# List of top-scoring protein chains for T0354.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gfgA 193 1.31e+00 1g7uA 284 2.06e+00 1d9eA c.1.10.4 60334 1gh0A 162 3.11e+00 1cpcA a.1.1.3 60491 1ha7A 162 3.44e+00 a.1.1.3 70935 1y8qB 640 3.47e+00 2gibA 103 4.16e+00 1u7iA 136 4.73e+00 d.32.1.7 107724 1ybtA 184 7.84e+00 1dgjA 907 7.98e+00 1alo a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 17909,37694,38585,41415 1sg3A 349 8.40e+00 b.18.1.22,b.18.1.22 98847,98848 1o59A 355 8.46e+00 b.18.1.22,b.18.1.22 92495,92496 1uvxA 121 8.96e+00 a.1.1.1 100067 2gjlA 328 8.98e+00 1dlyA 164 1.03e+01 1dlyA a.1.1.1 14983 1ddvA 111 1.13e+01 1evhA b.55.1.4 27002 1wijA 140 1.18e+01 1ddwA 120 1.22e+01 1evhA b.55.1.4 27001 1bh9B 89 1.24e+01 1bh9B a.22.1.3 16485 2a10A 125 1.24e+01 1uhtA 118 1.30e+01 b.26.1.2 99401 1js1X 324 1.42e+01 c.78.1.1,c.78.1.1 71834,71835 2fg6C 338 1.44e+01 1mp9A 198 1.45e+01 d.129.1.1,d.129.1.1 91385,91386 1z4rA 168 1.49e+01 1wa3A 205 1.52e+01 1y2qA 143 1.55e+01 1vlwA 217 1.55e+01 c.1.10.1 108868 1i2hA 168 1.58e+01 b.55.1.4 71103 1wo8A 126 1.62e+01 1vlbA 907 1.66e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1jdqA 98 1.71e+01 d.68.3.3 66559 1vljA 407 1.73e+01 e.22.1.2 108832 2c5kP 24 1.89e+01 1t71A 281 1.91e+01 1epuA 591 1.92e+01 1dn1A e.25.1.1 43358 1nekB 238 1.99e+01 a.1.2.1,d.15.4.2 80429,80430 1v9kA 228 1.99e+01 d.265.1.3 108449 1xpiA 231 2.04e+01 1cm0A 168 2.09e+01 1yghA d.108.1.1 40800 1eysM 324 2.49e+01 6prcM f.26.1.1 43516 1gntA 553 2.50e+01 e.26.1.1 70290 1e1dA 553 2.51e+01 1e1dA e.26.1.1 43363 1wzcA 249 2.60e+01 1za7A 165 2.69e+01 1wy7A 207 2.71e+01 2ewtA 71 2.71e+01 2d92A 108 2.77e+01 1iruJ 205 2.90e+01 d.153.1.4 71361 2cr0A 121 2.97e+01 1cwpA 190 3.07e+01 1cwpA b.121.4.5 23305 1nhzA 280 3.10e+01 a.123.1.1 85727 1m2zA 257 3.13e+01 a.123.1.1 84768 1tqjA 230 3.16e+01 c.1.2.2 107228 1o5zA 442 3.24e+01 c.59.1.2,c.72.2.2 92530,92531 1za4A 251 3.27e+01 1wfiA 131 3.40e+01 1t3bA 211 3.72e+01 c.47.1.9,d.17.3.1 106341,106342 1rkiA 102 3.73e+01 1gnlA 544 3.77e+01 e.26.1.1 70287 1phwA 284 3.92e+01 c.1.10.4 104155 2fc7A 82 3.96e+01 1wu7A 434 4.01e+01 1rtxA 123 4.11e+01 a.1.1.1 97827 2gr8A 99 4.12e+01 1s69A 124 4.13e+01 a.1.1.1 105305 1j98A 157 4.41e+01 1j98A d.185.1.2 62755 2c5wB 385 4.43e+01 2c6wB 384 4.45e+01 1v6tA 255 4.52e+01 1s16A 390 4.63e+01 d.14.1.3,d.122.1.2 98331,98332 1y43B 173 4.82e+01 1tib 269 4.89e+01 3tgl c.69.1.17 34738 2asfA 137 4.94e+01 1gt6A 269 4.97e+01 c.69.1.17 76342 2f83A 625 5.01e+01 1x25A 128 5.12e+01 1gesA 450 5.23e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1s1iH 191 5.23e+01 i.1.1.1 105182 1lt8A 406 5.39e+01 c.1.26.1 78186 1uvhA 183 5.49e+01 1gerA 450 5.55e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30477,30478,40170 1ufkA 254 5.58e+01 c.66.1.39 99340 1tzjA 338 5.66e+01 1kg0C 136 5.69e+01 d.169.1.1 72445 1a04A 215 5.71e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1umyA 407 5.71e+01 c.1.26.1 99635 1ox3A 109 6.47e+01 h.1.17.1 93668 1weqA 85 6.49e+01 1oxsC 353 6.58e+01 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 6.59e+01 b.40.6.3,c.37.1.12 93715,93716 1jv4A 162 6.59e+01 b.60.1.1 67343 1yclA 156 6.68e+01 1iy8A 267 6.78e+01 c.2.1.2 83774 1q1hA 110 6.78e+01 a.4.5.41 95580 2gl5A 410 6.78e+01 1mup 166 6.85e+01 1mup b.60.1.1 27133 1oz9A 150 6.86e+01 d.92.1.15 93808 1zndA 174 6.91e+01 1rw4A 272 6.92e+01 c.37.1.10 97962 1g8lA 411 7.04e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1i06A 180 7.08e+01 1mup b.60.1.1 27131 2c8vA 288 7.10e+01 1g20E 289 7.10e+01 1cp2A c.37.1.10 32247 1a87 321 7.63e+01 1a87 f.1.1.1 43380 2gr7A 129 7.85e+01 2afaA 425 7.90e+01 2a9aA 372 7.91e+01 2a9bA 372 7.91e+01 2a9dA 372 7.96e+01 1tdf 316 8.07e+01 1trb c.3.1.5,c.3.1.5 30533,30534 1ie0A 157 8.19e+01 d.185.1.2 66120 1tde 316 8.26e+01 1trb c.3.1.5,c.3.1.5 30531,30532 1trb 320 8.28e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1f45B 197 8.30e+01 1f45B a.26.1.1 59642 1x4tA 92 8.33e+01 1cl0A 320 8.47e+01 1trb c.3.1.5,c.3.1.5 30535,30536 1kv7A 488 8.60e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1s1nA 68 8.66e+01 1kczA 413 8.70e+01 c.1.11.2,d.54.1.1 68451,68452 1kanA 253 8.76e+01 1knyA a.24.16.1,d.218.1.1 75878,75879 1f6mA 320 8.79e+01 1trb c.3.1.5,c.3.1.5 30537,30538 2cdqA 510 8.83e+01 1twfK 120 8.85e+01 1iebB 227 8.90e+01 1iakB b.1.1.2,d.19.1.1 21636,38210 2cseD 365 8.95e+01 1jmuG 366 8.99e+01 d.196.1.1 66894