# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 4.72e-01 d.144.1.7 67011 1iuhA 198 1.03e+00 d.61.1.2 83711 1m6jA 261 1.08e+00 c.1.1.1 78693 1m2kA 249 1.62e+00 c.31.1.5 84754 1h6zA 913 3.33e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2gsfA 373 4.37e+00 1d1qA 161 4.58e+00 1dg9A c.44.1.1 32642 1ewqA 765 5.10e+00 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1jsxA 207 6.03e+00 c.66.1.20 71846 1w36C 1122 7.15e+00 1sr2A 116 7.62e+00 1w1oA 534 7.76e+00 d.58.32.4,d.145.1.1 109071,109072 1kblA 873 8.01e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1ooeA 236 8.30e+00 c.2.1.2 87196 1pzqA 60 1.05e+01 a.34.3.1 95466 1q0gA 117 1.07e+01 a.24.22.1 104428 2fqmA 75 1.24e+01 1s7jA 262 1.29e+01 d.21.1.2 98647 2fy6A 143 1.30e+01 2furA 209 1.38e+01 1n2fA 142 1.40e+01 d.227.1.1 79853 1yzxA 226 1.41e+01 2g62A 325 1.41e+01 1t6uA 117 1.43e+01 a.24.22.1 106584 1ogqA 313 1.76e+01 c.10.2.8 86996 1i9gA 280 1.88e+01 c.66.1.13 62090 1dik 874 1.89e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 2esnA 310 1.90e+01 1tuaA 191 1.93e+01 d.51.1.1,d.51.1.1 107321,107322 2db0A 253 2.06e+01 1vj5A 555 2.08e+01 c.108.1.2,c.69.1.11 100799,100800 2fmcA 82 2.14e+01 1ufaA 520 2.15e+01 a.8.3.3,c.6.2.4 99329,99330 1z0wA 207 2.20e+01 1zd3A 555 2.30e+01 1bkcE 256 2.48e+01 1bkcA d.92.1.10 40333 1lwdA 413 2.51e+01 c.77.1.1 78265 2fywA 267 2.60e+01 1gqeA 365 2.71e+01 e.38.1.1 70351 1q5zA 177 2.74e+01 a.196.1.1 95954 1j1vA 94 2.74e+01 a.4.12.2 83981 1zccA 248 2.84e+01 1ewfA 456 2.92e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1z2nX 324 3.00e+01 2aheA 267 3.05e+01 1knvA 293 3.06e+01 c.52.1.7 68707 1k8kF 168 3.09e+01 d.198.2.1 68312 1t6aA 126 3.11e+01 d.129.8.1 106555 3fapB 94 3.15e+01 1nsgB a.24.7.1 16612 2bv5A 282 3.32e+01 1nox 205 3.33e+01 1nox d.90.1.1 40242 2ddfA 257 3.39e+01 2an3A 289 3.43e+01 1whrA 124 3.44e+01 1jhnA 424 3.52e+01 b.104.1.1,b.29.1.12 66722,70060 1w2iA 91 3.54e+01 d.58.10.1 109127 1h2vC 771 3.55e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1hnnA 282 3.61e+01 c.66.1.15 65895 1n6zA 105 3.61e+01 d.263.1.1 85369 2ar0A 541 3.64e+01 1sczA 233 3.68e+01 c.43.1.1 98802 1o4vA 183 3.70e+01 c.23.8.1 86628 1thg 544 3.75e+01 1thg c.69.1.17 34763 2a6cA 83 3.75e+01 2fu4A 83 3.76e+01 1jmxA 494 3.86e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1hfeL 421 4.00e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1bg2 325 4.09e+01 1bg2 c.37.1.9 32189 1df7A 159 4.09e+01 3dfr c.71.1.1 34885 1esiA 262 4.24e+01 1skf e.3.1.1 42682 1y7wA 291 4.27e+01 2b7aA 293 4.33e+01 2acvA 463 4.47e+01 1jsmA 325 4.49e+01 b.19.1.2 63264 1h4vB 421 4.54e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1c0pA 363 4.61e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1z6oA 212 4.75e+01 1x6vA 630 4.90e+01 1a0rP 245 4.95e+01 1b9yC c.47.1.6 33054 2afwA 329 4.99e+01 1d4xG 126 5.04e+01 1d0nA d.109.1.1 59109 1xeaA 323 5.07e+01 c.2.1.3,d.81.1.5 109572,109573 7taa 478 5.12e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1yozA 116 5.13e+01 2fpmA 322 5.14e+01 1clvI 32 5.16e+01 1qfdA g.3.2.1 44075 1jmtB 28 5.26e+01 1vqsA 116 5.29e+01 1qgtA 149 5.30e+01 1qgtA a.62.1.1 18135 1x4tA 92 5.37e+01 2bijA 305 5.47e+01 1ka9H 200 5.51e+01 c.23.16.1 77308 1d8dA 377 5.52e+01 1ft1A a.118.6.1 19185 1hu4A 288 5.58e+01 1hu4A 1xgsA 295 5.63e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 2fupA 168 5.67e+01 1zxcA 263 5.68e+01 1adjA 421 5.78e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 1bkcI 256 5.93e+01 1bkcA d.92.1.10 40334 1br1B 150 5.96e+01 1wdcC a.39.1.5 17309 1oyjA 231 6.01e+01 a.45.1.1,c.47.1.5 87597,87598 1guxA 218 6.12e+01 1guxA a.74.1.3 18388 1yt3A 375 6.48e+01 1qkrA 188 6.51e+01 1qkrA a.24.9.1 16628 1n5dA 288 6.56e+01 c.2.1.2 80030 2cdqA 510 6.59e+01 2gm6A 208 6.60e+01 1m7vA 363 6.61e+01 d.174.1.1 78748 1q4uA 151 6.88e+01 d.38.1.5 95828 1v9vA 114 6.99e+01 1yz7A 188 7.08e+01 2b7yA 182 7.16e+01 2gdjA 264 7.18e+01 1amuA 563 7.20e+01 1amuA e.23.1.1 43351 1ld8A 382 7.32e+01 a.118.6.1 73838 1ihp 438 7.33e+01 1ihp c.60.1.2 33993 1koqA 253 7.34e+01 2cba b.74.1.1 27964 1u1jA 765 7.36e+01 c.1.22.2,c.1.22.2 107590,107591 1pd21 199 7.38e+01 1pd21 1ngnA 155 7.43e+01 a.96.1.2 85697 1es5A 262 7.51e+01 1skf e.3.1.1 42679 2aaa 484 7.55e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1dp4A 435 7.59e+01 1dp4A c.93.1.1 35710 2aw5A 541 7.61e+01 1qrvA 73 7.61e+01 1cktA a.21.1.1 16425 1qtnB 95 7.63e+01 1pauB 1m3uA 264 7.64e+01 c.1.12.8 84784 1bquA 215 7.78e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1vf1A 229 7.91e+01 1nm1G 125 7.99e+01 d.109.1.1 80653 1pmmA 466 8.05e+01 c.67.1.6 94901 1a6bB 40 8.11e+01 1a6bB g.40.1.1 45172 1zboA 210 8.41e+01 1kopA 223 8.46e+01 2cba b.74.1.1 27966 1bed 181 8.54e+01 1fvkA c.47.1.13 90330 1mjhA 162 8.54e+01 1mjhA c.26.2.4 31639 1sphA 88 8.68e+01 1ptf d.94.1.1 40544 1kq6A 141 8.74e+01 d.189.1.1 91020 1w2fA 276 8.99e+01 d.143.1.3 109125