Best Alignments for T0352

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1tbmA/T0352-1tbmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tbmA/T0352-1tbmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6260e+003.87e-08 a.211.1.2
1jpaA/T0352-1jpaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jpaA/T0352-1jpaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0032e+002.89e-04 d.144.1.7
1zd3A/T0352-1zd3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zd3A/T0352-1zd3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0836e+011.69e-05
1cr6B/T0352-1cr6B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cr6B/T0352-1cr6B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0866e+011.13e-05 1cr6B c.69.1.11
c.108.1.2
1vj5A/T0352-1vj5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vj5A/T0352-1vj5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1229e+012.88e-05 c.108.1.2
c.69.1.11
2furA/T0352-2furA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2furA/T0352-2furA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3386e+014.19e-05
1zv1A/T0352-1zv1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zv1A/T0352-1zv1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3845e+013.96e-03
1myo/T0352-1myo-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1myo/T0352-1myo-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5618e+011.08e+00 2myo d.211.1.1
1efcA/T0352-1efcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1efcA/T0352-1efcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7003e+011.09e-04 1efcA b.43.3.1
b.44.1.1
c.37.1.8
6gsvA/T0352-6gsvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 6gsvA/T0352-6gsvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7466e+017.99e-02 1b8xA a.45.1.1
c.47.1.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001