Best Alignments for T0353

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y8qA/T0353-1y8qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y8qA/T0353-1y8qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0523e+001.22e-03
1jg5A/T0353-1jg5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jg5A/T0353-1jg5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4459e+001.05e-04 d.205.1.1
1mdvA/3cyr-T0353-fssp-local-adpstyle5.a2m 1mdvA/3cyr-T0353-fssp-local-adpstyle5.al 5.0148e+006.97e+02 3cyr a.138.1.1
1wr5A/T0353-1wr5A-t06-global-adpstyle1.a2m 1wr5A/T0353-1wr5A-t06-global-adpstyle1.al 5.3776e+003.81e+00
1wtbA/T0353-1wtbA-t06-global-adpstyle1.a2m 1wtbA/T0353-1wtbA-t06-global-adpstyle1.al 7.9037e+002.58e-02
1iqtA/T0353-1iqtA-t06-global-adpstyle1.a2m 1iqtA/T0353-1iqtA-t06-global-adpstyle1.al 8.1066e+002.79e-02 d.58.7.1
2cybA/T0353-2cybA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cybA/T0353-2cybA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1823e+003.13e-05
1t0hB/T0353-1t0hB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t0hB/T0353-1t0hB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4494e+002.39e-02 c.37.1.1
2faoA/T0353-2faoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2faoA/T0353-2faoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4828e+002.01e-03
1r3eA/T0353-1r3eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r3eA/T0353-1r3eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3820e+004.20e-04 b.122.1.1
d.265.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001