Best Alignments for T0353

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y8qA/T0353-1y8qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y8qA/T0353-1y8qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3546e+002.05e-01
1jg5A/T0353-1jg5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jg5A/T0353-1jg5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8533e+002.86e-01 d.205.1.1
1a26/T0353-1a26-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a26/T0353-1a26-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0800e+001.01e+02 1a26 a.41.1.1
d.166.1.2
1ffkI/T0353-1ffkI-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ffkI/T0353-1ffkI-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.9600e+001.52e+00 1ffkI d.12.1.2
1sgvA/T0353-1sgvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sgvA/T0353-1sgvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1669e+005.68e-06 b.122.1.1
d.265.1.2
2cybA/T0353-2cybA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cybA/T0353-2cybA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2540e+001.03e-04
1t0hB/T0353-1t0hB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t0hB/T0353-1t0hB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2665e+002.86e-02 c.37.1.1
1mdvA/T0353-1mdvA-t04-global-adpstyle1.a2m 1mdvA/T0353-1mdvA-t04-global-adpstyle1.al 8.4140e+007.69e+00 3cyr a.138.1.1
1a99A/T0353-1a99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a99A/T0353-1a99A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7412e+003.45e-03 1pot c.94.1.1
1wr5A/T0353-1wr5A-t04-global-adpstyle1.a2m 1wr5A/T0353-1wr5A-t04-global-adpstyle1.al 8.9921e+008.27e+00

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001