# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ufaA 520 2.53e-01 a.8.3.3,c.6.2.4 99329,99330 1sz2A 332 4.03e-01 2fiyA 309 4.54e-01 1jpaA 312 6.25e-01 d.144.1.7 67011 1jhgA 101 9.12e-01 1jhgA a.4.12.1 19009 1w1oA 534 2.00e+00 d.58.32.4,d.145.1.1 109071,109072 1jb0I 38 2.01e+00 1jb0I f.23.17.1 62826 1zd3A 555 2.02e+00 1zv1A 65 2.88e+00 2b7aA 293 4.16e+00 1kblA 873 4.42e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1bf5A 545 4.88e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1cojA 212 4.92e+00 1avmA a.2.11.1,d.44.1.1 15737,38734 1hdiA 413 5.00e+00 16pk c.86.1.1 60964 1z2nX 324 5.03e+00 2gdjA 264 5.29e+00 1zboA 210 5.52e+00 1jmtB 28 5.74e+00 1ewfA 456 5.85e+00 1bp1 d.83.1.1,d.83.1.1 40024,40025 1x91A 153 6.40e+00 1rkd 309 6.73e+00 1rkd c.72.1.1 34928 2fpmA 322 6.87e+00 1m2kA 249 7.17e+00 c.31.1.5 84754 1jk8B 190 7.59e+00 1iakB b.1.1.2,d.19.1.1 63147,63148 2c5rA 67 7.64e+00 1qfxA 460 7.76e+00 1qfxA c.60.1.2 33994 2fmcA 82 8.33e+00 1bd8 156 8.36e+00 1bd8 d.211.1.1 19157 1sqgA 429 8.88e+00 a.79.1.3,c.66.1.38 105912,105913 2afwA 329 9.21e+00 2f2gA 221 9.36e+00 1tzvA 142 9.55e+00 a.79.1.1 107526 1jmxA 494 9.61e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2aheA 267 9.97e+00 2gsfA 373 1.23e+01 1yzxA 226 1.25e+01 1whrA 124 1.27e+01 1m93B 245 1.28e+01 1pa7A 130 1.31e+01 a.40.1.1 94410 1kpsB 171 1.34e+01 a.118.12.1 68787 2cygA 312 1.39e+01 1x6iA 91 1.41e+01 1mzbA 136 1.43e+01 a.4.5.42 91497 1xmeA 568 1.47e+01 1p4cA 380 1.49e+01 c.1.4.1 94100 2c4jA 218 1.54e+01 2b1eA 564 1.54e+01 1sszA 34 1.58e+01 j.35.1.1 105999 2fqmA 75 1.61e+01 1tqxA 227 1.62e+01 1d8wA 426 1.62e+01 1de5A c.1.15.2 29394 1zhcA 76 1.64e+01 1ohfA 644 1.65e+01 b.121.4.8 93014 1wjgA 137 1.66e+01 1im5A 180 1.67e+01 c.33.1.3 66211 2fikA 287 1.74e+01 1qd9A 124 1.75e+01 1qu9A d.79.1.1 39758 1vgmA 378 1.82e+01 1m6jA 261 1.88e+01 c.1.1.1 78693 1li5A 461 2.01e+01 a.27.1.1,c.26.1.1 73912,73913 1zq9A 285 2.01e+01 1vls 146 2.03e+01 1vls a.24.2.1 16532 1mun 225 2.04e+01 1mun a.96.1.2 18744 1hfeL 421 2.05e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 2bemA 170 2.05e+01 1yy7A 213 2.06e+01 1z6uA 150 2.07e+01 1i9gA 280 2.08e+01 c.66.1.13 62090 1bh9B 89 2.09e+01 1bh9B a.22.1.3 16485 1xioA 261 2.09e+01 1zkeA 83 2.10e+01 2ctoA 93 2.16e+01 1sheA 103 2.25e+01 d.274.1.1 105551 2ccmA 191 2.28e+01 1w07A 659 2.32e+01 1tkeA 224 2.35e+01 2br9A 234 2.36e+01 1ab8A 220 2.38e+01 1azsA d.58.29.1 39414 1z2uA 150 2.38e+01 2ddfA 257 2.41e+01 1jhdA 396 2.47e+01 b.122.1.3,c.26.1.5 66712,66713 1kf6D 119 2.61e+01 f.21.2.2 72400 1thg 544 2.69e+01 1thg c.69.1.17 34763 1zejA 293 2.70e+01 2esnA 310 2.74e+01 1x74A 360 2.83e+01 2a9iA 113 2.97e+01 2czrA 226 2.99e+01 2iu5A 195 3.03e+01 2furA 209 3.05e+01 1ssqA 267 3.09e+01 b.81.1.6 105993 1qtnB 95 3.13e+01 1pauB 1pn0A 665 3.17e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1fzqA 181 3.28e+01 1hurA c.37.1.8 32060 1yozA 116 3.28e+01 1zbfA 142 3.34e+01 1h2sA 225 3.38e+01 f.13.1.1 76578 1j8mF 297 3.39e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2givA 295 3.49e+01 1im8A 244 3.54e+01 c.66.1.14 66212 2fgtA 417 3.66e+01 2a3qA 170 3.69e+01 1h99A 224 3.71e+01 a.142.1.1,a.142.1.1 60814,60815 1fpoA 171 3.72e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1d5rA 324 3.99e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1k6iA 352 3.99e+01 c.2.1.2 68223 1qu9A 128 4.01e+01 1qu9A d.79.1.1 39755 1vpqA 273 4.08e+01 1tzpA 255 4.12e+01 d.65.1.3 107520 1x4tA 92 4.13e+01 1alvA 173 4.21e+01 1alvA a.39.1.8 17370 1t92A 116 4.29e+01 1h4vB 421 4.31e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1d4xG 126 4.40e+01 1d0nA d.109.1.1 59109 2fb6A 117 4.42e+01 4hb1 108 4.50e+01 4hb1 k.8.1.1 46414 1zy9A 564 4.55e+01 1wmmA 145 4.56e+01 1qh4A 380 4.58e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1m98A 317 4.59e+01 a.175.1.1,d.17.4.6 78866,78867 2bt2A 161 4.60e+01 1apyA 162 4.67e+01 1apyA d.153.1.5 42004 1tn6A 382 4.70e+01 1j30A 144 4.70e+01 a.25.1.1 90806 2gwgA 350 4.81e+01 1guxA 218 4.84e+01 1guxA a.74.1.3 18388 2ezh 75 4.85e+01 2ezh a.4.1.2 16029 2fkzA 155 4.88e+01 2ewcA 126 5.01e+01 1gjjA 168 5.01e+01 a.140.1.1,a.140.1.1 83291,83292 1t8kA 77 5.04e+01 a.28.1.1 106666 1x7yA 400 5.06e+01 1qwoA 442 5.06e+01 c.60.1.2 104620 1z83A 196 5.07e+01 1jakA 512 5.14e+01 c.1.8.6,d.92.2.1 66472,66473 1rzsA 61 5.19e+01 a.35.1.2 105139 1x8vA 455 5.25e+01 1eemA 241 5.39e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1rtwA 220 5.42e+01 a.132.1.3 97823 2a5yB 549 5.49e+01 1lghA 56 5.50e+01 1lghA f.3.1.1 43733 1qahA 136 5.60e+01 d.79.1.1 96338 1o9wA 177 5.64e+01 b.2.3.5 86713 1tqyB 415 5.80e+01 c.95.1.1,c.95.1.1 107247,107248 1no1A 126 5.83e+01 a.179.1.1 85913 2gtqA 867 5.88e+01 1n1jA 93 5.91e+01 a.22.1.3 79813 2cglA 489 5.96e+01 2g62A 325 5.96e+01 1ux5A 411 5.99e+01 a.207.1.1 100144 2a7mA 250 6.01e+01 1p9aG 290 6.01e+01 c.10.2.7 87990 2f8mA 244 6.01e+01 1xfjA 261 6.04e+01 d.194.1.2 109585 2fu4A 83 6.09e+01 1sf8A 126 6.10e+01 d.271.1.1 105472 1h3nA 878 6.15e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1mtyD 512 6.19e+01 1mhyD a.25.1.2 16742 1lvaA 258 6.21e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2f96A 224 6.22e+01 1w85A 368 6.24e+01 2cmxA 118 6.37e+01 2es9A 115 6.42e+01 2cwyA 94 6.51e+01 1n8vA 112 6.59e+01 a.118.21.1 85457 1jae 471 6.66e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1r6wA 322 6.71e+01 c.1.11.2,d.54.1.1 97165,97166 2fupA 168 6.78e+01 1sr2A 116 6.80e+01 2ashA 381 6.86e+01 1t6uA 117 6.91e+01 a.24.22.1 106584 2bc4B 211 7.01e+01 1ylxA 103 7.10e+01 1iujA 106 7.14e+01 d.58.4.5 90701 1gwuA 309 7.14e+01 a.93.1.1 83351 1y2kA 349 7.18e+01 2g19A 244 7.19e+01 2a2mA 258 7.21e+01 1uvqB 198 7.21e+01 b.1.1.2,d.19.1.1 100064,100065 1avoA 60 7.23e+01 1avoA a.24.8.1 16619 1fehA 574 7.26e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 2f2mA 113 7.29e+01 1m3uA 264 7.38e+01 c.1.12.8 84784 1knvA 293 7.42e+01 c.52.1.7 68707 1j6rA 214 7.48e+01 d.173.1.2 71598 1jy2N 53 7.51e+01 h.1.8.1 67440 1v2dA 381 7.55e+01 c.67.1.1 108281 2bfdA 400 7.58e+01 4ubpC 570 7.61e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1n1fA 159 7.64e+01 a.26.1.3 79803 1ka9H 200 7.73e+01 c.23.16.1 77308 2f02A 323 7.80e+01 1ytaA 180 7.80e+01 1wmaA 276 7.91e+01 1s5lX 50 8.02e+01 1geeA 261 8.10e+01 c.2.1.2 90509 1bjt 793 8.11e+01 1bjt e.11.1.1 43249 1hlvA 131 8.11e+01 a.4.1.7,a.4.1.7 65854,65855 1x6oA 174 8.16e+01 b.34.5.2,b.40.4.5 109493,109494 1p2fA 220 8.16e+01 a.4.6.1,c.23.1.1 87720,87721 1j1vA 94 8.20e+01 a.4.12.2 83981 1ln4A 104 8.28e+01 d.68.4.1 74043 1irzA 64 8.37e+01 a.4.1.11 76772 1ppjF 110 8.43e+01 f.27.1.1 104262 1amf 233 8.55e+01 1wod c.94.1.1 35833 2azeA 155 8.55e+01 1z5zA 271 8.66e+01 1bupA 386 8.72e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2fywA 267 8.77e+01 1m48A 133 8.84e+01 a.26.1.2 74443 1i2aA 219 8.91e+01 e.24.1.1 90660 1vi0A 206 8.96e+01 a.4.1.9,a.121.1.1 100720,100721