# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sgvA 316 1.07e+00 b.122.1.1,d.265.1.2 98858,98859 1r3eA 309 1.43e+00 b.122.1.1,d.265.1.2 96907,96908 1jg5A 83 1.44e+00 d.205.1.1 66666 1u7iA 136 2.76e+00 d.32.1.7 107724 2faoA 309 2.95e+00 1y9kA 157 3.64e+00 1a99A 344 3.70e+00 1pot c.94.1.1 35812 2cybA 323 4.05e+00 1e5dA 402 4.10e+00 1e5dA c.23.5.1,d.157.1.3 31208,42061 1f1uA 323 4.70e+00 d.32.1.3,d.32.1.3 83200,83201 1f1xA 322 4.73e+00 d.32.1.3,d.32.1.3 83208,83209 1y8qA 346 4.85e+00 1nrfA 262 4.92e+00 e.3.1.1 92086 1wm3A 72 5.81e+00 1z02A 446 6.20e+00 1omp 370 6.43e+00 4mbp c.94.1.1 35778 1laxA 370 6.57e+00 c.94.1.1 84576 1pzwA 80 6.63e+00 g.39.1.10 95483 1t3lA 337 6.67e+00 b.34.2.1,c.37.1.1 106358,106359 1j34B 123 7.14e+00 d.169.1.1 84049 2mhr 118 7.25e+00 2mhr a.24.4.1 16581 1xgsA 295 7.37e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 1jzuA 157 7.44e+00 b.60.1.1 84271 1t0hB 224 7.84e+00 c.37.1.1 106208 1jykA 254 8.14e+00 c.68.1.13 67458 1ww9A 392 8.26e+00 1fyhB 229 8.62e+00 1jrhI b.1.2.1,b.1.2.1 22055,22056 1j0pA 108 8.74e+00 a.138.1.1 90743 2cthA 107 9.14e+00 3cyr a.138.1.1 19652 1anf 370 9.73e+00 4mbp c.94.1.1 35776 1q5yA 85 1.10e+01 d.58.18.4 95950 2bzoB 79 1.10e+01 1va4A 279 1.16e+01 c.69.1.12 108458 1ytvA 366 1.17e+01 2f20A 240 1.19e+01 1nb5I 98 1.28e+01 d.17.1.2 80381 2d8sA 80 1.31e+01 1k8wA 327 1.31e+01 b.122.1.1,d.265.1.2 83094,90388 1fukA 165 1.34e+01 1fukA c.37.1.19 32409 1nf2A 268 1.37e+01 c.108.1.10 91849 1innA 166 1.41e+01 1j98A d.185.1.2 62608 1vjeA 166 1.41e+01 d.185.1.2 100807 2f7fA 494 1.45e+01 1o0xA 262 1.47e+01 d.127.1.1 80755 1dazC 99 1.48e+01 1hvc b.50.1.1 26501 1f0xA 571 1.52e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 2fb6A 117 1.56e+01 1yqfA 203 1.64e+01 1ldjA 760 1.65e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 3seb 238 1.66e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1ww8A 439 1.70e+01 2gtqA 867 1.77e+01 1j3mA 129 1.77e+01 d.129.7.1 103836 1uekA 275 1.90e+01 d.14.1.5,d.58.26.5 88483,88484 1v4pA 157 1.91e+01 1v7oA 165 1.92e+01 d.67.1.2 100480 4mbp 370 1.97e+01 4mbp c.94.1.1 35777 1y9wA 140 2.03e+01 1xa1A 255 2.04e+01 e.3.1.1 109529 1brwA 433 2.14e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1b6a 478 2.16e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1nh0A 99 2.19e+01 b.50.1.1 91869 1xkzA 255 2.23e+01 1n3lA 372 2.29e+01 c.26.1.1 79966 1wggA 96 2.30e+01 2b25A 336 2.33e+01 2ggcA 263 2.39e+01 2c1lA 358 2.48e+01 1k2eA 156 2.49e+01 d.113.1.1 72010 1wojA 214 2.70e+01 1o51A 114 2.75e+01 d.58.5.4 92480 1bkpA 278 2.81e+01 1bkpA d.117.1.1 41029 1sqiA 393 2.85e+01 d.32.1.3,d.32.1.3 105914,105915 1dq3A 454 2.86e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 3il8 72 2.98e+01 1tvxA d.9.1.1 37356 1hr6B 443 3.00e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 2c4wA 176 3.03e+01 1z08A 170 3.10e+01 1qysA 106 3.23e+01 k.41.1.1 96603 2b9eA 303 3.25e+01 1iukA 140 3.30e+01 c.2.1.8 83712 1difA 99 3.32e+01 1fmb b.50.1.1 26503 1u5mA 73 3.36e+01 1x9dA 538 3.39e+01 1m6eX 359 3.39e+01 c.66.1.35 91188 1l8bA 190 3.41e+01 d.86.1.1 73683 2gupA 292 3.44e+01 1befA 181 3.47e+01 1befA b.47.1.3 26419 2dtr 226 3.50e+01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1gsoA 431 3.59e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1gmlA 178 3.61e+01 c.8.5.2 70273 1vd4A 62 3.61e+01 2apoA 357 3.67e+01 1y3jA 77 3.68e+01 1wzcA 249 3.71e+01 1fyxA 149 3.72e+01 1fyvA c.23.2.1 31128 1xmrA 243 3.72e+01 1y60A 169 3.76e+01 1x0rA 249 3.83e+01 2bkqA 212 3.91e+01 1v2yA 105 3.91e+01 d.15.1.1 100275 1ockA 412 3.92e+01 c.117.1.1 86802 1s68A 249 3.94e+01 d.142.2.4 98591 1qo7A 394 3.94e+01 1qo7A c.69.1.11 34697 2f5gA 133 3.95e+01 1j6wA 175 4.09e+01 1j98A d.185.1.2 62663 1h2rL 534 4.22e+01 1h2rL e.18.1.1 43298 2fhzA 109 4.23e+01 1yp1A 202 4.24e+01 1zu0A 529 4.30e+01 1q67A 231 4.30e+01 b.55.1.7 95960 1vp8A 201 4.33e+01 1yemA 179 4.37e+01 1v7rA 186 4.38e+01 c.51.4.1 100482 1t0fA 276 4.51e+01 1ny1A 240 4.52e+01 c.6.2.3 86395 2a9fA 398 4.53e+01 1xnzA 264 4.53e+01 1c24A 263 4.55e+01 1c24A d.127.1.1 41148 2ao0A 324 4.58e+01 2bcgY 206 4.62e+01 1ukvY 206 4.63e+01 c.37.1.8 107918 1j8rA 196 4.66e+01 1j8rA b.2.3.3 62745 1rxyA 253 4.69e+01 c.56.2.1 98065 1f1zA 273 4.76e+01 1f1zA a.4.5.27,c.52.1.16 16081,33334 2a3mA 130 4.94e+01 1yzhA 214 4.97e+01 1w6uA 302 5.01e+01 1rypL 212 5.03e+01 d.153.1.4 41880 2cwoA 197 5.05e+01 1heiA 451 5.07e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1pot 325 5.19e+01 1pot c.94.1.1 35807 1tw7A 99 5.20e+01 1zejA 293 5.22e+01 1reqB 637 5.23e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1v25A 541 5.23e+01 e.23.1.1 108275 1c5cH 215 5.28e+01 1igtB b.1.1.1,b.1.1.2 20475,21439 1u6pA 56 5.29e+01 2aqjA 538 5.38e+01 2b1xA 470 5.40e+01 2fb0A 94 5.47e+01 1mmvB 419 5.51e+01 d.174.1.1 91318 1srb 21 5.56e+01 j.28.1.1 46201 1s72M 194 5.57e+01 d.12.1.2 105332 2cy0A 263 5.58e+01 1vqoM 195 5.59e+01 1edn 21 5.63e+01 j.28.1.1 46197 2d5cA 263 5.64e+01 1yv5A 374 5.74e+01 1fo3A 460 5.76e+01 1dl2A a.102.2.1 18845 1e0bA 68 5.80e+01 1e0bA b.34.13.2 37476 1w41A 101 5.81e+01 1r6wA 322 5.82e+01 c.1.11.2,d.54.1.1 97165,97166 1wxdA 263 5.82e+01 2a9sA 171 5.85e+01 2ptd 298 5.87e+01 2plc c.1.18.2 29605 1jj2T 66 5.89e+01 1ffkR g.39.1.6 63105 1s72U 66 5.89e+01 g.39.1.6 105340 1vqoU 66 5.89e+01 1zhsA 113 5.92e+01 2ctoA 93 5.93e+01 1pg5A 299 5.93e+01 c.78.1.1,c.78.1.1 104146,104147 1lx7A 253 5.94e+01 c.56.2.1 74329 1ej1A 190 5.95e+01 1ejhA d.86.1.1 40144 1ve0A 134 5.96e+01 1uohA 226 5.98e+01 d.211.1.1 99690 1udzA 182 6.00e+01 b.51.1.1 99239 1jidA 128 6.08e+01 d.201.1.1 66735 1qloA 34 6.13e+01 1qloA j.35.1.1 46281 2eryA 172 6.16e+01 1htqA 477 6.19e+01 d.15.9.1,d.128.1.1 71035,71036 1m36A 33 6.19e+01 g.37.1.2 91172 1h7mA 102 6.23e+01 d.79.3.1 83485 1vlmA 219 6.26e+01 c.66.1.41 108836 1o4wA 147 6.33e+01 c.120.1.1 86629 1s2oA 244 6.36e+01 2gi9A 56 6.45e+01 1yq7A 374 6.51e+01 2ethA 154 6.51e+01 1l1qA 186 6.52e+01 c.61.1.1 77653 1cqqA 180 6.53e+01 1cqqA b.47.1.4 26422 2avnA 260 6.54e+01 1wd7A 261 6.56e+01 1ctqA 166 6.58e+01 1ctqA c.37.1.8 31965 1gefA 123 6.60e+01 1gefA c.52.1.18 60465 2bvcA 486 6.60e+01 1vmiA 355 6.61e+01 2f94F 350 6.65e+01 2d4pA 141 6.68e+01 1jh6A 189 6.69e+01 d.61.1.1 66707 1ubkL 534 6.69e+01 e.18.1.1 88422 1k38A 254 6.69e+01 e.3.1.1 84303 1vl5A 260 6.70e+01 c.66.1.41 108720 1p8kZ 254 6.71e+01 d.95.2.1,d.95.2.1 94361,94362 2fulA 178 6.76e+01 1yqdA 366 6.78e+01 1w6tA 444 6.78e+01 2fi0A 81 6.79e+01 1ln1A 214 6.86e+01 d.129.3.2 74038 1wcwA 261 6.86e+01 2b8tA 223 6.88e+01 2b18A 164 6.89e+01 1mup 166 6.93e+01 1mup b.60.1.1 27133 1u1jA 765 6.93e+01 c.1.22.2,c.1.22.2 107590,107591 1sw6A 327 6.96e+01 1sw6A d.211.1.1 19176 1mkiA 330 6.97e+01 e.3.1.2 84994 1up9A 107 7.07e+01 1nbfA 353 7.09e+01 d.3.1.9 80387 1lkoA 191 7.10e+01 a.25.1.1,g.41.5.1 78063,78064 1gl0I 35 7.11e+01 g.4.1.1 65271 3cyr 107 7.15e+01 3cyr a.138.1.1 19648 1e25A 282 7.15e+01 1e25A e.3.1.1 42731 1u1hA 765 7.19e+01 c.1.22.2,c.1.22.2 107580,107581 1kzkA 99 7.26e+01 b.50.1.1 73371 1l7yA 94 7.27e+01 d.15.1.6 73676 1o22A 170 7.28e+01 d.238.1.1 86557 2cvlA 124 7.33e+01 2ae0X 345 7.36e+01 2a14A 263 7.42e+01 2gaeA 346 7.42e+01 1hh1A 143 7.44e+01 1gefA c.52.1.18 61036 1ys4A 354 7.48e+01 1n71A 180 7.48e+01 d.108.1.1 85370 1b87A 181 7.49e+01 1b87A d.108.1.1 40797 1j97A 211 7.55e+01 1f5sA c.108.1.4 62753 1ogwA 76 7.56e+01 d.15.1.1 87001 1ubi 76 7.56e+01 1ubi d.15.1.1 37584 2bolA 314 7.66e+01 1tit 98 7.70e+01 1tit b.1.1.4 21716 1a0i 348 7.87e+01 1a0i b.40.4.6,d.142.2.1 25363,41577 1nktA 922 7.89e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1a6bB 40 7.89e+01 1a6bB g.40.1.1 45172 1l7mA 211 7.96e+01 c.108.1.4 73664 1ufkA 254 7.97e+01 c.66.1.39 99340 1m2oA 768 8.01e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2agtA 319 8.03e+01 1kq6A 141 8.07e+01 d.189.1.1 91020 1pwmA 316 8.15e+01 c.1.7.1 95231 1m4rA 151 8.21e+01 a.26.1.3 84799 1mp9A 198 8.21e+01 d.129.1.1,d.129.1.1 91385,91386 1t6aA 126 8.23e+01 d.129.8.1 106555 1xwyA 264 8.25e+01 2bkrA 212 8.29e+01 2ajrA 331 8.30e+01 1eo1A 124 8.39e+01 1eo1A c.55.5.1 33739 1ads 315 8.40e+01 1frb c.1.7.1 28671 1j7gA 144 8.41e+01 c.110.1.1 84130 1jmuB 666 8.51e+01 1vchA 175 8.56e+01 1wriA 93 8.59e+01 1ur6B 52 8.64e+01 g.44.1.1 99812 1gci 269 8.67e+01 1gci c.41.1.1 32503 1l5jA 865 8.76e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1n13B 113 8.78e+01 1om4A 422 8.85e+01 d.174.1.1 87067