# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bc4A 211 2.05e-01 1jpaA 312 2.15e-01 d.144.1.7 67011 1m6jA 261 3.29e-01 c.1.1.1 78693 1jhgA 101 1.68e+00 1jhgA a.4.12.1 19009 1yduA 170 2.40e+00 2cvdA 198 3.07e+00 1bf5A 545 3.33e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2ar0A 541 3.51e+00 1m0dA 138 3.51e+00 c.52.1.17 74354 7aatA 401 3.72e+00 1ajsA c.67.1.1 34250 1guxA 218 5.06e+00 1guxA a.74.1.3 18388 2bkaA 242 5.15e+00 1wazA 46 5.40e+00 1ngkA 128 5.59e+00 a.1.1.1 85673 1dzlA 505 6.74e+00 1dzlA b.121.6.1 23586 1iyhA 198 6.77e+00 a.45.1.1,c.47.1.5 83790,83791 2fmcA 82 7.26e+00 1jb0I 38 7.41e+00 1jb0I f.23.17.1 62826 2aheA 267 7.87e+00 1gnkA 112 8.22e+00 2pii d.58.5.1 39073 1x6iA 91 8.83e+00 1llmC 88 9.87e+00 g.37.1.1,g.37.1.1 91059,91060 1snnA 227 9.90e+00 d.115.1.2 105821 1ewsA 32 1.02e+01 1ewsA g.9.1.1 59534 1k8kF 168 1.03e+01 d.198.2.1 68312 1sszA 34 1.04e+01 j.35.1.1 105999 1nrgA 261 1.12e+01 b.45.1.1 80694 2fl4A 149 1.30e+01 1xeaA 323 1.42e+01 c.2.1.3,d.81.1.5 109572,109573 1otgA 125 1.45e+01 1otgA d.80.1.2 39831 2gw8A 114 1.47e+01 1clvI 32 1.49e+01 1qfdA g.3.2.1 44075 1hynP 379 1.68e+01 1hynP d.112.1.2 61408 1pzqA 60 1.70e+01 a.34.3.1 95466 1jmtB 28 1.71e+01 2furA 209 1.71e+01 1vbiA 344 1.74e+01 2gpzA 111 1.83e+01 1apyA 162 1.83e+01 1apyA d.153.1.5 42004 1ecrA 309 1.88e+01 1ecrA e.2.1.1 42678 1m2kA 249 2.03e+01 c.31.1.5 84754 1bquA 215 2.22e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 2a6cA 83 2.23e+01 2gsfA 373 2.24e+01 1bh9B 89 2.36e+01 1bh9B a.22.1.3 16485 1tn6A 382 2.39e+01 2h88B 252 2.63e+01 2b4nA 42 2.64e+01 1nkzA 53 2.67e+01 f.3.1.1 80611 2f2eA 146 2.71e+01 2c0wA 50 2.75e+01 2fbwB 252 2.81e+01 1d6gA 47 2.83e+01 1d6gA g.33.1.1 44976 1dugA 234 2.92e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1f5vA 240 3.05e+01 1bkjA d.90.1.1 40255 1w9zA 283 3.13e+01 1vqsA 116 3.13e+01 1itbB 315 3.15e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2auwA 170 3.28e+01 1w7lA 422 3.30e+01 c.67.1.1 109226 1u6pA 56 3.34e+01 1ugpA 203 3.40e+01 d.149.1.1 107831 2cy3 118 3.47e+01 3cyr a.138.1.1 19649 2b7aA 293 3.61e+01 1v9yA 167 3.94e+01 d.110.3.2 108454 1ajsA 412 4.09e+01 1ajsA c.67.1.1 34276 1b35A 260 4.10e+01 1b35A b.121.4.1 23333 2g62A 325 4.11e+01 1o8rA 94 4.12e+01 d.234.1.1 86677 1ogqA 313 4.20e+01 c.10.2.8 86996 1bh0 29 4.29e+01 j.6.1.1 46102 1o3uA 135 4.38e+01 a.24.16.3 86615 1ni4A 365 4.51e+01 c.36.1.11 85728 1x6vA 630 4.54e+01 1vaxA 287 4.64e+01 1voqa 90 4.73e+01 2a9iA 113 4.80e+01 1ufyA 122 4.87e+01 d.79.1.2 88489 1dfwA 25 5.00e+01 j.35.1.1 46255 1pgtA 210 5.10e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 2cs3A 93 5.11e+01 1qtnB 95 5.12e+01 1pauB 1qgtA 149 5.24e+01 1qgtA a.62.1.1 18135 1p0yA 444 5.31e+01 a.166.1.1,b.85.7.3 87654,87655 1c0pA 363 5.31e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2fi1A 190 5.47e+01 1yz7A 188 5.47e+01 2gptA 523 5.55e+01 1qsdA 106 5.57e+01 1qsdA a.7.5.1 16335 2a72A 146 5.59e+01 1lghA 56 5.67e+01 1lghA f.3.1.1 43733 1q4uA 151 5.74e+01 d.38.1.5 95828 1gnwA 211 5.76e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 2a2rA 210 5.78e+01 2fsqA 243 5.90e+01 1kf6D 119 6.09e+01 f.21.2.2 72400 1gvnB 287 6.16e+01 c.37.1.21 76354 2h0uA 217 6.27e+01 1k0mA 241 6.33e+01 a.45.1.1,c.47.1.5 67949,67950 1ijyA 130 6.37e+01 1ijxA a.141.1.1 62517 1owcA 427 6.40e+01 a.103.1.1 104039 1kq6A 141 6.48e+01 d.189.1.1 91020 1zboA 210 6.51e+01 2fy6A 143 6.54e+01 2bapC 56 6.57e+01 1gqeA 365 6.65e+01 e.38.1.1 70351 1kqhA 38 6.93e+01 g.3.6.2 68810 1iieA 75 7.22e+01 1iieA a.109.1.1 19039 2fu4A 83 7.28e+01 2g19A 244 7.33e+01 1ttzA 87 7.37e+01 c.47.1.1 107309 1oeyJ 107 7.51e+01 d.15.2.2 92804 1q9uA 130 7.58e+01 d.129.7.1 96314 1v54M 46 7.58e+01 f.23.7.1 100334 2if1 126 7.59e+01 2if1 d.64.1.1 39547 3fapB 94 7.90e+01 1nsgB a.24.7.1 16612 2fb1A 226 7.92e+01 1tuaA 191 7.97e+01 d.51.1.1,d.51.1.1 107321,107322 1im5A 180 8.00e+01 c.33.1.3 66211 2db0A 253 8.12e+01 2c5qA 240 8.14e+01 1lv3A 68 8.22e+01 g.39.1.9 78231 2arcA 164 8.30e+01 2arcA b.82.4.1 28148 1w53A 84 8.45e+01 a.186.1.2 109175 1thg 544 8.49e+01 1thg c.69.1.17 34763 1n6zA 105 8.61e+01 d.263.1.1 85369 1v63A 101 8.65e+01 a.21.1.1 108391 1lbkA 208 8.67e+01 a.45.1.1,c.47.1.5 73809,73810 1vdiA 52 8.70e+01 1df7A 159 8.75e+01 3dfr c.71.1.1 34885 1hdiA 413 8.90e+01 16pk c.86.1.1 60964