# TARGET T0353 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-n_sep-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 20 (1 n_sep ) # The input amino acid frequencies were determined from # alignment T0353.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.29038 # Pos AA G H I J K L M N P Q R S T U V W A B C D 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.118 0.013 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.108 0.032 0.102 0.617 2 Q 0.038 0.003 0.008 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.176 0.007 0.194 0.566 3 I 0.015 0.001 0.002 0.001 0.004 0.005 0.005 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.532 0.002 0.054 0.374 4 H 0.001 0.001 0.001 0.001 0.018 0.016 0.045 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.725 0.001 0.035 0.143 5 V 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.730 0.001 0.035 0.217 6 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.910 0.002 0.019 0.065 7 D 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.680 0.005 0.038 0.261 8 T 0.008 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.566 0.011 0.094 0.312 9 Y 0.022 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.008 0.034 0.020 0.508 0.011 0.142 0.238 10 V 0.018 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.003 0.049 0.322 0.062 0.006 0.260 0.004 0.045 0.211 11 K 0.008 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.097 0.009 0.151 0.041 0.002 0.001 0.429 0.002 0.022 0.203 12 A 0.009 0.033 0.002 0.001 0.004 0.002 0.001 0.001 0.039 0.373 0.021 0.003 0.030 0.001 0.001 0.001 0.134 0.003 0.034 0.310 13 K 0.016 0.036 0.003 0.001 0.001 0.001 0.002 0.001 0.110 0.005 0.001 0.001 0.002 0.001 0.001 0.001 0.275 0.005 0.081 0.462 14 D 0.018 0.029 0.003 0.001 0.001 0.001 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.006 0.113 0.744 15 G 0.145 0.055 0.013 0.003 0.004 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.142 0.089 0.065 0.478 16 H 0.116 0.009 0.040 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.114 0.016 0.339 0.358 17 V 0.008 0.002 0.005 0.005 0.017 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.325 0.002 0.103 0.531 18 M 0.001 0.001 0.001 0.001 0.042 0.315 0.045 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.519 0.001 0.013 0.057 19 H 0.002 0.001 0.001 0.001 0.021 0.010 0.027 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.675 0.001 0.045 0.200 20 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.951 0.001 0.007 0.038 21 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.872 0.002 0.020 0.101 22 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.007 0.853 0.002 0.033 0.093 23 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.063 0.123 0.652 0.003 0.030 0.115 24 T 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.010 0.028 0.064 0.017 0.726 0.002 0.026 0.114 25 D 0.006 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.012 0.045 0.014 0.008 0.011 0.005 0.002 0.220 0.007 0.058 0.605 26 V 0.018 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.006 0.008 0.006 0.006 0.003 0.001 0.001 0.277 0.019 0.164 0.476 27 R 0.017 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.030 0.022 0.553 0.362 28 D 0.108 0.016 0.003 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.051 0.320 0.488 29 D 0.115 0.127 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.024 0.145 0.573 30 K 0.037 0.083 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.009 0.020 0.204 0.630 31 K 0.035 0.097 0.007 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.011 0.404 0.433 32 A 0.039 0.510 0.003 0.001 0.003 0.004 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.006 0.090 0.324 33 I 0.010 0.837 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.002 0.014 0.124 34 E 0.010 0.890 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.013 0.084 35 F 0.005 0.956 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.034 36 A 0.006 0.953 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.034 37 K 0.003 0.967 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 38 Q 0.003 0.961 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.031 39 W 0.007 0.963 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.023 40 L 0.010 0.956 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.010 0.001 0.021 41 S 0.042 0.878 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.028 0.001 0.043 42 S 0.113 0.740 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.057 0.002 0.087 43 I 0.219 0.559 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.071 0.003 0.135 44 G 0.158 0.311 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.017 0.042 0.054 0.375 45 E 0.071 0.086 0.136 0.008 0.001 0.001 0.001 0.001 0.009 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.058 0.015 0.123 0.490 46 E 0.106 0.069 0.003 0.006 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.066 0.012 0.093 0.640 47 G 0.150 0.052 0.006 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.076 0.026 0.078 0.604 48 A 0.257 0.037 0.091 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.076 0.016 0.083 0.429 49 T 0.036 0.012 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.048 0.007 0.076 0.809 50 V 0.036 0.014 0.008 0.009 0.014 0.006 0.008 0.005 0.001 0.001 0.001 0.001 0.002 0.002 0.006 0.002 0.297 0.007 0.065 0.515 51 T 0.012 0.009 0.001 0.001 0.002 0.003 0.004 0.001 0.002 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.067 0.003 0.390 0.501 52 S 0.018 0.008 0.001 0.001 0.002 0.001 0.001 0.001 0.004 0.004 0.008 0.001 0.001 0.001 0.001 0.001 0.223 0.010 0.056 0.662 53 E 0.012 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.107 0.010 0.227 0.630 54 E 0.165 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.020 0.017 0.375 0.408 55 C 0.198 0.314 0.002 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.060 0.033 0.051 0.333 56 R 0.068 0.238 0.004 0.001 0.002 0.003 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.118 0.028 0.083 0.447 57 F 0.051 0.140 0.034 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.124 0.015 0.107 0.515 58 C 0.075 0.161 0.004 0.001 0.001 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.004 0.003 0.250 0.012 0.088 0.379 59 H 0.049 0.157 0.004 0.001 0.001 0.001 0.007 0.006 0.003 0.003 0.001 0.002 0.002 0.003 0.004 0.002 0.159 0.011 0.084 0.503 60 S 0.064 0.104 0.013 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.002 0.001 0.002 0.001 0.001 0.167 0.012 0.100 0.525 61 Q 0.138 0.109 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.002 0.001 0.001 0.073 0.017 0.132 0.511 62 K 0.303 0.046 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.044 0.035 0.076 0.487 63 A 0.255 0.067 0.042 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.027 0.012 0.058 0.533 64 P 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.989 65 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.996 66 E 0.008 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.084 0.886 67 V 0.047 0.304 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 0.005 0.148 0.489 68 I 0.013 0.882 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.005 0.097 69 E 0.002 0.938 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.056 70 A 0.002 0.971 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.025 71 I 0.003 0.981 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.013 72 K 0.003 0.983 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.001 0.009 73 Q 0.012 0.947 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.026 0.001 0.014 74 N 0.202 0.522 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.228 0.001 0.046 75 G 0.150 0.081 0.380 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.067 0.031 0.286 76 Y 0.006 0.006 0.223 0.108 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.061 0.001 0.197 0.398 77 F 0.006 0.001 0.001 0.006 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.761 0.001 0.055 0.167 78 I 0.010 0.004 0.001 0.001 0.010 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.412 0.001 0.093 0.457 79 Y 0.001 0.002 0.001 0.001 0.001 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.007 0.006 0.013 0.014 0.908 0.001 0.006 0.033 80 K 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.006 0.008 0.004 0.641 0.003 0.048 0.274 81 M 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.007 0.004 0.005 0.005 0.009 0.004 0.011 0.741 0.006 0.033 0.151 82 E 0.004 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.005 0.005 0.004 0.024 0.013 0.013 0.013 0.444 0.009 0.099 0.353 83 G 0.058 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.004 0.001 0.003 0.002 0.005 0.005 0.002 0.235 0.018 0.061 0.598 84 C 0.274 0.009 0.006 0.001 0.001 0.001 0.001 0.001 0.014 0.005 0.004 0.003 0.002 0.001 0.001 0.001 0.123 0.011 0.070 0.475 85 N 0.069 0.022 0.003 0.001 0.001 0.001 0.001 0.001 0.007 0.006 0.006 0.002 0.005 0.002 0.001 0.001 0.108 0.010 0.124 0.632