# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 1.39e-01 1jpaA 312 3.57e-01 d.144.1.7 67011 1zejA 293 9.05e-01 1jhgA 101 9.66e-01 1jhgA a.4.12.1 19009 1qfxA 460 1.12e+00 1qfxA c.60.1.2 33994 2c4jA 218 1.15e+00 1kblA 873 1.40e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1zd3A 555 1.56e+00 1bd8 156 1.80e+00 1bd8 d.211.1.1 19157 2fu4A 83 1.86e+00 2fiyA 309 1.98e+00 1eemA 241 2.00e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1mzbA 136 2.04e+00 a.4.5.42 91497 1w1oA 534 2.36e+00 d.58.32.4,d.145.1.1 109071,109072 1b4pA 217 2.39e+00 a.45.1.1,c.47.1.5 83158,83159 1zv1A 65 2.44e+00 1qwoA 442 2.53e+00 c.60.1.2 104620 2iu5A 195 3.10e+00 1ufaA 520 3.54e+00 a.8.3.3,c.6.2.4 99329,99330 1jk8B 190 4.37e+00 1iakB b.1.1.2,d.19.1.1 63147,63148 1okcA 297 4.76e+00 f.42.1.1 93248 1zboA 210 4.81e+00 1im5A 180 4.82e+00 c.33.1.3 66211 2gsvA 80 5.03e+00 1x6vA 630 5.13e+00 1d8wA 426 6.33e+00 1de5A c.1.15.2 29394 1sszA 34 6.41e+00 j.35.1.1 105999 1jb0I 38 7.11e+00 1jb0I f.23.17.1 62826 1k6iA 352 7.13e+00 c.2.1.2 68223 1hdiA 413 7.81e+00 16pk c.86.1.1 60964 1z2uA 150 8.18e+00 2gsfA 373 8.35e+00 1zq9A 285 8.67e+00 2furA 209 9.15e+00 1m98A 317 1.02e+01 a.175.1.1,d.17.4.6 78866,78867 1gweA 503 1.03e+01 e.5.1.1 70667 1g5aA 628 1.11e+01 b.71.1.1,c.1.8.1 65152,65153 1sq5A 308 1.11e+01 c.37.1.6 105882 1es5A 262 1.14e+01 1skf e.3.1.1 42679 2ctoA 93 1.14e+01 1z2nX 324 1.15e+01 1vls 146 1.15e+01 1vls a.24.2.1 16532 1jhdA 396 1.16e+01 b.122.1.3,c.26.1.5 66712,66713 1whrA 124 1.20e+01 2b7aA 293 1.32e+01 2fh1A 344 1.33e+01 1zkeA 83 1.37e+01 1kpsB 171 1.38e+01 a.118.12.1 68787 1p8xA 344 1.39e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 2aheA 267 1.39e+01 2ddfA 257 1.47e+01 1gcqC 70 1.51e+01 1gcpA b.34.2.1 60436 2afwA 329 1.52e+01 1ycsB 239 1.55e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1jmtB 28 1.59e+01 1i9gA 280 1.63e+01 c.66.1.13 62090 1x91A 153 1.64e+01 1no1A 126 1.65e+01 a.179.1.1 85913 1pn0A 665 1.71e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1m6kA 251 1.74e+01 e.3.1.1 78695 2bbrA 195 1.80e+01 1tzvA 142 1.81e+01 a.79.1.1 107526 1im8A 244 1.85e+01 c.66.1.14 66212 1t1uA 639 1.88e+01 1tkeA 224 1.89e+01 2gdjA 264 1.91e+01 1xgkA 352 1.94e+01 2gw6A 123 1.95e+01 1n1jA 93 1.99e+01 a.22.1.3 79813 1yozA 116 2.04e+01 1vlbA 907 2.07e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1x74A 360 2.23e+01 2esnA 310 2.26e+01 1qwyA 291 2.35e+01 b.84.3.2 96509 1v4aA 440 2.36e+01 a.24.16.4,d.218.1.9 108350,108351 1pq1A 196 2.40e+01 f.1.4.1 94986 1b8aA 438 2.42e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1xo0A 324 2.44e+01 1qd9A 124 2.50e+01 1qu9A d.79.1.1 39758 1fg7A 356 2.53e+01 1gewA c.67.1.1 59819 1d6gA 47 2.60e+01 1d6gA g.33.1.1 44976 1c52 131 2.63e+01 1c52 a.3.1.1 15810 1rh9A 373 2.70e+01 2g6tA 306 2.72e+01 1dbwA 126 2.80e+01 1dbwA c.23.1.1 31095 1s6lA 212 2.81e+01 2fqmA 75 2.85e+01 1nu7D 282 2.87e+01 a.8.6.1,a.8.6.1 92191,92192 1j8mF 297 2.95e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1ohfA 644 3.07e+01 b.121.4.8 93014 1fi2A 201 3.08e+01 1fi2A b.82.1.2 59845 1iqcA 308 3.17e+01 a.3.1.5,a.3.1.5 66266,66267 1qtnB 95 3.24e+01 1pauB 1gwuA 309 3.27e+01 a.93.1.1 83351 1w07A 659 3.30e+01 1b06A 210 3.30e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1fpoA 171 3.31e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1h2sA 225 3.38e+01 f.13.1.1 76578 1zxkA 98 3.41e+01 1ut7A 171 3.42e+01 b.143.1.1 99906 2et1A 201 3.43e+01 1n1fA 159 3.43e+01 a.26.1.3 79803 1tqyB 415 3.45e+01 c.95.1.1,c.95.1.1 107247,107248 1oyjA 231 3.47e+01 a.45.1.1,c.47.1.5 87597,87598 1m48A 133 3.53e+01 a.26.1.2 74443 2fgtA 417 3.54e+01 1jae 471 3.58e+01 1smd b.71.1.1,c.1.8.1 27773,28760 2a9iA 113 3.59e+01 2fpmA 322 3.62e+01 1ewfA 456 3.66e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1ppjF 110 3.67e+01 f.27.1.1 104262 1opjA 293 3.71e+01 d.144.1.7 87230 1cojA 212 3.71e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1xfsA 178 3.79e+01 d.129.3.5 109589 1yy7A 213 3.83e+01 1ogsA 497 3.86e+01 b.71.1.2,c.1.8.3 86997,86998 1acf 125 3.90e+01 3nul d.110.1.1 40882 1sheA 103 3.92e+01 d.274.1.1 105551 1nykA 165 3.93e+01 b.33.1.1 86408 1z6uA 150 3.94e+01 1w1nA 33 4.12e+01 1o5kA 306 4.28e+01 c.1.10.1 92504 2fj6A 82 4.32e+01 1xl7A 612 4.39e+01 2cwyA 94 4.40e+01 2c78A 405 4.44e+01 1sqgA 429 4.49e+01 a.79.1.3,c.66.1.38 105912,105913 1xrsA 516 4.53e+01 1p4cA 380 4.62e+01 c.1.4.1 94100 2f96A 224 4.78e+01 2fkzA 155 4.78e+01 1z0wA 207 4.84e+01 1fzqA 181 4.86e+01 1hurA c.37.1.8 32060 1r0pA 312 4.87e+01 d.144.1.7 96734 2ewcA 126 4.88e+01 1vbiA 344 4.90e+01 1uvqB 198 4.95e+01 b.1.1.2,d.19.1.1 100064,100065 1mp8A 281 4.97e+01 d.144.1.7 91384 2ccmA 191 5.28e+01 1wjgA 137 5.29e+01 1ds1A 324 5.32e+01 1drtA b.82.2.2 28127 1repC 251 5.44e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1s5lX 50 5.45e+01 2g62A 325 5.51e+01 1lwdA 413 5.53e+01 c.77.1.1 78265 1x31D 99 5.70e+01 2c2nA 339 5.75e+01 1g291 372 5.76e+01 1g291 1hr6A 475 5.77e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1tqxA 227 5.81e+01 1wmaA 276 5.95e+01 1ztsA 139 6.01e+01 1ugpA 203 6.11e+01 d.149.1.1 107831 1csh 435 6.15e+01 1csh a.103.1.1 18880 2aplA 157 6.17e+01 2cwlA 302 6.18e+01 2f5tX 233 6.24e+01 1bquA 215 6.24e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1ssqA 267 6.42e+01 b.81.1.6 105993 1mr7A 209 6.43e+01 b.81.1.3 91430 1qh4A 380 6.43e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 2fikA 287 6.52e+01 1eumA 165 6.52e+01 1eumA a.25.1.1 59507 1xioA 261 6.53e+01 2c5rA 67 6.56e+01 1pa2A 306 6.59e+01 1bgp a.93.1.1 18693 1hrkA 359 6.59e+01 1hrkA c.92.1.1 61228 1scfA 273 6.60e+01 1exzA a.26.1.2 16873 1amuA 563 6.70e+01 1amuA e.23.1.1 43351 1eyvA 156 6.70e+01 1eyvA a.79.1.1 18446 2f02A 323 6.71e+01 1vi0A 206 6.74e+01 a.4.1.9,a.121.1.1 100720,100721 1rzhL 281 6.81e+01 f.26.1.1 98164 1m3uA 264 6.81e+01 c.1.12.8 84784 1wqwA 235 6.84e+01 1vpqA 273 6.85e+01 1xs1A 193 6.88e+01 1apyA 162 6.95e+01 1apyA d.153.1.5 42004 1vjeA 166 6.96e+01 d.185.1.2 100807 1sra 151 6.98e+01 1sra a.39.1.3 17190 2fb6A 117 7.04e+01 1tueA 212 7.18e+01 c.37.1.20 107323 1avoA 60 7.19e+01 1avoA a.24.8.1 16619 1zbfA 142 7.20e+01 1b79A 119 7.31e+01 1b79A a.81.1.1 18451 1v37A 177 7.32e+01 1alvA 173 7.35e+01 1alvA a.39.1.8 17370 1uayA 242 7.37e+01 c.2.1.2 88390 1xqsA 280 7.40e+01 1umgA 362 7.45e+01 d.280.1.1 107956 1syyA 346 7.47e+01 a.25.1.2 106126 1u9yA 284 7.52e+01 1k1aA 241 7.53e+01 d.211.1.1 67992 1kf6D 119 7.57e+01 f.21.2.2 72400 2fmcA 82 7.59e+01 1v9nA 360 7.64e+01 1r3sA 367 7.68e+01 c.1.22.1 96963 1d4xG 126 7.73e+01 1d0nA d.109.1.1 59109 1cfzA 162 7.74e+01 1cfzA c.56.1.1 33754 1t92A 116 7.78e+01 1gdeA 389 7.80e+01 c.67.1.1 60456 2b1xA 470 7.85e+01 2a2pA 129 7.86e+01 1dp4A 435 7.89e+01 1dp4A c.93.1.1 35710 2a2rA 210 7.91e+01 2afdA 88 7.95e+01 1vqoD 177 8.00e+01 1tujA 123 8.03e+01 2a2fX 325 8.11e+01 1m93B 245 8.13e+01 1xg2B 153 8.14e+01 1zvnA 99 8.14e+01 1qo7A 394 8.18e+01 1qo7A c.69.1.11 34697 1px5A 349 8.21e+01 a.160.1.2,d.218.1.6 95277,95278 2azeA 155 8.21e+01 1aj8A 371 8.27e+01 1aj8A a.103.1.1 18900 1x8vA 455 8.30e+01 1kl9A 182 8.31e+01 b.40.4.5 72681 1bku 33 8.38e+01 1bku j.6.1.1 46104 1rtu 114 8.38e+01 9rnt d.1.1.4 36139 1m22A 503 8.40e+01 c.117.1.1 78464 1j1vA 94 8.48e+01 a.4.12.2 83981 1ydiA 263 8.58e+01 1siqA 392 8.64e+01 a.29.3.1,e.6.1.1 105585,105586 1lbkA 208 8.68e+01 a.45.1.1,c.47.1.5 73809,73810 1suwA 249 8.69e+01 e.52.1.1 106027 1ux5A 411 8.70e+01 a.207.1.1 100144 2fk8A 318 8.72e+01 1n0qA 93 8.73e+01 k.37.1.1 79754 2btvA 901 8.75e+01 2btvA e.28.1.1 43376 1z0sA 278 8.76e+01 2afaA 425 8.80e+01 1rzhM 307 8.96e+01 f.26.1.1 98165 2dbnA 461 8.98e+01 1x7yA 400 9.00e+01