# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gfgA 193 1.78e-01 1y2qA 143 2.44e-01 1mp9A 198 5.30e-01 d.129.1.1,d.129.1.1 91385,91386 1xqaA 113 1.12e+00 1ockA 412 2.11e+00 c.117.1.1 86802 1vpjA 192 2.24e+00 1gudA 288 2.46e+00 c.93.1.1 83326 1s69A 124 2.48e+00 a.1.1.1 105305 1tqjA 230 2.62e+00 c.1.2.2 107228 1gx5A 536 2.86e+00 e.8.1.4 70682 1vmbA 140 2.88e+00 1gntA 553 2.91e+00 e.26.1.1 70290 1obbA 480 3.01e+00 c.2.1.5,d.162.1.2 86760,86761 1wqaA 455 3.04e+00 1qhtA 775 3.14e+00 1tgoA c.55.3.5,e.8.1.1 33722,43011 1vetB 125 3.26e+00 d.110.7.1 108554 1v5vA 401 3.67e+00 2bb6A 414 3.75e+00 1cliA 345 3.96e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1us5A 314 4.10e+00 c.94.1.1 99856 1dlyA 164 4.32e+00 1dlyA a.1.1.1 14983 1fx2A 235 4.43e+00 1fx2A d.58.29.1 39430 1aisA 182 4.63e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 1gnlA 544 4.64e+00 e.26.1.1 70287 1twuA 139 4.72e+00 d.32.1.8 107413 1u94A 356 4.79e+00 c.37.1.11,d.48.1.1 107743,107744 1rp4A 389 4.80e+00 a.227.1.1 105027 1vgjA 184 5.04e+00 1v6tA 255 5.19e+00 1vr6A 350 5.69e+00 1tzjA 338 5.99e+00 1fvuB 125 6.51e+00 1ixxB d.169.1.1 42346 1u9iA 519 7.15e+00 1mjhA 162 7.85e+00 1mjhA c.26.2.4 31639 2acvA 463 8.12e+00 1vhwA 253 8.35e+00 c.56.2.1 100706 1x6vA 630 8.56e+00 1b24A 188 8.59e+00 1b24A d.95.2.1,d.95.2.1 40573,40574 1ymqA 261 8.93e+00 1avyA 74 9.28e+00 1avyB h.1.17.1 45656 1ii7A 333 9.40e+00 1ii7A d.159.1.4 62415 1ylxA 103 1.02e+01 1fyeA 229 1.10e+01 1fyeA c.23.16.4 31477 1nv8A 284 1.12e+01 c.66.1.30 86224 1xzoA 174 1.17e+01 1iab 200 1.21e+01 1iae d.92.1.8 40312 1oo0B 110 1.23e+01 d.58.7.1 87183 1a73A 163 1.26e+01 1a73A d.4.1.3 37145 1g6hA 257 1.29e+01 1gajA c.37.1.12 60318 1d2sA 170 1.35e+01 1d2sA b.29.1.4 24221 1kyqA 274 1.37e+01 c.2.1.11,e.37.1.1 73281,73282 2bfdB 345 1.42e+01 2fcr 173 1.44e+01 1rcf c.23.5.1 31151 2abwA 227 1.45e+01 1vkhA 273 1.46e+01 c.69.1.32 108662 1v37A 177 1.50e+01 1qtoA 122 1.55e+01 1bylA d.32.1.2 38494 1cc8A 73 1.56e+01 1cc8A d.58.17.1 39343 1rz3A 201 1.59e+01 c.37.1.6 98132 1yj7A 171 1.59e+01 1c7gA 456 1.61e+01 c.67.1.2 90415 1x7yB 342 1.64e+01 1oltA 457 1.65e+01 c.1.28.2 93334 1jv1A 505 1.69e+01 c.68.1.5 71892 1lc5A 364 1.72e+01 c.67.1.1 73827 1uheA 97 1.75e+01 1eziA 228 1.77e+01 1eyrA c.68.1.13 34512 1wvfA 520 1.80e+01 1sffA 426 1.81e+01 c.67.1.4 105482 1n3yA 198 1.87e+01 c.62.1.1 79976 1j34B 123 1.89e+01 d.169.1.1 84049 1r8eA 278 1.94e+01 a.6.1.3,d.60.1.1 104843,104844 1e25A 282 1.94e+01 1e25A e.3.1.1 42731 1j98A 157 1.95e+01 1j98A d.185.1.2 62755 1mugA 168 1.96e+01 1mugA c.18.1.2 31030 1vrtA 560 2.00e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 2ca6A 386 2.07e+01 1r3sA 367 2.08e+01 c.1.22.1 96963 1jg5A 83 2.08e+01 d.205.1.1 66666 1pvgA 418 2.10e+01 d.14.1.3,d.122.1.2 95161,95162 1g5hA 454 2.13e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1e8pA 46 2.17e+01 g.55.1.1 59385 1ezwA 349 2.19e+01 1ezwA c.1.16.3 29558 1lssA 140 2.22e+01 c.2.1.9 74246 2gf6A 135 2.22e+01 2b4vA 468 2.23e+01 2ci1A 275 2.27e+01 1y1pA 342 2.29e+01 1oboA 169 2.30e+01 c.23.5.1 86776 1g3qA 237 2.36e+01 1hyqA c.37.1.10 60237 1q79A 514 2.36e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 2gjsA 176 2.37e+01 1u7iA 136 2.38e+01 d.32.1.7 107724 1ufkA 254 2.38e+01 c.66.1.39 99340 1knyA 253 2.41e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1ymkA 175 2.42e+01 1p1mA 406 2.42e+01 b.92.1.4,c.1.9.9 87696,87697 1zetA 388 2.45e+01 1w5fA 353 2.47e+01 2asfA 137 2.49e+01 1xmxA 385 2.50e+01 1gxjA 186 2.51e+01 d.215.1.1 70707 1vljA 407 2.55e+01 e.22.1.2 108832 2bh1A 250 2.59e+01 2a2kA 175 2.60e+01 2bjiA 277 2.62e+01 1b5eA 246 2.66e+01 1b5eA d.117.1.1 41056 1wy2A 351 2.76e+01 1jyhA 157 2.78e+01 d.60.1.3 71956 1s0yA 76 2.86e+01 d.80.1.1 98314 2g0cA 76 2.87e+01 1cnt1 187 2.88e+01 1cnt3 1zin 217 2.94e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1xp8A 366 2.94e+01 1lfpA 249 2.95e+01 e.39.1.1 73885 1u14A 172 2.97e+01 c.51.4.3 107579 1vyrA 364 2.99e+01 c.1.4.1 108906 2fp4B 395 3.07e+01 1xgsA 295 3.11e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1tvlA 454 3.12e+01 c.1.16.4 107366 1qnaA 200 3.20e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 2f2hA 773 3.40e+01 1a7j 290 3.44e+01 1a7j c.37.1.6 31952 1hqkA 154 3.48e+01 c.16.1.1 65902 1h75A 81 3.50e+01 1h75A c.47.1.1 60716 1vimA 200 3.50e+01 c.80.1.3 100758 1gy7A 125 3.57e+01 d.17.4.2 70738 1xfjA 261 3.57e+01 d.194.1.2 109585 1fm0E 150 3.57e+01 1fmaE d.41.5.1 38629 1kafA 108 3.61e+01 d.199.1.1 68372 1w44A 331 3.63e+01 1r89A 437 3.67e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1jh6A 189 3.72e+01 d.61.1.1 66707 1xi1A 575 3.76e+01 1pt6A 213 3.81e+01 c.62.1.1 95091 1sw5B 275 3.87e+01 c.94.1.1 106070 1gefA 123 3.96e+01 1gefA c.52.1.18 60465 1mwwA 128 4.00e+01 d.80.1.4 91483 1wy7A 207 4.09e+01 1vqoT 120 4.09e+01 1f9yA 158 4.15e+01 d.58.30.1 83249 1xviA 275 4.19e+01 1iow 306 4.22e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1usgA 346 4.31e+01 c.93.1.1 99864 1t5bA 201 4.34e+01 c.23.5.3 106433 1tk9A 188 4.35e+01 c.80.1.3 107082 1w66A 232 4.46e+01 1xb4A 202 4.46e+01 1t95A 240 4.46e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1hfoA 113 4.48e+01 d.80.1.3 61006 1xtqA 177 4.49e+01 2aalA 131 4.50e+01 1jqlB 140 4.54e+01 c.37.1.20 63234 1za7A 165 4.61e+01 1ooeA 236 4.62e+01 c.2.1.2 87196 1rypA 243 4.63e+01 1pmaA d.153.1.4 41932 2b5iD 217 4.65e+01 1cg2A 393 4.66e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 2cx1A 187 4.70e+01 1ow1A 195 4.71e+01 b.131.1.3 93625 1dlwA 116 4.79e+01 1dlyA a.1.1.1 14982 1h09A 338 4.79e+01 b.109.1.1,c.1.8.8 83420,83421 1n9lA 109 4.82e+01 d.110.3.6 85468 8abp 306 4.84e+01 8abp c.93.1.1 35647 1jg1A 235 4.89e+01 c.66.1.7 66661 1ok7A 366 4.92e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1r9wA 145 4.96e+01 d.89.1.2 97264 1x67A 146 4.97e+01 1n62C 288 5.00e+01 d.87.2.1,d.145.1.3 80094,80095 2ez6A 221 5.00e+01 1zghA 260 5.04e+01 1j8mF 297 5.06e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1ugjA 141 5.17e+01 b.41.1.3 107826 1jayA 212 5.17e+01 c.2.1.6 66478 2c5aA 379 5.23e+01 1vixA 420 5.32e+01 c.56.5.4,d.58.19.1 100777,100778 2b5wA 357 5.37e+01 1ys4A 354 5.37e+01 2f4nA 273 5.38e+01 1jmsA 381 5.40e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2ft6A 124 5.47e+01 1luaA 287 5.52e+01 c.2.1.7,c.58.1.4 78216,78217 1i88A 389 5.57e+01 c.95.1.2,c.95.1.2 66070,66071 1xiyA 182 5.62e+01 1aky 221 5.64e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1xr4A 509 5.73e+01 1nf9A 207 5.73e+01 c.33.1.3 85631 2audA 257 5.74e+01 1jl0A 334 5.76e+01 1jenA d.156.1.1 63155 1p1lA 102 5.77e+01 d.58.5.2 87695 2fuvA 549 5.77e+01 1zjjA 263 5.87e+01 1rm6A 769 5.88e+01 1s28A 132 5.89e+01 d.198.1.1 105223 1gqeA 365 5.90e+01 e.38.1.1 70351 2a35A 215 5.94e+01 2culA 232 6.07e+01 2asbA 251 6.09e+01 1yhtA 367 6.26e+01 1y0mA 61 6.26e+01 1x13A 401 6.31e+01 2bvcA 486 6.33e+01 1w41A 101 6.40e+01 1md6A 154 6.40e+01 b.42.1.2 91242 1twiA 434 6.43e+01 b.49.2.3,c.1.6.1 107399,107400 1uy4A 145 6.43e+01 b.18.1.10 108131 1i2kA 269 6.44e+01 e.17.1.1 90661 1jkeA 145 6.47e+01 c.110.1.1 66791 1ecsA 126 6.54e+01 1ecsA d.32.1.2 59407 2erxA 172 6.56e+01 1p2fA 220 6.56e+01 a.4.6.1,c.23.1.1 87720,87721 1gwyA 175 6.63e+01 b.97.1.1 83356 2bkyX 89 6.68e+01 1y0uA 96 6.72e+01 1ka1A 357 6.72e+01 e.7.1.1 68369 1a6q 382 6.82e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1j0dA 341 6.89e+01 c.79.1.1 83902 1yz7A 188 6.92e+01 2bivA 243 7.03e+01 1ta3B 303 7.03e+01 c.1.8.3 106732 1u6tA 121 7.11e+01 1opd 85 7.12e+01 1ptf d.94.1.1 40560 1oz9A 150 7.14e+01 d.92.1.15 93808 1ne9A 335 7.16e+01 d.108.1.4,d.108.1.4 91839,91840 1nvmB 312 7.26e+01 c.2.1.3,d.81.1.1 86251,86252 1yndA 165 7.26e+01 1xx1A 285 7.26e+01 1r5mA 425 7.30e+01 1p5fA 189 7.31e+01 c.23.16.2 94142 1y8qA 346 7.41e+01 1uxjA 309 7.43e+01 c.2.1.5,d.162.1.1 108112,108113 1sk4A 163 7.43e+01 d.118.1.1 105664 1u5dA 108 7.44e+01 1ry9A 145 7.45e+01 d.198.1.1 98094 1bby 69 7.48e+01 2bby a.4.5.15 16149 1e19A 314 7.49e+01 1b7bA c.73.1.1 34967 1v8bA 479 7.50e+01 1d5tA 433 7.53e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1l0bA 229 7.57e+01 c.15.1.3,c.15.1.3 73391,73392 1v7lA 163 7.60e+01 2f5gA 133 7.63e+01 1u1iA 392 7.63e+01 c.2.1.3,d.81.1.3 107582,107583 1evlA 401 7.71e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1fjgI 128 7.79e+01 1fjfI d.14.1.1 37559 1uwkA 557 7.87e+01 e.51.1.1 108065 1chuA 540 7.95e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1kk1A 410 7.96e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1b3tA 147 7.98e+01 1b3tA d.58.8.1 39228 2aneA 125 8.01e+01 1sgvA 316 8.07e+01 b.122.1.1,d.265.1.2 98858,98859 1qo2A 241 8.11e+01 1qo2A c.1.2.1 28533 1gheA 177 8.13e+01 d.108.1.1 76222 1gqiA 708 8.13e+01 c.1.8.10,d.92.2.2 76279,76280 1ju2A 536 8.14e+01 c.3.1.2,d.16.1.1 77169,77170 1sgwA 214 8.15e+01 c.37.1.12 105541 1v3yA 192 8.27e+01 1sr4B 261 8.41e+01 d.151.1.1 105949 2g76A 335 8.45e+01 1rss 151 8.45e+01 1rss a.75.1.1 18392 1d4aA 273 8.47e+01 1d4aA c.23.5.3 31219 1z4rA 168 8.55e+01 1ayaA 101 8.59e+01 1qadA d.93.1.1 40460 1ym3A 215 8.62e+01 1rhcA 330 8.62e+01 c.1.16.3 97468 1w2xA 758 8.66e+01 c.14.1.4,c.14.1.4 109134,109135 2h3bA 494 8.68e+01 1wvvA 265 8.72e+01 1zpvA 91 8.82e+01 1ywzA 175 8.84e+01 2cdnA 201 8.89e+01 1o4sA 389 8.95e+01 c.67.1.1 86620