a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0352 NESG:ER225, E.Coli, 117 res
- gi|77963183|ref|ZP_00826995.1|_1:109 COG3098: Uncharacterized protein conserved in bacteria [Yersinia mollaretii ATCC 43969]
- gi|77957681|ref|ZP_00821730.1|_1:109 COG3098: Uncharacterized protein conserved in bacteria [Yersinia bercovieri ATCC 43970]
- gi|77972702|ref|ZP_00828261.1|_1:109 COG3098: Uncharacterized protein conserved in bacteria [Yersinia frederiksenii ATCC 33641]
- gi|108806508|ref|YP_650424.1|_1:109 hypothetical protein YPA_0511 [Yersinia pestis Antiqua]
- gi|108813125|ref|YP_648892.1| hypothetical protein YPN_2965 [Yersinia pestis Nepal516]
- gi|108778421|gb|ABG12479.1| hypothetical protein YPA_0511 [Yersinia pestis Antiqua]
- gi|108776773|gb|ABG19292.1| hypothetical protein YPN_2965 [Yersinia pestis Nepal516]
- gi|51590607|emb|CAH22248.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953]
- gi|15979104|emb|CAC89879.1| conserved hypothetical protein [Yersinia pestis CO92]
- gi|51597325|ref|YP_071516.1| hypothetical protein YPTB3010 [Yersinia pseudotuberculosis IP 32953]
- gi|16121337|ref|NP_404650.1| hypothetical protein YPO1037 [Yersinia pestis CO92]
- gi|89105127|ref|ZP_01177652.1| COG3098: Uncharacterized protein conserved in bacteria [Yersinia pestis biovar Orientalis str. IP275]
- gi|77633931|ref|ZP_00796043.1| COG3098: Uncharacterized protein conserved in bacteria [Yersinia pestis Angola]
- gi|77630044|ref|ZP_00792630.1| COG3098: Uncharacterized protein conserved in bacteria [Yersinia pseudotuberculosis IP 31758]
- gi|77977755|ref|ZP_00833196.1|_1:109 COG3098: Uncharacterized protein conserved in bacteria [Yersinia intermedia ATCC 29909]
- gi|74313364|ref|YP_311783.1|_1:109 hypothetical protein SSO_2949 [Shigella sonnei Ss046]
- gi|73856841|gb|AAZ89548.1| conserved hypothetical protein [Shigella sonnei Ss046]
- gi|15803314|ref|NP_289347.1|_1:109 hypothetical protein Z4108 [Escherichia coli O157:H7 EDL933]
- gi|15832906|ref|NP_311679.1| hypothetical protein ECs3652 [Escherichia coli O157:H7 str. Sakai]
- gi|82778171|ref|YP_404520.1| hypothetical protein SDY_3009 [Shigella dysenteriae Sd197]
- gi|13363124|dbj|BAB37075.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
- gi|12517268|gb|AAG57906.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
- gi|81242319|gb|ABB63029.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
- gi|75233982|ref|ZP_00718431.1| COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli E110019]
- gi|82545091|ref|YP_409038.1|_1:109 hypothetical protein SBO_2673 [Shigella boydii Sb227]
- gi|75176345|ref|ZP_00696489.1| COG3098: Uncharacterized protein conserved in bacteria [Shigella boydii BS512]
- gi|81246502|gb|ABB67210.1| conserved hypothetical protein [Shigella boydii Sb227]
- gi|75196763|ref|ZP_00706833.1|_1:109 COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli HS]
- gi|83584952|ref|ZP_00923608.1| COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli 101-1]
- gi|16130699|ref|NP_417272.1|_1:109 hypothetical protein b2792 [Escherichia coli K12]
- gi|1789156|gb|AAC75834.1| conserved protein [Escherichia coli K12]
- gi|89109578|ref|AP_003358.1| hypothetical protein [Escherichia coli W3110]
- gi|3183493|sp|Q46919|YQCC_ECOLI Hypothetical protein yqcC [Taxonomy]
- gi|85675611|dbj|BAE76864.1| conserved hypothetical protein [Escherichia coli W3110]
- gi|882687|gb|AAB40442.1| corresponds to hypothetical protein from E. carotovora PIR Accession Number S45108; 2 ORFs in E. coli; ORF_f109 [Taxonomy]
- gi|75511935|ref|ZP_00734538.1| COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli 53638]
- gi|75256869|ref|ZP_00728463.1| COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli E22]
- gi|75228247|ref|ZP_00714904.1| COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli B7A]
- gi|75212588|ref|ZP_00712612.1| COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli B171]
- gi|75187520|ref|ZP_00700787.1| COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli E24377A]
- gi|26109602|gb|AAN81805.1|_1:109 Hypothetical protein yqcC [Escherichia coli CFT073]
- gi|26249195|ref|NP_755235.1| Hypothetical protein yqcC [Escherichia coli CFT073]
- gi|75241818|ref|ZP_00725637.1|_1:109 COG3098: Uncharacterized protein conserved in bacteria [Escherichia coli F11]
- gi|91212159|ref|YP_542145.1|_1:109 hypothetical protein YqcC [Escherichia coli UTI89]
- gi|91073733|gb|ABE08614.1| hypothetical protein YqcC [Escherichia coli UTI89]
- gi|45437447|gb|AAS62998.1|_47:155 conserved hypothetical protein [Yersinia pestis biovar Medievalis str. 91001]
- gi|45442582|ref|NP_994121.1| hypothetical protein YP2814 [Yersinia pestis biovar Medievalis str. 91001]
- gi|21960068|gb|AAM86694.1|_16:124 hypothetical protein y3144 [Yersinia pestis KIM]
- gi|22127020|ref|NP_670443.1| hypothetical protein y3144 [Yersinia pestis KIM]
- gi|16766271|ref|NP_461886.1|_1:109 putative cytoplasmic protein [Salmonella typhimurium LT2]
- gi|16421516|gb|AAL21845.1| putative cytoplasmic protein [Salmonella typhimurium LT2]
- gi|16761744|ref|NP_457361.1|_1:109 hypothetical protein STY3104 [Salmonella enterica subsp. enterica serovar Typhi str. CT18]
- gi|29143228|ref|NP_806570.1| hypothetical protein t2874 [Salmonella enterica subsp. enterica serovar Typhi Ty2]
- gi|16504045|emb|CAD06079.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
- gi|56129172|gb|AAV78678.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150]
- gi|29138861|gb|AAO70430.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
- gi|56414915|ref|YP_151990.1| hypothetical protein SPA2829 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150]
- gi|25324751|pir||AH0861 conserved hypothetical protein yqcC [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) [Taxonomy]
- gi|24053204|gb|AAN44293.1|_1:109 orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
- gi|24114076|ref|NP_708586.1| hypothetical protein SF2805 [Shigella flexneri 2a str. 301]
- gi|30042393|gb|AAP18118.1| hypothetical protein S_2999 [Shigella flexneri 2a str. 2457T]
- gi|30064137|ref|NP_838308.1| hypothetical protein S2999 [Shigella flexneri 2a str. 2457T]
- gi|28807321|dbj|BAC60586.1|_1:103 conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
- gi|28899097|ref|NP_798702.1| hypothetical protein VP2323 [Vibrio parahaemolyticus RIMD 2210633]
- gi|75853971|ref|ZP_00761702.1|_1:103 COG3098: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex25]
- gi|42631737|ref|ZP_00157275.1|_1:106 COG3098: Uncharacterized protein conserved in bacteria [Haemophilus influenzae R2866]
- gi|91223468|ref|ZP_01258733.1|_1:103 hypothetical protein V12G01_22418 [Vibrio alginolyticus 12G01]
- gi|91191554|gb|EAS77818.1| hypothetical protein V12G01_22418 [Vibrio alginolyticus 12G01]
- gi|12720736|gb|AAK02562.1|_1:105 unknown [Pasteurella multocida subsp. multocida str. Pm70]
- gi|15602343|ref|NP_245415.1| hypothetical protein PM0478 [Pasteurella multocida subsp. multocida str. Pm70]
- gi|68058232|gb|AAX88485.1|_1:106 conserved hypothetical protein [Haemophilus influenzae 86-028NP]
- gi|68250033|ref|YP_249145.1| hypothetical protein NTHI1695 [Haemophilus influenzae 86-028NP]
- gi|62181475|ref|YP_217892.1|_20:128 putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]
- gi|62129108|gb|AAX66811.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67]
- gi|53732744|ref|ZP_00349559.1|_1:106 COG3098: Uncharacterized protein conserved in bacteria [Haemophilus influenzae R2846]
- gi|1574275|gb|AAC23085.1|_1:106 conserved hypothetical protein [Haemophilus influenzae Rd KW20]
- gi|3183494|sp|Q57152|Y1436_HAEIN Hypothetical protein HI1436 [Taxonomy]
- gi|16273343|ref|NP_439587.1| hypothetical protein HI1436 [Haemophilus influenzae Rd KW20]
- gi|28851436|gb|AAO54513.1|_1:105 conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
- gi|28868199|ref|NP_790818.1| hypothetical protein PSPTO0979 [Pseudomonas syringae pv. tomato str. DC3000]
- gi|63254806|gb|AAY35902.1|_1:106 Protein of unknown function DUF446 [Pseudomonas syringae pv. syringae B728a]
- gi|66044099|ref|YP_233940.1| Protein of unknown function DUF446 [Pseudomonas syringae pv. syringae B728a]
- gi|71558483|gb|AAZ37694.1|_1:106 tRNA pseudouridine synthase C (Pseudouridine synthase)(Uracil hydrolyase) [Pseudomonas syringae pv. phaseolicola 1448A]
- gi|71737930|ref|YP_273151.1| tRNA pseudouridine synthase C (Pseudouridine synthase)(Uracil hydrolyase) [Pseudomonas syringae pv. phaseolicola 1448A]
- gi|52307178|gb|AAU37678.1|_1:106 unknown [Mannheimia succiniciproducens MBEL55E]
- gi|52425126|ref|YP_088263.1| hypothetical protein MS1071 [Mannheimia succiniciproducens MBEL55E]
- gi|32030765|ref|ZP_00133540.1|_1:103 COG3098: Uncharacterized protein conserved in bacteria [Haemophilus somnus 2336]
- gi|36784090|emb|CAE12959.1|_1:109 unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
- gi|37524665|ref|NP_928009.1| hypothetical protein plu0664 [Photorhabdus luminescens subsp. laumondii TTO1]
- gi|49610490|emb|CAG73935.1|_1:115 conserved hypothetical protein [Erwinia carotovora subsp. atroseptica SCRI1043]
- gi|50119964|ref|YP_049131.1| hypothetical protein ECA1024 [Erwinia carotovora subsp. atroseptica SCRI1043]
- gi|75430515|ref|ZP_00732826.1|_1:105 uncharacterized BCR [Actinobacillus succinogenes 130Z]
- gi|74276504|gb|EAO50107.1| uncharacterized BCR [Actinobacillus succinogenes 130Z]
- gi|56178968|gb|AAV81690.1|_1:113 Uncharacterized conserved protein [Idiomarina loihiensis L2TR]
- gi|56459958|ref|YP_155239.1| hypothetical protein IL0850 [Idiomarina loihiensis L2TR]
- gi|23466689|ref|ZP_00122276.1|_1:103 COG3098: Uncharacterized protein conserved in bacteria [Haemophilus somnus 129PT]
- gi|78689634|ref|ZP_00854293.1|_6:111 conserved hypothetical protein [Shewanella sp. MR-7]
- gi|78510923|gb|EAP24286.1| conserved hypothetical protein [Shewanella sp. MR-7]
- gi|26991365|ref|NP_746790.1|_1:110 hypothetical protein PP4681 [Pseudomonas putida KT2440]
- gi|24986430|gb|AAN70254.1| conserved hypothetical protein [Pseudomonas putida KT2440]
- gi|77385014|gb|ABA76527.1|_1:111 Protein of unknown function DUF446 [Pseudomonas fluorescens PfO-1]
- gi|77461011|ref|YP_350518.1| Protein of unknown function DUF446 [Pseudomonas fluorescens PfO-1]
- gi|67159490|ref|ZP_00420008.1|_1:109 Protein of unknown function DUF446 [Azotobacter vinelandii AvOP]
- gi|67084147|gb|EAM03641.1| Protein of unknown function DUF446 [Azotobacter vinelandii AvOP]
- gi|90413523|ref|ZP_01221514.1|_1:104 hypothetical protein P3TCK_25400 [Photobacterium profundum 3TCK]
- gi|90325455|gb|EAS41938.1| hypothetical protein P3TCK_25400 [Photobacterium profundum 3TCK]
- gi|82739465|ref|ZP_00902267.1|_2:109 conserved hypothetical protein [Pseudomonas putida F1]
- gi|82713472|gb|EAP48584.1| conserved hypothetical protein [Pseudomonas putida F1]
- gi|83644736|ref|YP_433171.1|_1:120 hypothetical protein HCH_01911 [Hahella chejuensis KCTC 2396]
- gi|83632779|gb|ABC28746.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396]
- gi|32044029|ref|ZP_00141130.1|_1:108 COG3098: Uncharacterized protein conserved in bacteria [Pseudomonas aeruginosa UCBPP-PA14]
- gi|107103797|ref|ZP_01367715.1| hypothetical protein PaerPA_01004868 [Pseudomonas aeruginosa PACS2]
- gi|89075425|ref|ZP_01161842.1|_1:105 hypothetical protein SKA34_21384 [Photobacterium sp. SKA34]
- gi|89048841|gb|EAR54411.1| hypothetical protein SKA34_21384 [Photobacterium sp. SKA34]
- gi|90580966|ref|ZP_01236767.1|_1:105 hypothetical protein VAS14_20931 [Vibrio angustum S14]
- gi|90437844|gb|EAS63034.1| hypothetical protein VAS14_20931 [Vibrio angustum S14]
- gi|82497021|ref|ZP_00882582.1|_6:111 conserved hypothetical protein [Shewanella sp. MR-4]
- gi|82404991|gb|EAP45670.1| conserved hypothetical protein [Shewanella sp. MR-4]
- gi|84323422|ref|ZP_00971492.1|_1:108 COG3098: Uncharacterized protein conserved in bacteria [Pseudomonas aeruginosa 2192]
- gi|85712032|ref|ZP_01043086.1|_1:113 hypothetical protein OS145_13064 [Idiomarina baltica OS145]
- gi|85694218|gb|EAQ32162.1| hypothetical protein OS145_13064 [Idiomarina baltica OS145]
- gi|78687350|ref|ZP_00852101.1|_6:111 conserved hypothetical protein [Shewanella sp. ANA-3]
- gi|78504920|gb|EAP18462.1| conserved hypothetical protein [Shewanella sp. ANA-3]
- gi|9950956|gb|AAG08084.1|_1:108 hypothetical protein PA4698 [Pseudomonas aeruginosa PAO1]
- gi|15599892|ref|NP_253386.1| hypothetical protein PA4698 [Pseudomonas aeruginosa PAO1]
- gi|84317324|ref|ZP_00965773.1| COG3098: Uncharacterized protein conserved in bacteria [Pseudomonas aeruginosa C3719]
- gi|70732565|ref|YP_262328.1|_1:107 Domain of unknown function, DUF445 superfamily [Pseudomonas fluorescens Pf-5]
- gi|68346864|gb|AAY94470.1| Domain of unknown function, DUF445 superfamily [Pseudomonas fluorescens Pf-5]
- gi|24373188|ref|NP_717231.1|_1:107 hypothetical protein SO1619 [Shewanella oneidensis MR-1]
- gi|24347406|gb|AAN54675.1| conserved hypothetical protein [Shewanella oneidensis MR-1]
- gi|84780447|dbj|BAE75224.1|_1:105 conserved hypothetical protein [Sodalis glossinidius str. 'morsitans']
- gi|85059927|ref|YP_455629.1| hypothetical protein SG1949 [Sodalis glossinidius str. 'morsitans']
- gi|94412475|ref|ZP_01292394.1|_1:108 hypothetical protein PaerP_01005726 [Pseudomonas aeruginosa PA7]
- gi|32033503|ref|ZP_00133830.1|_1:103 COG3098: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
- gi|49080098|gb|AAT49970.1|_1:109 PA4698 [synthetic construct]
- gi|104783659|ref|YP_610157.1|_1:108 hypothetical protein PSEEN4713 [Pseudomonas entomophila L48]
- gi|95112646|emb|CAK17374.1| conserved hypothetical protein [Pseudomonas entomophila L48]
- gi|59711219|ref|YP_203995.1|_1:102 hypothetical protein VF0612 [Vibrio fischeri ES114]
- gi|59479320|gb|AAW85107.1| conserved hypothetical protein [Vibrio fischeri ES114]
- gi|46914529|emb|CAG21308.1|_1:104 conserved hypothetical protein [Photobacterium profundum SS9]
- gi|54310090|ref|YP_131110.1| hypothetical protein PBPRA2974 [Photobacterium profundum SS9]
- gi|77814791|ref|ZP_00814044.1|_1:106 Protein of unknown function DUF446 [Shewanella putrefaciens CN-32]
- gi|77810198|gb|EAO94581.1| Protein of unknown function DUF446 [Shewanella putrefaciens CN-32]
- gi|82740436|ref|ZP_00903176.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
- gi|82722173|gb|EAP56999.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
- gi|77952780|ref|ZP_00817193.1|_5:112 conserved hypothetical protein [Marinobacter aquaeolei VT8]
- gi|77868337|gb|EAO99607.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
- gi|76875807|emb|CAI87028.1|_1:105 conserved protein of unknown function [Pseudoalteromonas haloplanktis TAC125]
- gi|77360896|ref|YP_340471.1| hypothetical protein PSHAa1971 [Pseudoalteromonas haloplanktis TAC125]
- gi|90022025|ref|YP_527852.1|_1:108 Glyoxalase I [Saccharophagus degradans 2-40]
- gi|89951625|gb|ABD81640.1| Glyoxalase I [Saccharophagus degradans 2-40]
- gi|91792902|ref|YP_562553.1|_1:103 protein of unknown function DUF446 [Shewanella denitrificans OS217]
- gi|91714904|gb|ABE54830.1| protein of unknown function DUF446 [Shewanella denitrificans OS217]
- gi|71144075|gb|AAZ24548.1|_3:115 conserved hypothetical protein [Colwellia psychrerythraea 34H]
- gi|71278335|ref|YP_270318.1| hypothetical protein CPS_3650 [Colwellia psychrerythraea 34H]
- gi|84394419|ref|ZP_00993136.1|_1:103 hypothetical protein V12B01_21986 [Vibrio splendidus 12B01]
- gi|84374952|gb|EAP91882.1| hypothetical protein V12B01_21986 [Vibrio splendidus 12B01]
- gi|88857815|ref|ZP_01132457.1|_1:103 hypothetical protein PTD2_10534 [Pseudoalteromonas tunicata D2]
- gi|88819432|gb|EAR29245.1| hypothetical protein PTD2_10534 [Pseudoalteromonas tunicata D2]
- gi|86146895|ref|ZP_01065214.1|_1:103 hypothetical protein MED222_21074 [Vibrio sp. MED222]
- gi|85835347|gb|EAQ53486.1| hypothetical protein MED222_21074 [Vibrio sp. MED222]
- gi|68542350|ref|ZP_00582082.1|_8:113 Protein of unknown function DUF446 [Shewanella baltica OS155]
- gi|68519943|gb|EAN43461.1| Protein of unknown function DUF446 [Shewanella baltica OS155]
- gi|78367265|ref|ZP_00837536.1|_1:105 conserved hypothetical protein [Shewanella sp. PV-4]
- gi|78360632|gb|EAP02465.1| conserved hypothetical protein [Shewanella sp. PV-4]
- gi|75819611|ref|ZP_00749683.1|_1:102 COG3098: Uncharacterized protein conserved in bacteria [Vibrio cholerae V51]
- gi|9655342|gb|AAF94049.1|_1:102 conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
- gi|15640903|ref|NP_230534.1| hypothetical protein VC0887 [Vibrio cholerae O1 biovar eltor str. N16961]
- gi|75831905|ref|ZP_00761164.1| COG3098: Uncharacterized protein conserved in bacteria [Vibrio cholerae MO10]
- gi|75826205|ref|ZP_00755640.1| COG3098: Uncharacterized protein conserved in bacteria [Vibrio cholerae O395]
- gi|75814629|ref|ZP_00745195.1| COG3098: Uncharacterized protein conserved in bacteria [Vibrio cholerae V52]
- gi|69949555|ref|ZP_00637552.1|_15:119 conserved hypothetical protein [Shewanella frigidimarina NCIMB 400]
- gi|69166779|gb|EAN75738.1| conserved hypothetical protein [Shewanella frigidimarina NCIMB 400]
- gi|496598|emb|CAA55982.1|_1:96 unnamed protein product [Pectobacterium carotovorum]
- gi|2501677|sp|Q47417|TRUC_PECCC tRNA pseudouridine synthase C (tRNA-uridine isomerase C) (tRNA pseudouridylate synthase C) [Taxonomy]
- gi|87121289|ref|ZP_01077179.1|_19:126 hypothetical protein MED121_23269 [Marinomonas sp. MED121]
- gi|86163446|gb|EAQ64721.1| hypothetical protein MED121_23269 [Marinomonas sp. MED121]
- gi|37199495|dbj|BAC95326.1|_1:102 conserved hypothetical protein [Vibrio vulnificus YJ016]
- gi|27361349|gb|AAO10257.1| Conserved hypothetical protein [Vibrio vulnificus CMCP6]
- gi|27365202|ref|NP_760730.1| hypothetical protein VV11854 [Vibrio vulnificus CMCP6]
- gi|37680746|ref|NP_935355.1| hypothetical protein VV2562 [Vibrio vulnificus YJ016]
- gi|33152258|ref|NP_873611.1|_13:117 hypothetical protein HD1139 [Haemophilus ducreyi 35000HP]
- gi|33148480|gb|AAP96000.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
- gi|88799788|ref|ZP_01115362.1|_1:102 hypothetical protein MED297_14445 [Reinekea sp. MED297]
- gi|88777522|gb|EAR08723.1| hypothetical protein MED297_14445 [Reinekea sp. MED297]
- gi|90407470|ref|ZP_01215653.1|_6:113 hypothetical protein PCNPT3_11167 [Psychromonas sp. CNPT3]
- gi|90311391|gb|EAS39493.1| hypothetical protein PCNPT3_11167 [Psychromonas sp. CNPT3]
- gi|76793774|ref|ZP_00776256.1|_5:116 similar to Uncharacterized protein conserved in bacteria [Pseudoalteromonas atlantica T6c]
- gi|76590956|gb|EAO67164.1| similar to Uncharacterized protein conserved in bacteria [Pseudoalteromonas atlantica T6c]
- gi|106882075|ref|ZP_01349478.1|_8:113 conserved hypothetical protein [Psychromonas ingrahamii 37]
- gi|106762462|gb|EAT19343.1| conserved hypothetical protein [Psychromonas ingrahamii 37]
- gi|68547220|ref|ZP_00586760.1|_31:135 similar to Uncharacterized protein conserved in bacteria [Shewanella amazonensis SB2B]
- gi|68515136|gb|EAN38857.1| similar to Uncharacterized protein conserved in bacteria [Shewanella amazonensis SB2B]
- gi|90416372|ref|ZP_01224304.1|_1:92 hypothetical protein GB2207_11858 [marine gamma proteobacterium HTCC2207]
- gi|90332097|gb|EAS47311.1| hypothetical protein GB2207_11858 [marine gamma proteobacterium HTCC2207]
- gi|94969810|ref|YP_591858.1|_1:106 tRNA pseudouridine synthase C [Acidobacteria bacterium Ellin345]
- gi|94551860|gb|ABF41784.1| tRNA pseudouridine synthase C [Acidobacteria bacterium Ellin345]
- gi|88793831|ref|ZP_01109544.1|_5:115 hypothetical protein MADE_15404 [Alteromonas macleodii 'Deep ecotype']
- gi|88774996|gb|EAR06248.1| hypothetical protein MADE_15404 [Alteromonas macleodii 'Deep ecotype']
- gi|91796459|gb|ABE58598.1|_1:107 conserved hypothetical protein [Chromohalobacter salexigens DSM 3043]
- gi|92113369|ref|YP_573297.1| hypothetical protein Csal_1243 [Chromohalobacter salexigens DSM 3043]

                                10        20        30            40   
                                |         |         |             |   
   1 ...M..T..T.H...D...R.V...RLQLQALEALLREHQHWRNDEPQ....PHQFNSTQPFFMD
   2 ...M..N..T.E...N...Q.V...RQSLQDIELAMRAIDLWQIVPPQ....AEAFESNEPFSID
   3 ...M..N..I.E...N...K.V...RQSLQDIELAMRAIDLWQTVPPQ....AEAFESNEPFSID
   4 ...M..N..T.E...N...Q.V...RQSLQNIELAMREIDLWQTVPPQ....AEAFESNEPFSID
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           50        60        70         80                 90        
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  58 PVLLIELLLKD-----------...
  59 ALGEFDRLIGGPSG--------...
  60 LLAEFDQLISPSA---------...
  61 LCHAIDALGK------------...
  62 VTRELDNLFKAQ----------...
  63 LLNELDMLLNEPR---------...
  64 ALEEMDRLLSSGGR--------...
  65 LLTALDAFLGEPNE--------...
  66 TLEQIDALISN-----------...
  67 QLIAMDDFINAAK---------...
  68 VIQKIDKALAEKVSKGE-----...
  69 TIQSIDEVCA------------...
  70 IISGFDQLFVVQ----------...
  71 TIQSIDEVCA------------...
  72 VLNELDMLLNESR---------...
  73 IINQLDEHLSGSN---------...
  74 VIQQIDKVCQ------------...
  75 VIQQIDKVCQ------------...
  76 QLQQFDTLLSQR----------...
  77 VSSS------------------...
  78 ALEAIDACLNQD----------...
  79 ILRTIDEVSQ------------...
  80 PILLLELLLKD-----------...
  81 LIRQLDELI-------------...
  82 LLEQIDTLITENKIC-------...
  83 VLAQIDLAFCGAE---------...
  84 IIGRIDLLFSE-----------...
  85 ILANLDDAVNGK----------...
  86 ----------------------...
  87 RLCDFDALFS------------...
  88 QLQTIDDIASEKGV--------...
  89 AVAEVDRIVTEA----------...