# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y8qA 346 9.30e-02 1r3eA 309 4.99e-01 b.122.1.1,d.265.1.2 96907,96908 1anf 370 5.34e-01 4mbp c.94.1.1 35776 1jg5A 83 5.44e-01 d.205.1.1 66666 1sgvA 316 8.08e-01 b.122.1.1,d.265.1.2 98858,98859 2cybA 323 1.04e+00 2faoA 309 1.33e+00 1ytvA 366 1.38e+00 1f1xA 322 1.45e+00 d.32.1.3,d.32.1.3 83208,83209 1f1uA 323 1.74e+00 d.32.1.3,d.32.1.3 83200,83201 1yemA 179 2.04e+00 1a99A 344 2.04e+00 1pot c.94.1.1 35812 1z02A 446 2.17e+00 1xgsA 295 2.42e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 1f0xA 571 2.56e+00 1f0xA d.58.32.2,d.145.1.1 39483,41746 1yqfA 203 2.84e+00 1wm3A 72 2.87e+00 1t0fA 276 2.93e+00 1ww9A 392 3.02e+00 1fyhB 229 3.41e+00 1jrhI b.1.2.1,b.1.2.1 22055,22056 2cvlA 124 3.48e+00 1u20A 212 3.74e+00 1e5dA 402 4.17e+00 1e5dA c.23.5.1,d.157.1.3 31208,42061 1vlmA 219 4.82e+00 c.66.1.41 108836 3seb 238 5.29e+00 3seb b.40.2.2,d.15.6.1 25184,37773 2f20A 240 5.52e+00 3il8 72 5.66e+00 1tvxA d.9.1.1 37356 1q5yA 85 6.30e+00 d.58.18.4 95950 2gtqA 867 6.47e+00 1j8rA 196 6.48e+00 1j8rA b.2.3.3 62745 2gupA 292 6.67e+00 1t0hB 224 6.86e+00 c.37.1.1 106208 1uekA 275 6.94e+00 d.14.1.5,d.58.26.5 88483,88484 1xkzA 255 7.32e+00 1k8wA 327 7.68e+00 b.122.1.1,d.265.1.2 83094,90388 1v25A 541 7.93e+00 e.23.1.1 108275 1zu0A 529 8.13e+00 1fukA 165 8.57e+00 1fukA c.37.1.19 32409 1j3mA 129 8.92e+00 d.129.7.1 103836 2c1lA 358 9.04e+00 2d5cA 263 9.36e+00 1k38A 254 9.38e+00 e.3.1.1 84303 1ockA 412 9.65e+00 c.117.1.1 86802 1iukA 140 9.81e+00 c.2.1.8 83712 1wzcA 249 1.01e+01 1vqoU 66 1.01e+01 1gci 269 1.02e+01 1gci c.41.1.1 32503 1mbyA 88 1.05e+01 d.223.1.1 78931 2a9sA 171 1.08e+01 2b9eA 303 1.09e+01 1qwgA 251 1.12e+01 c.1.27.1 96473 1k55A 246 1.15e+01 e.3.1.1 68156 1mp9A 198 1.15e+01 d.129.1.1,d.129.1.1 91385,91386 1us0A 316 1.15e+01 c.1.7.1 99850 2ewcA 126 1.17e+01 2g30A 258 1.18e+01 1nf2A 268 1.21e+01 c.108.1.10 91849 1xuuA 349 1.23e+01 2fi0A 81 1.27e+01 1ogwA 76 1.29e+01 d.15.1.1 87001 1e42A 258 1.30e+01 1e42A b.1.10.1,d.105.1.1 22316,40792 1qo7A 394 1.33e+01 1qo7A c.69.1.11 34697 1dq3A 454 1.33e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2ggcA 263 1.33e+01 1mkiA 330 1.33e+01 e.3.1.2 84994 1ldjA 760 1.34e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1bkpA 278 1.34e+01 1bkpA d.117.1.1 41029 1v7rA 186 1.34e+01 c.51.4.1 100482 1s68A 249 1.35e+01 d.142.2.4 98591 2ah5A 210 1.36e+01 1brwA 433 1.38e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1u7iA 136 1.39e+01 d.32.1.7 107724 1wd7A 261 1.42e+01 2gcfA 73 1.44e+01 2bvcA 486 1.45e+01 1u1iA 392 1.46e+01 c.2.1.3,d.81.1.3 107582,107583 1wcwA 261 1.47e+01 1zupA 315 1.53e+01 1jnrB 150 1.54e+01 d.58.1.5 66969 1z08A 170 1.55e+01 1kq6A 141 1.56e+01 d.189.1.1 91020 1j79A 347 1.58e+01 1j79A c.1.9.4 62675 1dd9A 338 1.60e+01 1dd9A e.13.1.1 43254 1l8bA 190 1.60e+01 d.86.1.1 73683 1u7lA 392 1.60e+01 1wj9A 211 1.61e+01 1vjeA 166 1.61e+01 d.185.1.2 100807 1wi1A 126 1.62e+01 1bf6A 291 1.62e+01 1pscA c.1.9.3 29065 2bkrA 212 1.62e+01 2ac3A 316 1.65e+01 1mrzA 293 1.65e+01 b.43.5.1,c.26.1.3 91452,91453 2ajrA 331 1.65e+01 1vp8A 201 1.66e+01 1e25A 282 1.72e+01 1e25A e.3.1.1 42731 2a14A 263 1.73e+01 1dxeA 256 1.75e+01 1dxeA c.1.12.5 29310 2g9zA 348 1.75e+01 1ny1A 240 1.76e+01 c.6.2.3 86395 1vl5A 260 1.76e+01 c.66.1.41 108720 1rxyA 253 1.78e+01 c.56.2.1 98065 2ctoA 93 1.79e+01 1nh0A 99 1.79e+01 b.50.1.1 91869 1w41A 101 1.79e+01 1zndA 174 1.83e+01 1m6kA 251 1.83e+01 e.3.1.1 78695 1o22A 170 1.85e+01 d.238.1.1 86557 1wu7A 434 1.85e+01 1wvfA 520 1.86e+01 2fb0A 94 1.87e+01 1sqiA 393 1.89e+01 d.32.1.3,d.32.1.3 105914,105915 1qysA 106 1.89e+01 k.41.1.1 96603 1v4pA 157 1.89e+01 1rypL 212 1.91e+01 d.153.1.4 41880 1reqB 637 1.94e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1gnkA 112 1.95e+01 2pii d.58.5.1 39073 1gefA 123 1.96e+01 1gefA c.52.1.18 60465 1m6eX 359 1.98e+01 c.66.1.35 91188 1y9wA 140 2.00e+01 2c4wA 176 2.01e+01 1jg1A 235 2.01e+01 c.66.1.7 66661 2b8tA 223 2.02e+01 1e0bA 68 2.04e+01 1e0bA b.34.13.2 37476 2gcc 70 2.05e+01 2gcc d.10.1.2 37484 2bolA 314 2.06e+01 1ju3A 583 2.07e+01 b.18.1.13,c.69.1.21 67300,67301 1u11A 182 2.07e+01 c.23.8.1 107576 1o0xA 262 2.09e+01 d.127.1.1 80755 1nddA 76 2.10e+01 1ubi d.15.1.1 37599 1hh1A 143 2.11e+01 1gefA c.52.1.18 61036 2an3A 289 2.11e+01 1l1qA 186 2.13e+01 c.61.1.1 77653 1li4A 432 2.15e+01 c.2.1.4,c.23.12.3 84616,84617 1i8oA 114 2.18e+01 1ycc a.3.1.1 61979 1gsoA 431 2.18e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1opjA 293 2.25e+01 d.144.1.7 87230 1x74A 360 2.30e+01 1fmb 104 2.30e+01 1fmb b.50.1.1 26777 1va4A 279 2.30e+01 c.69.1.12 108458 1vpqA 273 2.31e+01 2fblA 153 2.33e+01 1i4uA 181 2.35e+01 b.60.1.1 61732 1u5mA 73 2.36e+01 1qy1A 174 2.36e+01 b.60.1.1 96568 2f5gA 133 2.39e+01 1gegA 256 2.40e+01 1ybvA c.2.1.2 29888 2adzA 178 2.40e+01 1ufkA 254 2.42e+01 c.66.1.39 99340 1o4vA 183 2.43e+01 c.23.8.1 86628 1d3bA 75 2.48e+01 1d3bA b.38.1.1 24798 2mhr 118 2.48e+01 2mhr a.24.4.1 16581 1y0hA 105 2.54e+01 1mjhA 162 2.58e+01 1mjhA c.26.2.4 31639 1jmuB 666 2.60e+01 1k2eA 156 2.61e+01 d.113.1.1 72010 1qloA 34 2.63e+01 1qloA j.35.1.1 46281 1tw7A 99 2.64e+01 1wojA 214 2.65e+01 1vqoH 171 2.65e+01 1h75A 81 2.66e+01 1h75A c.47.1.1 60716 1xnzA 264 2.67e+01 1xmpA 170 2.67e+01 1zoiA 276 2.67e+01 1cqqA 180 2.67e+01 1cqqA b.47.1.4 26422 2fgeA 995 2.68e+01 1yj1A 76 2.71e+01 1l7dA 384 2.72e+01 c.2.1.4,c.23.12.2 77774,77775 1tc5A 194 2.76e+01 c.110.1.1 106752 2d1pA 140 2.79e+01 1y60A 169 2.80e+01 1e8gA 560 2.83e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1edn 21 2.85e+01 j.28.1.1 46197 1lfdA 87 2.88e+01 1lfdA d.15.1.5 37622 2cr5A 109 2.90e+01 1y7rA 133 2.91e+01 1eo1A 124 2.92e+01 1eo1A c.55.5.1 33739 1j34B 123 2.95e+01 d.169.1.1 84049 2bwqA 129 2.96e+01 1yqzA 438 2.97e+01 1swvA 267 3.05e+01 1pot 325 3.08e+01 1pot c.94.1.1 35807 1zejA 293 3.09e+01 1r6wA 322 3.10e+01 c.1.11.2,d.54.1.1 97165,97166 1gmlA 178 3.11e+01 c.8.5.2 70273 1z1zA 131 3.13e+01 2apoA 357 3.16e+01 2b0cA 206 3.18e+01 1tkeA 224 3.19e+01 1heiA 451 3.19e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1vmjA 151 3.21e+01 1btkA 169 3.21e+01 1btkA b.55.1.1 26959 1wurA 220 3.25e+01 1n6zA 105 3.26e+01 d.263.1.1 85369 1jfrA 262 3.29e+01 1jfrA c.69.1.16 34724 1ub1A 133 3.30e+01 d.10.1.3 99140 2f8aA 208 3.35e+01 1r1qA 100 3.38e+01 d.93.1.1 104763 2c1iA 431 3.40e+01 2fulA 178 3.45e+01 1o1xA 155 3.45e+01 c.121.1.1 86553 1r31A 428 3.49e+01 d.58.20.1,d.179.1.1 96897,96898 1kt6A 183 3.49e+01 b.60.1.1 84466 1dl5A 317 3.52e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1zbqA 327 3.57e+01 2acy 98 3.57e+01 2acy d.58.10.1 39298 1j6qA 136 3.57e+01 b.40.9.1 77091 1v9nA 360 3.58e+01 1ml4A 308 3.59e+01 c.78.1.1,c.78.1.1 79255,79256 1n8jA 186 3.59e+01 c.47.1.10 85401 1wriA 93 3.60e+01 2b3yA 888 3.60e+01 1fe0A 68 3.62e+01 1cc8A d.58.17.1 39345 1o4wA 147 3.65e+01 c.120.1.1 86629 1vchA 175 3.66e+01 1zhsA 113 3.69e+01 1l7mA 211 3.71e+01 c.108.1.4 73664 1vd4A 62 3.71e+01 1t6aA 126 3.72e+01 d.129.8.1 106555 1n71A 180 3.73e+01 d.108.1.1 85370 1y81A 138 3.77e+01 1yxmA 303 3.78e+01 1xx6A 191 3.82e+01 1l7yA 94 3.84e+01 d.15.1.6 73676 1thtA 305 3.85e+01 1thtA c.69.1.13 34711 1otgA 125 3.91e+01 1otgA d.80.1.2 39831 1ftrA 296 3.96e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1k78A 149 3.97e+01 a.4.1.5,a.4.1.5 68255,68256 1dbiA 280 3.98e+01 1gci c.41.1.1 32543 1xc3A 302 4.05e+01 1f89A 291 4.07e+01 d.160.1.1 64988 1nh8A 304 4.07e+01 c.94.1.1,d.58.5.3 80507,80508 1fs1B 141 4.15e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1pzxA 289 4.16e+01 c.119.1.1 95484 2d4pA 141 4.16e+01 2ex2A 458 4.18e+01 3tss 194 4.20e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1hywA 68 4.21e+01 1hywA d.186.1.1 61425 1ayaA 101 4.22e+01 1qadA d.93.1.1 40460 1n13B 113 4.28e+01 1vgjA 184 4.30e+01 2fhzA 109 4.32e+01 1ve0A 134 4.32e+01 1yp1A 202 4.37e+01 1w6uA 302 4.37e+01 1fp2A 352 4.40e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 2b18A 164 4.41e+01 1wv9A 94 4.45e+01 1fm0E 150 4.47e+01 1fmaE d.41.5.1 38629 1otkA 249 4.47e+01 a.25.1.2 93521 1s2oA 244 4.48e+01 1epfA 191 4.54e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 2bgcA 238 4.56e+01 1wosA 364 4.60e+01 b.44.2.1,d.250.1.1 109468,109469 1rijA 25 4.61e+01 k.32.1.1 104951 1qqfA 277 4.65e+01 1c3d a.102.4.4 18875 1yrrA 382 4.68e+01 1vq3A 94 4.73e+01 1obbA 480 4.79e+01 c.2.1.5,d.162.1.2 86760,86761 1ubkL 534 4.83e+01 e.18.1.1 88422 2g7jA 124 4.84e+01 1hf2A 210 4.84e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1x9dA 538 4.84e+01 1vquA 374 4.87e+01 1h70A 255 4.88e+01 1h70A d.126.1.3 60711 1s57A 153 4.89e+01 1xf1A 926 4.90e+01 1sauA 115 4.90e+01 1mzbA 136 4.94e+01 a.4.5.42 91497 1n3lA 372 4.98e+01 c.26.1.1 79966 1i1qB 192 4.98e+01 1qdlB c.23.16.1 61544 1u6pA 56 5.00e+01 1pq1A 196 5.02e+01 f.1.4.1 94986 1nrjA 158 5.14e+01 d.110.4.4 86124 1tz9A 367 5.14e+01 c.1.15.6 107466 1ydmA 187 5.18e+01 1whi 122 5.19e+01 1whi b.39.1.1 24810 1k8qA 377 5.20e+01 c.69.1.6 72177 1zljA 78 5.28e+01 1pjxA 314 5.34e+01 b.68.6.1 104167 1vkyA 347 5.37e+01 e.53.1.1 108696 1y8tA 324 5.41e+01 1b5eA 246 5.42e+01 1b5eA d.117.1.1 41056 2f1kA 279 5.42e+01 1pwgA 349 5.48e+01 e.3.1.1 104340 2gfgA 193 5.50e+01 1yqsA 349 5.53e+01 1djrD 103 5.54e+01 3chbD b.40.2.1 24865 2ethA 154 5.54e+01 1kb9B 352 5.58e+01 d.185.1.1,d.185.1.1 77313,77314 1eluA 390 5.58e+01 1elqA c.67.1.3 34434 1czaN 917 5.62e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1wuiL 534 5.65e+01 1mpxA 615 5.65e+01 b.18.1.13,c.69.1.21 85041,85042 1o6lA 337 5.75e+01 d.144.1.7 81092 2f7fA 494 5.83e+01 2gi9A 56 5.91e+01 1nr4A 71 5.96e+01 d.9.1.1 92077 1vqzA 341 6.00e+01 1xlqA 106 6.01e+01 1rtqA 299 6.08e+01 c.56.5.4 97819 1kngA 156 6.10e+01 c.47.1.10 72777 1fkqA 124 6.11e+01 3lzt d.2.1.2 36601 1h7zA 194 6.19e+01 1qhvA b.21.1.1 60733 2d8sA 80 6.28e+01 1yzhA 214 6.32e+01 1vhwA 253 6.38e+01 c.56.2.1 100706 1up8A 598 6.56e+01 a.111.1.2 99710 1zbfA 142 6.58e+01 2fp7B 172 6.58e+01 1jbeA 128 6.59e+01 3chy c.23.1.1 62845 2b9dA 52 6.62e+01 1zd3A 555 6.62e+01 1wa3A 205 6.63e+01 1xjdA 345 6.70e+01 1x0rA 249 6.71e+01 1y8aA 332 6.76e+01 1k5dB 201 6.78e+01 b.55.1.3 68169 1vf8A 377 6.80e+01 1qnrA 344 6.80e+01 1qnoA c.1.8.3 28834 1nbwA 607 6.85e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1qczA 169 6.87e+01 1qczA c.23.8.1 31276 1ois 223 6.88e+01 1a36A e.15.1.1 43267 1rdfA 267 6.95e+01 c.108.1.3 104884 2pii 112 6.95e+01 2pii d.58.5.1 39071 1qtoA 122 6.98e+01 1bylA d.32.1.2 38494 2a61A 145 6.99e+01 2fexA 188 7.02e+01 1ln1A 214 7.06e+01 d.129.3.2 74038 1nd4A 264 7.10e+01 d.144.1.6 91815 1i0dA 332 7.12e+01 1pscA c.1.9.3 61487 1ooeA 236 7.12e+01 c.2.1.2 87196 1who 96 7.17e+01 1who b.7.3.1 23215 1o13A 136 7.17e+01 c.55.5.1 80762 1r0rE 274 7.22e+01 c.41.1.1 96735 1r26A 125 7.24e+01 c.47.1.1 96847 2gwgA 350 7.24e+01 2gs5A 198 7.25e+01 1b24A 188 7.26e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1w85I 49 7.31e+01 1ornA 226 7.32e+01 a.96.1.1 87342 2cqeA 98 7.33e+01 1szwA 379 7.43e+01 d.265.1.4 99047 1jo0A 98 7.52e+01 d.68.4.1 77140 1rf6A 427 7.59e+01 d.68.2.2 97366 1mtpB 43 7.59e+01 1pmy 123 7.68e+01 1bqk b.6.1.1 22888 1l6rA 227 7.71e+01 c.108.1.10 77768 1z57A 339 7.75e+01 1x13A 401 7.77e+01 2fomB 185 7.79e+01 1sq2N 113 7.79e+01 b.1.1.1 105881 1oaqH 121 7.87e+01 b.1.1.1 92707 1v93A 296 7.87e+01 c.1.23.1 100532 1ta0A 197 7.91e+01 c.108.1.16 106729 1u96A 69 8.00e+01 1yseA 141 8.00e+01 1a3aA 148 8.02e+01 1a3aA d.112.1.1 40917 1x0lA 333 8.04e+01 1yqdA 366 8.07e+01 1q2lA 939 8.08e+01 1cjwA 166 8.15e+01 1cjwA d.108.1.1 40818 1n8yC 608 8.15e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80314,80315,80316,80317 1ppjB 439 8.16e+01 d.185.1.1,d.185.1.1 104254,104255 1wwhA 119 8.18e+01 1no5A 114 8.23e+01 d.218.1.5 92014 2b1xA 470 8.25e+01 1klrA 30 8.27e+01 g.37.1.1 72722 1cqyA 99 8.35e+01 1b9zA b.3.1.1 22527 1kr4A 125 8.36e+01 d.58.5.2 72889 1m6sA 347 8.36e+01 c.67.1.1 78701 1ktbA 405 8.48e+01 b.71.1.1,c.1.8.1 72960,72961 1izmA 184 8.51e+01 a.199.1.1 90725 1g0oA 283 8.53e+01 1ybvA c.2.1.2 60181 1vloA 381 8.57e+01 b.44.2.1,d.250.1.1 108838,108839 2ew8A 249 8.60e+01 1ysqA 193 8.61e+01 1krhA 338 8.61e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1hr6A 475 8.64e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1whzA 70 8.67e+01 1qh5A 260 8.67e+01 1qh5A d.157.1.2 42057 2ftwA 521 8.75e+01 1mlwA 301 8.76e+01 d.178.1.1 79289 1mk0A 97 8.82e+01 d.226.1.1 79216 1vi6A 208 8.85e+01 c.23.15.1 100736 1h0hA 977 8.86e+01 b.52.2.2,c.81.1.1 76435,76436 1ppjF 110 8.91e+01 f.27.1.1 104262 1lkoA 191 8.95e+01 a.25.1.1,g.41.5.1 78063,78064 1r8oB 71 8.96e+01 1u07A 90 8.99e+01