# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 4.20e-01 1q18A 332 4.82e-01 c.55.1.7,c.55.1.7 104470,104471 2fiyA 309 1.02e+00 1ihp 438 1.09e+00 1ihp c.60.1.2 33993 6gsvA 217 1.19e+00 1b8xA a.45.1.1,c.47.1.5 17633,32925 1tbmA 326 1.70e+00 a.211.1.2 106744 1jhgA 101 2.25e+00 1jhgA a.4.12.1 19009 1jpaA 312 2.40e+00 d.144.1.7 67011 2c4jA 218 2.51e+00 1xw5A 217 3.16e+00 2gsvA 80 4.28e+00 1b4pA 217 4.60e+00 a.45.1.1,c.47.1.5 83158,83159 1ad3A 452 7.07e+00 1ad3A c.82.1.1 35335 1zv1A 65 7.28e+00 1es5A 262 7.59e+00 1skf e.3.1.1 42679 1esiA 262 7.83e+00 1skf e.3.1.1 42682 1zejA 293 8.52e+00 1mzbA 136 8.57e+00 a.4.5.42 91497 1y3nA 490 8.68e+00 1bd8 156 8.83e+00 1bd8 d.211.1.1 19157 1kpsB 171 1.01e+01 a.118.12.1 68787 1qwoA 442 1.08e+01 c.60.1.2 104620 1zd3A 555 1.10e+01 1vj5A 555 1.15e+01 c.108.1.2,c.69.1.11 100799,100800 1eemA 241 1.22e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1zboA 210 1.25e+01 2iu5A 195 1.34e+01 2fmcA 82 1.43e+01 1jb0I 38 1.46e+01 1jb0I f.23.17.1 62826 2ctoA 93 1.51e+01 1jk8B 190 1.55e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1x1fA 149 1.59e+01 1m3uA 264 1.72e+01 c.1.12.8 84784 1qfxA 460 1.74e+01 1qfxA c.60.1.2 33994 2esnA 310 1.77e+01 1w1oA 534 1.88e+01 d.58.32.4,d.145.1.1 109071,109072 2gsfA 373 2.03e+01 2aheA 267 2.03e+01 2a9iA 113 2.08e+01 1r4wA 226 2.22e+01 c.47.1.13 97050 1ufaA 520 2.23e+01 a.8.3.3,c.6.2.4 99329,99330 1kqfC 217 2.39e+01 f.21.1.1 72874 2b7aA 293 2.42e+01 1ohfA 644 2.48e+01 b.121.4.8 93014 1x74A 360 2.50e+01 1z6uA 150 2.58e+01 1sszA 34 2.78e+01 j.35.1.1 105999 1fg7A 356 2.86e+01 1gewA c.67.1.1 59819 2fu4A 83 2.87e+01 1h6zA 913 3.16e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1z2uA 150 3.20e+01 1nd7A 374 3.24e+01 d.148.1.1 91817 1tzvA 142 3.29e+01 a.79.1.1 107526 1m6jA 261 3.35e+01 c.1.1.1 78693 1y5iC 225 3.37e+01 4crxA 322 3.38e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1n1jA 93 3.38e+01 a.22.1.3 79813 1gewA 356 3.39e+01 1gewA c.67.1.1 60470 1g5aA 628 3.59e+01 b.71.1.1,c.1.8.1 65152,65153 2fkzA 155 3.69e+01 1kblA 873 3.69e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2g6tA 306 3.77e+01 1xo0A 324 3.80e+01 1rkd 309 3.83e+01 1rkd c.72.1.1 34928 1cojA 212 3.91e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1x23A 155 3.91e+01 1y1xA 191 3.96e+01 2f2gA 221 3.98e+01 1ewfA 456 4.11e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1q4mA 221 4.11e+01 a.132.1.3 95805 1okcA 297 4.16e+01 f.42.1.1 93248 1sq5A 308 4.18e+01 c.37.1.6 105882 1x6vA 630 4.43e+01 1h2vC 771 4.53e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1jmtB 28 4.56e+01 1l9lA 74 4.65e+01 a.64.1.1 77827 1v1rA 400 4.71e+01 c.36.1.11 108272 1z2nX 324 4.75e+01 1ytaA 180 4.77e+01 2furA 209 4.77e+01 1iqcA 308 4.80e+01 a.3.1.5,a.3.1.5 66266,66267 2fqmA 75 4.97e+01 1f7uA 607 5.00e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1w36C 1122 5.08e+01 1yy7A 213 5.19e+01 1or7A 194 5.22e+01 a.4.13.2,a.177.1.1 87332,87333 1i9gA 280 5.24e+01 c.66.1.13 62090 1pgjA 478 5.27e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1f44A 324 5.37e+01 a.60.9.1,d.163.1.1 64982,64983 2g7gA 213 5.45e+01 1whrA 124 5.48e+01 1w7lA 422 5.55e+01 c.67.1.1 109226 1m2kA 249 5.63e+01 c.31.1.5 84754 1zrzA 364 5.75e+01 1zkeA 83 5.77e+01 1x7yA 400 5.81e+01 2gdjA 264 5.89e+01 2afwA 329 5.90e+01 1zxcA 263 5.98e+01 1zvzA 279 6.09e+01 1xmeA 568 6.10e+01 1hdiA 413 6.23e+01 16pk c.86.1.1 60964 2ddfA 257 6.29e+01 1d8wA 426 6.33e+01 1de5A c.1.15.2 29394 1bkcE 256 6.44e+01 1bkcA d.92.1.10 40333 1fpoA 171 6.49e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1ycsB 239 6.56e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1vp2A 208 6.57e+01 1x91A 153 6.66e+01 1vls 146 6.67e+01 1vls a.24.2.1 16532 1a1iA 90 6.67e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1bkcI 256 6.72e+01 1bkcA d.92.1.10 40334 7atjA 308 6.86e+01 1bgp a.93.1.1 18673 1h32A 261 6.96e+01 a.3.1.8,a.3.1.8 76618,76619 1sqgA 429 6.97e+01 a.79.1.3,c.66.1.38 105912,105913 1fhuA 320 6.99e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1sheA 103 6.99e+01 d.274.1.1 105551 1g2fC 90 7.04e+01 k.12.1.1 60222 1hp5A 512 7.04e+01 1hp4A c.1.8.6,d.92.2.1 61113,61114 1im8A 244 7.09e+01 c.66.1.14 66212 1jakA 512 7.11e+01 c.1.8.6,d.92.2.1 66472,66473 1ewqA 765 7.14e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1xfsA 178 7.30e+01 d.129.3.5 109589 2fhfA 1083 7.33e+01 1xioA 261 7.37e+01 1xrsA 516 7.37e+01 2fpmA 322 7.52e+01 1yzxA 226 7.59e+01 4ubpC 570 7.61e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1sra 151 7.73e+01 1sra a.39.1.3 17190 2fywA 267 7.85e+01 1ujcA 161 7.91e+01 1gwuA 309 7.95e+01 a.93.1.1 83351 1br1B 150 7.97e+01 1wdcC a.39.1.5 17309 1x6iA 91 7.99e+01 1ut7A 171 8.02e+01 b.143.1.1 99906 2g62A 325 8.11e+01 1v4aA 440 8.18e+01 a.24.16.4,d.218.1.9 108350,108351 1z98A 281 8.26e+01 2cwlA 302 8.28e+01 1ituA 369 8.32e+01 c.1.9.7 71423 1ssqA 267 8.33e+01 b.81.1.6 105993 1ab8A 220 8.60e+01 1azsA d.58.29.1 39414 1tkeA 224 8.61e+01 1azsB 212 8.63e+01 1azsA d.58.29.1 39423 1dp4A 435 8.71e+01 1dp4A c.93.1.1 35710 1bf5A 545 8.78e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1wjgA 137 8.80e+01 1fi2A 201 8.91e+01 1fi2A b.82.1.2 59845 1zaaC 87 8.95e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015