c.1.2.4
1thfD/T0355-1thfD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1thfD/T0355-1thfD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2325e-171.85e-62 1thfD c.1.2.1
1tqjA/T0355-1tqjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tqjA/T0355-1tqjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9165e-179.72e-67 c.1.2.2
1vizA/T0355-1vizA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vizA/T0355-1vizA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8262e-157.48e-60 c.1.4.1
1vzwA/T0355-1vzwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vzwA/T0355-1vzwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8070e-144.55e-68
2f6uA/T0355-2f6uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f6uA/T0355-2f6uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7899e-141.12e-51
2fliA/T0355-2fliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fliA/T0355-2fliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.0034e-142.84e-64
1xi3A/T0355-1xi3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xi3A/T0355-1xi3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6900e-136.68e-58 c.1.3.1
1tqxA/T0355-1tqxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tqxA/T0355-1tqxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7528e-101.33e-55

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001