# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y8qA 346 1.99e-02 1t0hB 224 8.71e-02 c.37.1.1 106208 1n9lA 109 2.29e-01 d.110.3.6 85468 2mhr 118 5.70e-01 2mhr a.24.4.1 16581 1tqhA 247 5.75e-01 c.69.1.29 107225 1jg1A 235 6.73e-01 c.66.1.7 66661 2d8sA 80 7.86e-01 1wojA 214 1.10e+00 2cybA 323 1.15e+00 1x4tA 92 1.26e+00 1w41A 101 1.28e+00 1udzA 182 1.39e+00 b.51.1.1 99239 1j3mA 129 1.44e+00 d.129.7.1 103836 1gefA 123 1.63e+00 1gefA c.52.1.18 60465 1yovA 537 1.83e+00 1ldjA 760 2.14e+00 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1wohA 305 2.28e+00 c.42.1.1 109446 1om4A 422 2.47e+00 d.174.1.1 87067 1xreA 217 2.81e+00 1jcfA 344 2.95e+00 c.55.1.1,c.55.1.1 62878,62879 1srb 21 3.28e+00 j.28.1.1 46201 1v4pA 157 3.66e+00 2f7fA 494 3.93e+00 2fi0A 81 4.20e+00 1j0pA 108 4.44e+00 a.138.1.1 90743 2faoA 309 4.51e+00 1u7iA 136 4.58e+00 d.32.1.7 107724 1ucnA 152 4.80e+00 d.58.6.1 99183 1w85I 49 4.89e+00 2f5gA 133 5.11e+00 1s57A 153 5.23e+00 1a99A 344 5.55e+00 1pot c.94.1.1 35812 1jg5A 83 5.58e+00 d.205.1.1 66666 1ta3B 303 5.67e+00 c.1.8.3 106732 1cmcA 104 5.79e+00 1cmbA a.43.1.5 17462 1np6A 174 5.80e+00 c.37.1.10 85954 1p4fA 293 5.96e+00 d.144.1.7 104063 2cbuA 468 7.22e+00 1vp8A 201 7.25e+00 1tzvA 142 7.33e+00 a.79.1.1 107526 1m32A 366 7.44e+00 c.67.1.3 78508 1u6pA 56 7.68e+00 1wh0A 134 7.73e+00 1edn 21 7.76e+00 j.28.1.1 46197 2cvlA 124 7.81e+00 1otkA 249 7.84e+00 a.25.1.2 93521 1xgsA 295 7.89e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 1brwA 433 7.93e+00 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2aqlA 173 8.01e+00 1njqA 39 8.20e+00 g.37.1.3 85822 1s1hN 36 8.62e+00 i.1.1.1 105166 1dxrC 336 9.23e+00 6prcC a.138.1.2 19670 1hh1A 143 9.34e+00 1gefA c.52.1.18 61036 1h70A 255 9.68e+00 1h70A d.126.1.3 60711 1ryqA 69 9.73e+00 g.41.9.3 105126 1q5yA 85 9.78e+00 d.58.18.4 95950 1iukA 140 1.02e+01 c.2.1.8 83712 1qpcA 279 1.03e+01 1fgkA d.144.1.7 41685 1k4mA 213 1.03e+01 c.26.1.3 77258 2fhzA 109 1.07e+01 1wnyA 186 1.09e+01 1fe0A 68 1.11e+01 1cc8A d.58.17.1 39345 2fb0A 94 1.13e+01 1n3lA 372 1.14e+01 c.26.1.1 79966 1jm1A 204 1.14e+01 b.33.1.1 71745 1vqoU 66 1.15e+01 1fukA 165 1.15e+01 1fukA c.37.1.19 32409 1dszA 86 1.16e+01 2nllB g.39.1.2 45129 1nigA 152 1.21e+01 a.25.2.1 85740 2an3A 289 1.21e+01 1wy6A 172 1.23e+01 2a7oA 112 1.24e+01 1klrA 30 1.30e+01 g.37.1.1 72722 1wcwA 261 1.32e+01 1yseA 141 1.36e+01 1vd4A 62 1.36e+01 1f1uA 323 1.38e+01 d.32.1.3,d.32.1.3 83200,83201 1npk 154 1.40e+01 1npk d.58.6.1 39099 2bgcA 238 1.41e+01 1hr6A 475 1.43e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1eg2A 319 1.47e+01 1eg2A c.66.1.11 34249 1hw1A 239 1.49e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1gnkA 112 1.56e+01 2pii d.58.5.1 39073 1wd7A 261 1.58e+01 2ah5A 210 1.63e+01 1oz9A 150 1.69e+01 d.92.1.15 93808 1muwA 386 1.72e+01 c.1.15.3 79495 2flsA 132 1.82e+01 1f1xA 322 1.83e+01 d.32.1.3,d.32.1.3 83208,83209 1gu7A 364 1.85e+01 b.35.1.2,c.2.1.1 83321,83322 2g9zA 348 1.86e+01 1n13B 113 1.88e+01 1b0uA 262 1.91e+01 1b0uA c.37.1.12 32370 1ngnA 155 1.96e+01 a.96.1.2 85697 1m3uA 264 1.99e+01 c.1.12.8 84784 1nc5A 373 2.04e+01 a.102.1.6 85548 2d8qA 70 2.04e+01 2ezh 75 2.07e+01 2ezh a.4.1.2 16029 1i3dA 146 2.07e+01 a.1.1.2 61587 1usuB 170 2.08e+01 d.83.2.1 99886 1yqfA 203 2.09e+01 1s5dA 240 2.12e+01 d.166.1.1 98541 1z84A 351 2.18e+01 2d00A 109 2.20e+01 1qhtA 775 2.29e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 2bv4A 113 2.33e+01 1flmA 122 2.40e+01 1axj b.45.1.1 25747 2a3mA 130 2.42e+01 1kamA 194 2.43e+01 c.26.1.3 72254 1vekA 84 2.43e+01 2ggcA 263 2.46e+01 1ocyA 198 2.48e+01 d.231.1.1 86817 1ccwA 137 2.53e+01 1be1 c.23.6.1 31238 2ew8A 249 2.54e+01 1wurA 220 2.59e+01 1nqkA 381 2.59e+01 c.1.16.4 92050 1w4xA 542 2.60e+01 c.3.1.5,c.3.1.5 109171,109172 1o5zA 442 2.60e+01 c.59.1.2,c.72.2.2 92530,92531 1m3qA 317 2.61e+01 a.96.1.3,d.129.1.2 91184,91185 1dszB 85 2.62e+01 2nllB g.39.1.2 45108 1t6t1 118 2.64e+01 1wveC 80 2.67e+01 2ewcA 126 2.73e+01 1vjeA 166 2.78e+01 d.185.1.2 100807 2bolA 314 2.79e+01 1dl5A 317 2.80e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1tqxA 227 2.81e+01 1y4tA 322 2.82e+01 1ppjA 446 2.82e+01 d.185.1.1,d.185.1.1 104252,104253 2cwkA 160 2.86e+01 1q9uA 130 2.87e+01 d.129.7.1 96314 1r0rI 51 2.89e+01 g.68.1.1 96736 2f8lA 344 2.90e+01 5rubA 490 2.91e+01 1burA c.1.14.1,d.58.9.1 29382,39288 1oaoC 729 3.03e+01 e.26.1.3 86746 1zzpA 130 3.03e+01 1kjwA 295 3.05e+01 b.34.2.1,c.37.1.1 68643,68644 1sgvA 316 3.09e+01 b.122.1.1,d.265.1.2 98858,98859 1hdcA 253 3.10e+01 1e6wA c.2.1.2 29862 1lmzA 187 3.11e+01 a.96.1.4 74037 1tksA 204 3.12e+01 d.115.1.2 107114 1mxmA 254 3.14e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1xnzA 264 3.19e+01 1lucB 324 3.20e+01 1lucA c.1.16.1 29548 1t4wA 196 3.20e+01 b.2.5.2 106427 1r3eA 309 3.28e+01 b.122.1.1,d.265.1.2 96907,96908 1yarH 217 3.38e+01 1z08A 170 3.39e+01 1wimA 94 3.47e+01 1wwhA 119 3.48e+01 1q42A 201 3.50e+01 d.17.4.2 95776 1wm3A 72 3.50e+01 2bu3A 254 3.51e+01 1bjaA 95 3.53e+01 1bjaA a.4.5.9 16122 1o4vA 183 3.54e+01 c.23.8.1 86628 1vkyA 347 3.55e+01 e.53.1.1 108696 1zljA 78 3.56e+01 1o0xA 262 3.57e+01 d.127.1.1 80755 1heiA 451 3.58e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 2c8sA 172 3.68e+01 2bg1A 494 3.68e+01 1o4wA 147 3.72e+01 c.120.1.1 86629 1nuuA 252 3.74e+01 c.26.1.3 86209 1nv8A 284 3.77e+01 c.66.1.30 86224 1w68A 390 3.80e+01 a.25.1.2 109216 2gi9A 56 3.85e+01 1mjhA 162 3.91e+01 1mjhA c.26.2.4 31639 1y7qA 98 3.92e+01 1nznA 126 3.92e+01 a.118.8.1 92382 1dbfA 127 3.95e+01 2chsA d.79.1.2 39761 2acy 98 3.95e+01 2acy d.58.10.1 39298 1r3sA 367 3.98e+01 c.1.22.1 96963 1jkgA 140 4.00e+01 d.17.4.2 66795 2d5xB 146 4.01e+01 1zdzA 302 4.05e+01 2eryA 172 4.09e+01 2bq4A 116 4.13e+01 1pu6A 218 4.15e+01 a.96.1.5 95123 1pvvA 315 4.18e+01 c.78.1.1,c.78.1.1 95190,95191 2cvcA 545 4.23e+01 1mngA 203 4.41e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1h75A 81 4.42e+01 1h75A c.47.1.1 60716 2ethA 154 4.47e+01 1l6rA 227 4.48e+01 c.108.1.10 77768 2a14A 263 4.49e+01 1txlA 215 4.54e+01 b.60.1.4 107429 1wa3A 205 4.54e+01 1cxqA 162 4.55e+01 1cxqA c.55.3.2 33621 1kb9B 352 4.57e+01 d.185.1.1,d.185.1.1 77313,77314 1vloA 381 4.66e+01 b.44.2.1,d.250.1.1 108838,108839 1q68B 29 4.68e+01 j.108.1.1 95963 1t64A 377 4.69e+01 c.42.1.2 106543 2tct 207 4.70e+01 2tct a.4.1.9,a.121.1.1 16063,19240 2bh4X 134 4.79e+01 1xsvA 113 4.85e+01 1jidA 128 4.85e+01 d.201.1.1 66735 1k4iA 233 4.87e+01 d.115.1.2 72056 1wmuB 146 4.90e+01 a.1.1.2 109417 1gps 47 4.90e+01 1gpt g.3.7.5 44176 1ojqA 212 4.91e+01 d.166.1.1 93146 1jf3A 147 4.91e+01 a.1.1.2 71642 2bryA 497 4.92e+01 1xb4A 202 4.98e+01 1u46A 291 5.11e+01 d.144.1.7 107656 1r45A 204 5.11e+01 2ffwA 78 5.12e+01 1kqpA 271 5.13e+01 c.26.2.1 72883 1i1qB 192 5.22e+01 1qdlB c.23.16.1 61544 1r89A 437 5.27e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2c1iA 431 5.30e+01 1ru3A 732 5.34e+01 e.26.1.3 97835 1zcjA 463 5.36e+01 1sz7A 200 5.38e+01 1bif 469 5.41e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1uslA 170 5.42e+01 c.121.1.1 99871 1ekeA 230 5.45e+01 1ekeA c.55.3.1 33572 1s68A 249 5.46e+01 d.142.2.4 98591 1zczA 464 5.48e+01 1f20A 435 5.49e+01 b.43.4.1,c.25.1.4 64932,64933 2gs5A 198 5.51e+01 2f06A 144 5.57e+01 2f1rA 171 5.57e+01 1reqB 637 5.59e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1owtA 66 5.62e+01 d.230.3.1 87493 2cqeA 98 5.64e+01 1rlzA 369 5.64e+01 c.31.1.1 104989 1y7rA 133 5.66e+01 1nlnA 204 5.66e+01 d.3.1.7 91962 1e5dA 402 5.68e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1eyqA 222 5.68e+01 1eypA d.36.1.1 38534 1k2eA 156 5.70e+01 d.113.1.1 72010 1hs7A 97 5.72e+01 1hs7A a.47.2.1 61236 2ganA 190 5.78e+01 1ihoA 283 5.82e+01 1ihoA c.26.1.4 62390 1y9wA 140 5.84e+01 2fulA 178 5.85e+01 2g7jA 124 5.90e+01 1twdA 256 5.93e+01 c.1.30.1 107397 1qusA 322 5.97e+01 1ltm d.2.1.6 36991 1fp0A 88 5.98e+01 1fp0A g.50.1.2 45361 1kg0C 136 6.00e+01 d.169.1.1 72445 1x2iA 75 6.06e+01 1poiA 317 6.09e+01 1poiA c.124.1.2 34153 1qe3A 489 6.09e+01 2bce c.69.1.1 34630 2d1pA 140 6.09e+01 1cpq 129 6.09e+01 1cpq a.24.3.2 16556 1zhvA 134 6.12e+01 1unlD 208 6.12e+01 1kte 105 6.14e+01 1kte c.47.1.1 32771 1qo7A 394 6.19e+01 1qo7A c.69.1.11 34697 1twfI 122 6.22e+01 2gw8A 114 6.22e+01 1cc8A 73 6.23e+01 1cc8A d.58.17.1 39343 2c1xA 456 6.30e+01 1xqaA 113 6.30e+01 1wd2A 60 6.32e+01 g.44.1.1 109232 2db3A 434 6.34e+01 1wvfA 520 6.36e+01 1cqmA 101 6.38e+01 1ris d.58.14.1 39321 1wy5A 317 6.38e+01 1whi 122 6.42e+01 1whi b.39.1.1 24810 2igd 61 6.42e+01 2igd d.15.7.1 37821 1fr2A 86 6.48e+01 a.28.2.1 83256 1nd4A 264 6.48e+01 d.144.1.6 91815 1ummA 172 6.57e+01 a.3.1.1 107958 2ffeA 311 6.58e+01 1lucA 355 6.67e+01 1lucA c.1.16.1 29547 1ispA 181 6.69e+01 c.69.1.18 76778 1d3yA 301 6.69e+01 1d3yA e.12.1.1 43252 1tuwA 109 6.71e+01 d.58.4.8 107346 1zvpA 133 6.72e+01 1hyhA 309 6.83e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1htwA 158 7.02e+01 c.37.1.18 71083 1rcwA 231 7.06e+01 a.132.1.4 97299 1jykA 254 7.11e+01 c.68.1.13 67458 1ctj 89 7.14e+01 1ctj a.3.1.1 15798 1xmpA 170 7.19e+01 2d29A 387 7.21e+01 1kafA 108 7.21e+01 d.199.1.1 68372 1h1oA 183 7.21e+01 a.3.1.4,a.3.1.4 83454,83455 1yz1A 174 7.29e+01 1ehyA 294 7.30e+01 1ehyA c.69.1.11 34693 3dfr 162 7.36e+01 3dfr c.71.1.1 34880 1ut9A 609 7.37e+01 a.102.1.2,b.1.18.2 99912,99913 1wxiA 275 7.43e+01 2ex5A 207 7.55e+01 1juvA 193 7.56e+01 c.71.1.1 90912 2pii 112 7.70e+01 2pii d.58.5.1 39071 1z1zA 131 7.71e+01 2a2fX 325 7.75e+01 2gwdA 449 7.76e+01 1gdeA 389 7.79e+01 c.67.1.1 60456 1cvl 319 7.80e+01 1cvl c.69.1.18 34786 1upkA 341 7.80e+01 a.118.1.15 99758 1jbeA 128 7.82e+01 3chy c.23.1.1 62845 1jkxA 212 7.82e+01 c.65.1.1 66813 1z6eB 52 7.82e+01 1h7eA 245 7.86e+01 c.68.1.13 60717 1w85A 368 7.90e+01 2f7tA 227 7.90e+01 2cx5A 158 7.90e+01 1othA 321 7.92e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1tkkA 366 7.97e+01 c.1.11.2,d.54.1.1 107089,107090 1dw0A 112 7.97e+01 1dw0A a.3.1.1 15911 1nrvA 105 8.03e+01 d.93.1.1 86126 2bcqA 335 8.08e+01 1nh8A 304 8.12e+01 c.94.1.1,d.58.5.3 80507,80508 1o9yA 84 8.13e+01 b.139.1.1 92692 1eexA 554 8.15e+01 1dioA c.1.19.3 29650 2fbyA 205 8.16e+01 2bptA 861 8.20e+01 1i8oA 114 8.22e+01 1ycc a.3.1.1 61979 1vk8A 106 8.22e+01 d.58.48.1 108636 3il8 72 8.25e+01 1tvxA d.9.1.1 37356 1b65A 375 8.32e+01 1b65A d.154.1.1 42020 1ash 150 8.45e+01 1ash a.1.1.2 15622 1atzA 189 8.49e+01 1atzA c.62.1.1 34132 1yndA 165 8.59e+01 1xzoA 174 8.59e+01 1dlwA 116 8.60e+01 1dlyA a.1.1.1 14982 1dj7A 117 8.61e+01 1dj7A g.36.1.1 44997 1zdrA 164 8.61e+01 1mjnA 179 8.65e+01 c.62.1.1 79210 1os6A 71 8.66e+01 a.138.1.1 93476 1d1gA 168 8.68e+01 1d1gA c.71.1.1 34889 1xc3A 302 8.70e+01 2b9eA 303 8.71e+01 2ahqA 76 8.73e+01 2dbnA 461 8.74e+01 2bogX 286 8.74e+01 1fseA 74 8.77e+01 1fseA a.4.6.2 60000 1k38A 254 8.79e+01 e.3.1.1 84303 1mvoA 136 8.84e+01 c.23.1.1 79513 1m4rA 151 8.84e+01 a.26.1.3 84799 1lvwA 295 8.85e+01 c.68.1.6 84723 1bkzA 135 8.88e+01 1a3k b.29.1.3 24202 1qd9A 124 8.89e+01 1qu9A d.79.1.1 39758 1xwvA 129 8.90e+01 1xqoA 256 8.94e+01 2bzgA 232 8.97e+01