# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6jA 261 3.18e-01 c.1.1.1 78693 1jpaA 312 3.71e-01 d.144.1.7 67011 2bc4A 211 9.20e-01 2cvdA 198 2.14e+00 2ar0A 541 3.37e+00 1iyhA 198 4.06e+00 a.45.1.1,c.47.1.5 83790,83791 1pvyA 227 5.48e+00 d.115.1.2 95195 1ewsA 32 5.96e+00 1ewsA g.9.1.1 59534 1guxA 218 6.62e+00 1guxA a.74.1.3 18388 1pd21 199 7.46e+00 1pd21 7aatA 401 8.61e+00 1ajsA c.67.1.1 34250 1snnA 227 9.18e+00 d.115.1.2 105821 1bquA 215 1.04e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1yyvA 131 1.06e+01 1pzqA 60 1.17e+01 a.34.3.1 95466 1llmC 88 1.19e+01 g.37.1.1,g.37.1.1 91059,91060 1ngkA 128 1.24e+01 a.1.1.1 85673 1clvI 32 1.38e+01 1qfdA g.3.2.1 44075 1yduA 170 1.39e+01 1w2qA 127 1.48e+01 1vbiA 344 1.81e+01 1k8kF 168 1.83e+01 d.198.2.1 68312 1a6bB 40 1.83e+01 1a6bB g.40.1.1 45172 2furA 209 1.90e+01 1a1iA 90 1.97e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2gsfA 373 2.01e+01 1nrgA 261 2.09e+01 b.45.1.1 80694 1jmtB 28 2.09e+01 1c0pA 363 2.12e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1v1rA 400 2.13e+01 c.36.1.11 108272 1zaaC 87 2.14e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1xeaA 323 2.17e+01 c.2.1.3,d.81.1.5 109572,109573 1bh9B 89 2.24e+01 1bh9B a.22.1.3 16485 2fmcA 82 2.28e+01 1vdiA 52 2.36e+01 1aayA 90 2.43e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1iieA 75 2.57e+01 1iieA a.109.1.1 19039 1x6iA 91 2.60e+01 1u6pA 56 2.64e+01 1iuhA 198 2.71e+01 d.61.1.2 83711 1ecrA 309 2.77e+01 1ecrA e.2.1.1 42678 2gptA 523 2.86e+01 1wkvA 389 3.03e+01 1dugA 234 3.03e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1apyA 162 3.05e+01 1apyA d.153.1.5 42004 1f5vA 240 3.08e+01 1bkjA d.90.1.1 40255 2bkaA 242 3.13e+01 1ewqA 765 3.14e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2fiyA 309 3.25e+01 1itbB 315 3.31e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2auwA 170 3.42e+01 2h0uA 217 3.44e+01 1hdmA 201 3.46e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1ogqA 313 3.54e+01 c.10.2.8 86996 1nkzA 53 3.64e+01 f.3.1.1 80611 1qtnB 95 3.65e+01 1pauB 1d8dA 377 3.80e+01 1ft1A a.118.6.1 19185 1gnkA 112 3.87e+01 2pii d.58.5.1 39073 1bo4A 168 3.96e+01 1bo4A d.108.1.1 40798 2a6cA 83 3.97e+01 1n3gA 113 4.02e+01 d.204.1.1 79962 2arzA 247 4.18e+01 2g62A 325 4.26e+01 1y75B 118 4.28e+01 1m2kA 249 4.38e+01 c.31.1.5 84754 1hynP 379 4.41e+01 1hynP d.112.1.2 61408 1vaxA 287 4.43e+01 2aheA 267 4.52e+01 1w9zA 283 4.52e+01 1pgtA 210 4.61e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1ijgA 309 4.74e+01 1fouA e.27.1.1 62493 1gnwA 211 4.79e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1cq3A 233 4.82e+01 1cq3A b.27.1.1 23923 1dar 691 4.86e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 2gpzA 111 4.88e+01 1d6gA 47 4.90e+01 1d6gA g.33.1.1 44976 2gw8A 114 5.01e+01 1p0yA 444 5.31e+01 a.166.1.1,b.85.7.3 87654,87655 1rr7A 129 5.36e+01 a.4.1.14 105075 1jbbA 153 5.39e+01 1u9aA d.20.1.1 62842 2a2rA 210 5.43e+01 1c4kA 730 5.53e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1w36C 1122 5.54e+01 1qgtA 149 5.63e+01 1qgtA a.62.1.1 18135 1h6zA 913 5.76e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1qsdA 106 5.82e+01 1qsdA a.7.5.1 16335 1pvc2 271 5.89e+01 1aym2 2g19A 244 6.03e+01 1q4uA 151 6.06e+01 d.38.1.5 95828 1w53A 84 6.10e+01 a.186.1.2 109175 1amuA 563 6.37e+01 1amuA e.23.1.1 43351 2b7yA 182 6.47e+01 2pvaA 345 6.52e+01 3pvaA d.153.1.3 41850 1ooeA 236 6.86e+01 c.2.1.2 87196 1thg 544 6.86e+01 1thg c.69.1.17 34763 1ka9H 200 7.04e+01 c.23.16.1 77308 2bv5A 282 7.22e+01 1z7uA 112 7.41e+01 1ad3A 452 7.55e+01 1ad3A c.82.1.1 35335 1zxcA 263 7.73e+01 1es5A 262 7.74e+01 1skf e.3.1.1 42679 1w1oA 534 7.78e+01 d.58.32.4,d.145.1.1 109071,109072 1otgA 125 7.80e+01 1otgA d.80.1.2 39831 1esiA 262 7.87e+01 1skf e.3.1.1 42682 1n71A 180 8.06e+01 d.108.1.1 85370 1lbkA 208 8.06e+01 a.45.1.1,c.47.1.5 73809,73810 1jmuA 41 8.13e+01 e.35.1.1 66891 1o8rA 94 8.22e+01 d.234.1.1 86677 1nc8 29 8.24e+01 g.40.1.1 45170 1x6vA 630 8.28e+01 2cbiA 594 8.28e+01 1vgmA 378 8.28e+01 1ajsA 412 8.56e+01 1ajsA c.67.1.1 34276 351c 82 8.56e+01 451c a.3.1.1 15905 2bapC 56 8.64e+01 451c 82 8.68e+01 451c a.3.1.1 15904 1jatA 155 8.72e+01 1u9aA d.20.1.1 62818 1bd8 156 8.74e+01 1bd8 d.211.1.1 19157 2gefA 217 8.77e+01 1tn6A 382 8.90e+01