# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 3.87e-01 d.144.1.7 67011 1m6jA 261 7.52e-01 c.1.1.1 78693 1m2kA 249 2.67e+00 c.31.1.5 84754 2gsfA 373 4.25e+00 1w1oA 534 4.90e+00 d.58.32.4,d.145.1.1 109071,109072 2fqmA 75 5.68e+00 2fy6A 143 5.81e+00 1d1qA 161 6.20e+00 1dg9A c.44.1.1 32642 1kblA 873 6.41e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1i9gA 280 6.94e+00 c.66.1.13 62090 1sr2A 116 8.80e+00 1ooeA 236 9.07e+00 c.2.1.2 87196 1gqeA 365 9.68e+00 e.38.1.1 70351 2ar0A 541 1.04e+01 1q5zA 177 1.05e+01 a.196.1.1 95954 2a6cA 83 1.25e+01 1q0gA 117 1.38e+01 a.24.22.1 104428 2g62A 325 1.42e+01 1ogqA 313 1.43e+01 c.10.2.8 86996 1zd3A 555 1.45e+01 2aheA 267 1.50e+01 2fmcA 82 1.53e+01 1t6uA 117 1.59e+01 a.24.22.1 106584 1pzqA 60 1.62e+01 a.34.3.1 95466 1z6oA 212 1.66e+01 1z0wA 207 1.72e+01 1df7A 159 1.74e+01 3dfr c.71.1.1 34885 1n6zA 105 1.85e+01 d.263.1.1 85369 1o4vA 183 1.92e+01 c.23.8.1 86628 1whrA 124 2.11e+01 1x6vA 630 2.14e+01 2furA 209 2.19e+01 2ddfA 257 2.19e+01 1thg 544 2.20e+01 1thg c.69.1.17 34763 1zccA 248 2.26e+01 1clvI 32 2.26e+01 1qfdA g.3.2.1 44075 2db0A 253 2.32e+01 1j1vA 94 2.37e+01 a.4.12.2 83981 1ewfA 456 2.45e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 2b7aA 293 2.54e+01 2esnA 310 2.54e+01 1lwdA 413 2.60e+01 c.77.1.1 78265 1z2nX 324 2.67e+01 1yzxA 226 2.68e+01 1m3uA 264 2.70e+01 c.1.12.8 84784 1jmtB 28 2.71e+01 2bv5A 282 2.78e+01 1jsmA 325 2.82e+01 b.19.1.2 63264 2fu4A 83 2.84e+01 1knvA 293 2.89e+01 c.52.1.7 68707 1h4vB 421 3.07e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1y7wA 291 3.19e+01 1tujA 123 3.40e+01 1vqsA 116 3.41e+01 1c0pA 363 3.41e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2fpmA 322 3.44e+01 1t6aA 126 3.44e+01 d.129.8.1 106555 1nox 205 3.46e+01 1nox d.90.1.1 40242 2acvA 463 3.50e+01 1qgtA 149 3.58e+01 1qgtA a.62.1.1 18135 1bg2 325 3.62e+01 1bg2 c.37.1.9 32189 1qrvA 73 3.65e+01 1cktA a.21.1.1 16425 2fywA 267 3.73e+01 1xeaA 323 3.77e+01 c.2.1.3,d.81.1.5 109572,109573 1zv1A 65 3.85e+01 1d4xG 126 3.91e+01 1d0nA d.109.1.1 59109 1w2iA 91 3.93e+01 d.58.10.1 109127 2gboA 104 3.94e+01 1fk5A 93 3.98e+01 1rzl a.52.1.1 59866 1sczA 233 4.04e+01 c.43.1.1 98802 1jb0I 38 4.09e+01 1jb0I f.23.17.1 62826 1bquA 215 4.10e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1m7vA 363 4.20e+01 d.174.1.1 78748 1yz7A 188 4.23e+01 2g38B 198 4.32e+01 2fiyA 309 4.38e+01 1dp4A 435 4.47e+01 1dp4A c.93.1.1 35710 1ka9H 200 4.48e+01 c.23.16.1 77308 1qtnB 95 4.69e+01 1pauB 3fapB 94 4.69e+01 1nsgB a.24.7.1 16612 1w2fA 276 4.71e+01 d.143.1.3 109125 1x4tA 92 4.77e+01 1xgsA 295 4.79e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 2gdjA 264 4.80e+01 1k8kF 168 4.83e+01 d.198.2.1 68312 1ufaA 520 4.87e+01 a.8.3.3,c.6.2.4 99329,99330 1hfeL 421 4.90e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 2arcA 164 4.94e+01 2arcA b.82.4.1 28148 1yozA 116 4.96e+01 1kq6A 141 5.14e+01 d.189.1.1 91020 2cdqA 510 5.14e+01 1bf5A 545 5.23e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1jmxA 494 5.30e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1dkzA 219 5.38e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 2c5rA 67 5.42e+01 2ezh 75 5.44e+01 2ezh a.4.1.2 16029 1xkmB 25 5.46e+01 1guxA 218 5.48e+01 1guxA a.74.1.3 18388 1v9vA 114 5.49e+01 1apyA 162 5.55e+01 1apyA d.153.1.5 42004 2fupA 168 5.55e+01 1p68A 102 5.56e+01 k.8.1.1 94158 1yt3A 375 5.60e+01 1amuA 563 5.66e+01 1amuA e.23.1.1 43351 2an3A 289 5.70e+01 1wmaA 276 5.71e+01 1opjA 293 5.74e+01 d.144.1.7 87230 7taa 478 5.93e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1h5qA 265 5.95e+01 1cydA c.2.1.2 60643 1tuaA 191 5.97e+01 d.51.1.1,d.51.1.1 107321,107322 1mjhA 162 5.97e+01 1mjhA c.26.2.4 31639 1x6iA 91 6.01e+01 1eybA 471 6.03e+01 1ey2A b.82.1.4 28115 2bkyX 89 6.07e+01 1qsdA 106 6.25e+01 1qsdA a.7.5.1 16335 1x7yA 400 6.45e+01 1xg2B 153 6.46e+01 1d6gA 47 6.47e+01 1d6gA g.33.1.1 44976 1u04A 771 6.48e+01 b.34.14.1,c.55.3.10 107539,107540 1elrA 131 6.50e+01 1a17 a.118.8.1 19209 2a2rA 210 6.61e+01 1h4wA 224 6.61e+01 b.47.1.2 65622 1lvfA 110 6.71e+01 a.47.2.1 74280 1p4xA 250 6.83e+01 a.4.5.28,a.4.5.28 87784,87785 2f8mA 244 6.86e+01 1f7uA 607 6.89e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1ngnA 155 7.01e+01 a.96.1.2 85697 1lbkA 208 7.11e+01 a.45.1.1,c.47.1.5 73809,73810 1p2fA 220 7.13e+01 a.4.6.1,c.23.1.1 87720,87721 1oyjA 231 7.14e+01 a.45.1.1,c.47.1.5 87597,87598 1vf1A 229 7.38e+01 1kv4A 42 7.42e+01 j.4.1.3 73051 1es5A 262 7.42e+01 1skf e.3.1.1 42679 1x6oA 174 7.55e+01 b.34.5.2,b.40.4.5 109493,109494 1i5nA 146 7.58e+01 1i5nA a.24.10.3 61805 1q9uA 130 7.62e+01 d.129.7.1 96314 1d5rA 324 7.63e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1q4uA 151 7.66e+01 d.38.1.5 95828 1wr2A 238 8.04e+01 1fs1B 141 8.06e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1wdcA 64 8.07e+01 1wdcA 1gdeA 389 8.09e+01 c.67.1.1 60456 1qkrA 188 8.09e+01 1qkrA a.24.9.1 16628 1voqa 90 8.15e+01 1eb6A 177 8.16e+01 d.92.1.12 64895 1o3uA 135 8.23e+01 a.24.16.3 86615 1ymtA 246 8.28e+01 1msc 129 8.29e+01 1msc d.85.1.1 40039 1jatA 155 8.30e+01 1u9aA d.20.1.1 62818 1u00A 227 8.33e+01 1eumA 165 8.33e+01 1eumA a.25.1.1 59507 1im5A 180 8.37e+01 c.33.1.3 66211 1sz2A 332 8.49e+01 1lvaA 258 8.62e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1tzpA 255 8.65e+01 d.65.1.3 107520 1p4oA 322 8.66e+01 d.144.1.7 87775 1zq9A 285 8.82e+01 2h0uA 217 8.90e+01 1dkqA 410 8.92e+01 1dklA c.60.1.2 33998 2arzA 247 8.94e+01 2g19A 244 8.95e+01 2cvdA 198 8.98e+01