# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 7.94e-02 d.144.1.7 67011 1jhgA 101 1.17e+00 1jhgA a.4.12.1 19009 2furA 209 1.91e+00 1opjA 293 2.13e+00 d.144.1.7 87230 1guxA 218 2.22e+00 1guxA a.74.1.3 18388 2end 138 2.29e+00 2end a.18.1.1 16400 2bbrA 195 2.36e+00 1m6kA 251 2.49e+00 e.3.1.1 78695 1zd3A 555 2.49e+00 1zboA 210 2.94e+00 2iu5A 195 2.95e+00 1vgmA 378 3.26e+00 1zv1A 65 3.38e+00 1sedA 117 3.72e+00 a.219.1.1 105449 1e6iA 121 4.21e+00 1b91A a.29.2.1 16969 1fpoA 171 4.28e+00 1fpoA a.2.3.1,a.23.1.1 15693,16487 1m9xC 146 4.57e+00 a.73.1.1 84907 2gsfA 373 5.04e+00 1yvhA 329 6.08e+00 1ugpA 203 6.21e+00 d.149.1.1 107831 1o8rA 94 6.41e+00 d.234.1.1 86677 1sz2A 332 6.43e+00 1iyhA 198 6.87e+00 a.45.1.1,c.47.1.5 83790,83791 1u59A 287 7.08e+00 d.144.1.7 107681 1zejA 293 8.03e+00 1xo0A 324 8.09e+00 1yqyA 523 8.10e+00 1umgA 362 8.18e+00 d.280.1.1 107956 1b4pA 217 8.28e+00 a.45.1.1,c.47.1.5 83158,83159 1n3kA 130 8.33e+00 a.77.1.4 79965 1ux5A 411 9.69e+00 a.207.1.1 100144 1lwbA 122 9.99e+00 a.133.1.3 84728 1ggzA 148 1.00e+01 a.39.1.5 70176 1uekA 275 1.06e+01 d.14.1.5,d.58.26.5 88483,88484 5csmA 256 1.11e+01 5csmA a.130.1.2 19494 1x9zA 188 1.17e+01 2cvdA 198 1.17e+01 1ufzA 83 1.23e+01 a.5.9.1 107821 1u7lA 392 1.28e+01 1jy2N 53 1.29e+01 h.1.8.1 67440 1li5A 461 1.35e+01 a.27.1.1,c.26.1.1 73912,73913 1jeyA 609 1.38e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1hssA 124 1.39e+01 1bea a.52.1.2 17819 1amuA 563 1.40e+01 1amuA e.23.1.1 43351 1jhdA 396 1.40e+01 b.122.1.3,c.26.1.5 66712,66713 1h6hA 143 1.41e+01 d.189.1.1 65681 1mzbA 136 1.47e+01 a.4.5.42 91497 2gsvA 80 1.47e+01 2bzlA 325 1.49e+01 1m7sA 484 1.54e+01 e.5.1.1 74574 1di6A 195 1.58e+01 1di6A c.57.1.1 33863 1t8kA 77 1.58e+01 a.28.1.1 106666 1ulyA 192 1.68e+01 2aheA 267 1.74e+01 1kblA 873 1.78e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1es5A 262 1.79e+01 1skf e.3.1.1 42679 1b5eA 246 1.90e+01 1b5eA d.117.1.1 41056 1or0A 160 1.90e+01 d.153.1.2 93445 1hx1B 114 1.91e+01 1hx1B a.7.7.1 61350 2c5rA 67 2.00e+01 1c7nA 399 2.13e+01 1d2fA c.67.1.3 34413 1vekA 84 2.19e+01 1mp8A 281 2.21e+01 d.144.1.7 91384 1k6iA 352 2.22e+01 c.2.1.2 68223 1qo7A 394 2.23e+01 1qo7A c.69.1.11 34697 1eumA 165 2.24e+01 1eumA a.25.1.1 59507 1n1cA 217 2.27e+01 a.184.1.1 85254 1g291 372 2.28e+01 1g291 1q8cA 151 2.37e+01 a.79.1.2 96202 1a6q 382 2.38e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1tzvA 142 2.41e+01 a.79.1.1 107526 1kq6A 141 2.46e+01 d.189.1.1 91020 1obbA 480 2.51e+01 c.2.1.5,d.162.1.2 86760,86761 2b7aA 293 2.62e+01 1or7A 194 2.64e+01 a.4.13.2,a.177.1.1 87332,87333 1knyA 253 2.64e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1bd8 156 2.70e+01 1bd8 d.211.1.1 19157 1pq1A 196 2.71e+01 f.1.4.1 94986 1t0cA 31 2.71e+01 2afdA 88 2.71e+01 1n8vA 112 2.71e+01 a.118.21.1 85457 1ylmA 144 2.71e+01 2azeA 155 2.72e+01 1eu8A 409 2.86e+01 1eu8A c.94.1.1 59502 1u96A 69 2.88e+01 1w2fA 276 2.91e+01 d.143.1.3 109125 2fu4A 83 2.93e+01 2ew2A 316 2.96e+01 1qgtA 149 2.99e+01 1qgtA a.62.1.1 18135 1o9rA 162 3.01e+01 a.25.1.1 86706 1xbbA 291 3.11e+01 1x6vA 630 3.15e+01 1jogA 146 3.23e+01 a.24.16.2 77142 1iicA 422 3.23e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1o65A 246 3.24e+01 b.58.1.2 92544 1i1rB 181 3.25e+01 1i1rB a.26.1.1 61548 2dp5A 332 3.26e+01 1wmaA 276 3.29e+01 2d2eA 250 3.30e+01 1o5kA 306 3.31e+01 c.1.10.1 92504 1tns 76 3.32e+01 1qpmA a.6.1.7 16228 2g0qA 173 3.34e+01 2ctoA 93 3.36e+01 1gcqC 70 3.37e+01 1gcpA b.34.2.1 60436 2a9iA 113 3.39e+01 1qkkA 155 3.40e+01 1dbwA c.23.1.1 31104 1zq9A 285 3.40e+01 1ds1A 324 3.41e+01 1drtA b.82.2.2 28127 1w9iA 770 3.42e+01 2c4jA 218 3.46e+01 2b1xA 470 3.51e+01 2f60K 64 3.53e+01 1k2xA 177 3.55e+01 d.153.1.5 90929 1vkmA 297 3.56e+01 c.138.1.1 108670 1yw0A 276 3.60e+01 1bjt 793 3.65e+01 1bjt e.11.1.1 43249 1zhxA 438 3.69e+01 1z8uA 102 3.69e+01 1r0pA 312 3.71e+01 d.144.1.7 96734 2f3yA 148 3.72e+01 1w2wA 211 3.73e+01 c.124.1.5 109130 1t0qA 498 3.74e+01 a.25.1.2 106220 1mw5A 187 3.77e+01 d.259.1.1 91477 1vyiA 112 3.78e+01 2esnA 310 3.78e+01 1lghA 56 3.79e+01 1lghA f.3.1.1 43733 1sszA 34 3.88e+01 j.35.1.1 105999 2fb5A 205 3.96e+01 1jk8B 190 4.08e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1v54C 261 4.12e+01 f.25.1.1 100324 1xgkA 352 4.18e+01 1l3pA 102 4.20e+01 a.24.17.1 84520 1b79A 119 4.21e+01 1b79A a.81.1.1 18451 1v2dA 381 4.32e+01 c.67.1.1 108281 1rcwA 231 4.32e+01 a.132.1.4 97299 1pdo 135 4.39e+01 1pdo c.54.1.1 33376 2a6cA 83 4.39e+01 1yxcA 292 4.43e+01 1pzwA 80 4.54e+01 g.39.1.10 95483 2c31A 568 4.56e+01 1b0xA 94 4.58e+01 1b4fA a.60.1.2 17933 1k8kF 168 4.59e+01 d.198.2.1 68312 1y0uA 96 4.60e+01 1sb0A 87 4.63e+01 a.12.1.1 98789 1x31D 99 4.70e+01 1gcvB 136 4.72e+01 1cg5B a.1.1.2 15589 1b35A 260 4.75e+01 1b35A b.121.4.1 23333 2ccmA 191 4.78e+01 1eh8A 207 4.83e+01 1sfe a.4.2.1,c.55.7.1 16077,33752 1alvA 173 4.84e+01 1alvA a.39.1.8 17370 3tmkA 216 4.85e+01 3tmkA c.37.1.1 31920 2fj6A 82 4.89e+01 2culA 232 4.91e+01 1v9mA 323 4.96e+01 f.40.1.1 100543 1yarA 233 4.97e+01 1wekA 217 4.98e+01 1n7hA 381 4.98e+01 c.2.1.2 80250 1n6zA 105 5.01e+01 d.263.1.1 85369 1mtyG 162 5.02e+01 1mtyG a.23.3.1 16498 1z47A 355 5.02e+01 1nwaA 203 5.03e+01 d.58.28.1 86295 1qpcA 279 5.06e+01 1fgkA d.144.1.7 41685 1t46A 313 5.26e+01 d.144.1.7 106397 1l6sA 323 5.28e+01 c.1.10.3 73627 1exrA 148 5.28e+01 1cll a.39.1.5 17299 1hulA 108 5.30e+01 1hulA a.26.1.2 16865 1mw9X 592 5.32e+01 e.10.1.1 91480 2aawA 222 5.33e+01 1kf6D 119 5.34e+01 f.21.2.2 72400 1sq5A 308 5.40e+01 c.37.1.6 105882 1kr7A 110 5.44e+01 a.1.1.4 72890 2a14A 263 5.52e+01 1nh1A 330 5.58e+01 e.45.1.1 91871 1xwmA 217 5.71e+01 1wyuA 438 5.72e+01 1r6xA 395 5.75e+01 b.122.1.3,c.26.1.5 97167,97168 2b4nA 42 5.76e+01 1voqa 90 5.79e+01 1t3wA 148 5.80e+01 1m22A 503 5.84e+01 c.117.1.1 78464 2g19A 244 5.86e+01 2gdjA 264 5.87e+01 1sqgA 429 5.93e+01 a.79.1.3,c.66.1.38 105912,105913 2fiyA 309 5.96e+01 1v54E 109 5.97e+01 a.118.11.1 100326 2f7tA 227 5.97e+01 2agaA 190 6.02e+01 1u4bA 580 6.05e+01 c.55.3.5,e.8.1.1 107664,107665 1lddA 74 6.06e+01 a.4.5.34 73841 1h6kA 757 6.14e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1pa7A 130 6.16e+01 a.40.1.1 94410 1zjjA 263 6.19e+01 2c5qA 240 6.21e+01 1e1oA 504 6.21e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1x4tA 92 6.26e+01 1qwgA 251 6.32e+01 c.1.27.1 96473 1musA 477 6.38e+01 c.55.3.4 79494 1sknP 92 6.39e+01 1sknP a.37.1.1 17127 1wwuA 99 6.40e+01 1vls 146 6.56e+01 1vls a.24.2.1 16532 1s6lA 212 6.58e+01 1zczA 464 6.60e+01 1w7jB 151 6.75e+01 1ni4A 365 6.75e+01 c.36.1.11 85728 2bl8A 103 6.77e+01 1yvrA 538 6.79e+01 1h3fA 432 6.79e+01 c.26.1.1,d.66.1.4 76631,76632 1m48A 133 6.81e+01 a.26.1.2 74443 1z0pA 84 6.87e+01 1im5A 180 6.93e+01 c.33.1.3 66211 2ethA 154 6.93e+01 2cwyA 94 7.02e+01 1i5jA 79 7.03e+01 1i5jA j.39.1.1 61788 1fx2A 235 7.05e+01 1fx2A d.58.29.1 39430 1qntA 176 7.06e+01 1sfe a.4.2.1,c.55.7.1 16074,33749 1jy2P 48 7.06e+01 h.1.8.1 67442 1s5dA 240 7.06e+01 d.166.1.1 98541 1v2xA 194 7.07e+01 c.116.1.1 100274 2aamA 309 7.09e+01 1fgkA 310 7.09e+01 1fgkA d.144.1.7 41693 1d2fA 390 7.10e+01 1d2fA c.67.1.3 34411 1v74A 107 7.12e+01 d.243.1.1 100442 1j1vA 94 7.14e+01 a.4.12.2 83981 1kf6C 130 7.22e+01 f.21.2.2 72399 1vdwA 254 7.23e+01 e.7.1.1 100569 1csh 435 7.30e+01 1csh a.103.1.1 18880 2bl0C 142 7.35e+01 1jnrB 150 7.41e+01 d.58.1.5 66969 2b1eA 564 7.47e+01 1k6kA 143 7.51e+01 a.174.1.1 77274 1l8dA 112 7.55e+01 h.4.12.1 73687 1aua 296 7.55e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1tn6A 382 7.55e+01 1z0wA 207 7.59e+01 1txdA 385 7.61e+01 a.87.1.1,b.55.1.1 107422,107423 1zbfA 142 7.64e+01 1d2zA 108 7.74e+01 1d2zA a.77.1.2 18437 1nu7D 282 7.82e+01 a.8.6.1,a.8.6.1 92191,92192 2axcA 264 7.82e+01 1hdiA 413 7.83e+01 16pk c.86.1.1 60964 1ajsA 412 7.88e+01 1ajsA c.67.1.1 34276 1gdeA 389 7.90e+01 c.67.1.1 60456 1fp3A 402 7.95e+01 1fp3A a.102.1.3 18842 1p4xA 250 7.98e+01 a.4.5.28,a.4.5.28 87784,87785 2h21A 440 7.98e+01 2a2fX 325 8.04e+01 1jb0I 38 8.06e+01 1jb0I f.23.17.1 62826 2aw42 46 8.06e+01 1ycsB 239 8.13e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1pyoB 105 8.13e+01 1xn7A 78 8.17e+01 1nmeB 92 8.17e+01 1zs3A 182 8.20e+01 1ru3A 732 8.22e+01 e.26.1.3 97835 2h0uA 217 8.22e+01 1qczA 169 8.33e+01 1qczA c.23.8.1 31276 1l2wI 69 8.33e+01 d.198.1.1 73526 2g8yA 385 8.35e+01 2d2sA 235 8.38e+01 1su0B 159 8.40e+01 d.224.1.2 106015 1wv9A 94 8.47e+01 1kqqA 139 8.48e+01 a.4.3.1 72885 1yuiA 54 8.55e+01 1yuiA g.37.1.1 45073 1od6A 160 8.56e+01 c.26.1.3 86836 2a6hE 99 8.57e+01 1n1fA 159 8.69e+01 a.26.1.3 79803 1r6wA 322 8.72e+01 c.1.11.2,d.54.1.1 97165,97166 1jm0A 50 8.75e+01 k.8.1.1 66870 1llmC 88 8.80e+01 g.37.1.1,g.37.1.1 91059,91060 1whuA 104 8.81e+01 2gtqA 867 8.83e+01 1y88A 199 8.90e+01 1xkyA 301 8.95e+01 1vmgA 95 8.95e+01 2bv5A 282 8.98e+01