Best Alignments for T0353

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y8qA/T0353-1y8qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y8qA/T0353-1y8qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4776e-017.85e-03
1jg5A/T0353-1jg5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jg5A/T0353-1jg5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4137e+006.54e-03 d.205.1.1
1a26/T0353-1a26-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a26/T0353-1a26-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5500e+001.75e+02 1a26 a.41.1.1
d.166.1.2
2cybA/T0353-2cybA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cybA/T0353-2cybA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4912e+003.13e-05
2faoA/T0353-2faoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2faoA/T0353-2faoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3958e+008.43e-03
1ffkI/T0353-1ffkI-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ffkI/T0353-1ffkI-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7000e+005.34e-01 1ffkI d.12.1.2
1r3eA/T0353-1r3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r3eA/T0353-1r3eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2721e+007.52e-04 b.122.1.1
d.265.1.2
1t0hB/T0353-1t0hB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t0hB/T0353-1t0hB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6101e+007.47e-02 c.37.1.1
1a99A/T0353-1a99A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a99A/T0353-1a99A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8583e+001.16e-02 1pot c.94.1.1
1wr5A/T0353-1wr5A-t06-global-adpstyle1.a2m 1wr5A/T0353-1wr5A-t06-global-adpstyle1.al 9.4965e+003.81e+00

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001