Best Alignments for T0354

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y2qA/T0354-1y2qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y2qA/T0354-1y2qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0680e-011.48e-09
1mp9A/T0354-1mp9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mp9A/T0354-1mp9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0443e+004.27e-09 d.129.1.1
d.129.1.1
2gfgA/T0354-2gfgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfgA/T0354-2gfgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2261e+008.92e-07
1v6tA/T0354-1v6tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v6tA/T0354-1v6tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0063e+005.42e-08
1ufkA/T0354-1ufkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ufkA/T0354-1ufkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7246e+002.48e-13 c.66.1.39
1vgjA/T0354-1vgjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vgjA/T0354-1vgjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8481e+003.24e-07
1vljA/T0354-1vljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vljA/T0354-1vljA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1637e+009.36e-05 e.22.1.2
1wy7A/T0354-1wy7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wy7A/T0354-1wy7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6047e+001.72e-12
1wqaA/T0354-1wqaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wqaA/T0354-1wqaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6446e+006.10e-03
1dlyA/T0354-1dlyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dlyA/T0354-1dlyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0348e+002.72e-05 1dlyA a.1.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001