# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g0uG 252 2.90e-02 d.153.1.4 41952 1rypA 243 3.58e-02 1pmaA d.153.1.4 41932 2ap1A 327 1.22e-01 1wzvA 155 1.08e+00 1yrvA 169 1.64e+00 2ahqA 76 1.98e+00 1fzqA 181 2.08e+00 1hurA c.37.1.8 32060 1xqaA 113 2.11e+00 1zd9A 188 2.36e+00 2b20A 403 2.67e+00 1qhbA 596 2.91e+00 1qhbA a.111.1.2 19055 1xawA 140 3.21e+00 1f1sA 814 4.45e+00 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 1kxoA 184 4.74e+00 b.60.1.1 84475 2a19A 175 4.88e+00 1fseA 74 5.39e+00 1fseA a.4.6.2 60000 1wxcB 134 6.47e+00 1yzgA 179 6.50e+00 3proC 166 7.07e+00 3proC d.52.1.1,d.52.1.1 38812,38813 2fi9A 128 7.82e+00 1hfoA 113 8.39e+00 d.80.1.3 61006 1ahr 146 8.65e+00 1cll a.39.1.5 17287 1o7fA 469 9.02e+00 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1gu7A 364 9.30e+00 b.35.1.2,c.2.1.1 83321,83322 1z8uA 102 9.60e+00 1v0wA 506 9.92e+00 d.136.1.2,d.136.1.2 108220,108221 1cll 148 9.93e+00 1cll a.39.1.5 17263 1emwA 88 1.05e+01 1emwA d.27.1.1 38448 1wp5A 323 1.12e+01 1ufiA 64 1.16e+01 a.30.4.1 99336 1osa 148 1.17e+01 1cll a.39.1.5 17300 1bbpA 173 1.18e+01 1bbpA b.60.1.1 27147 3proD 166 1.19e+01 3proC d.52.1.1,d.52.1.1 38814,38815 1kq4A 232 1.33e+01 d.207.1.1 68791 2g0uA 92 1.40e+01 1jl5A 454 1.42e+01 c.10.2.6 66830 1g9uA 454 1.42e+01 c.10.2.6 65172 1a3s 160 1.43e+01 1u9aA d.20.1.1 38335 1q2hA 69 1.50e+01 a.34.4.1 104498 1u9aA 160 1.51e+01 1u9aA d.20.1.1 38333 2bydA 323 1.70e+01 1f0iA 504 1.71e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1eqfA 280 1.90e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 2fjlA 150 1.91e+01 1xkpA 246 1.97e+01 1o26A 232 2.01e+01 d.207.1.1 86566 1q1lA 401 2.06e+01 d.258.1.1 95591 1exrA 148 2.08e+01 1cll a.39.1.5 17299 1xttA 216 2.09e+01 1wpaA 114 2.10e+01 1lkkA 105 2.19e+01 1lckA d.93.1.1 40412 1e5mA 416 2.20e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1k4nA 192 2.21e+01 d.32.1.5 72059 1mhlC 466 2.21e+01 1mhlC 2ajrA 331 2.29e+01 1y01A 102 2.29e+01 1wgxA 73 2.30e+01 1d2vC 466 2.31e+01 1mhlC 1yts 278 2.35e+01 1ytw c.45.1.2 32690 1fgyA 127 2.38e+01 1faoA b.55.1.1 26976 1z5yE 149 2.44e+01 1tn4 159 2.49e+01 1ncx a.39.1.5 17248 1pysA 350 2.51e+01 1pysA d.104.1.1 40775 1o04A 500 2.51e+01 c.82.1.1 86508 1fzyA 149 2.51e+01 d.20.1.1 65072 1ytn 306 2.56e+01 1ytw c.45.1.2 32688 1a8y 367 2.56e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1diwA 441 2.59e+01 1a8d b.29.1.6,b.42.4.2 24264,25609 1ytw 306 2.59e+01 1ytw c.45.1.2 32689 1zhxA 438 2.61e+01 1lyvA 306 2.64e+01 c.45.1.2 74348 1ggzA 148 2.66e+01 a.39.1.5 70176 1up8A 598 2.67e+01 a.111.1.2 99710 1wqgA 185 2.67e+01 2aegA 268 2.68e+01 2gl5A 410 2.71e+01 1sseB 86 2.73e+01 1yirA 408 2.73e+01 1yx1A 264 2.78e+01 1cxpC 466 2.89e+01 1mhlC 3cln 148 2.90e+01 1cll a.39.1.5 17286 1jsdA 319 2.91e+01 b.19.1.2 63258 1u7kA 131 2.91e+01 1fjgP 88 2.92e+01 1emwA d.27.1.1 38444 2c43A 323 2.96e+01 1yptA 305 2.96e+01 1ytw c.45.1.2 32686 1lcjA 109 2.97e+01 1qadA d.93.1.1 40414 1w0bA 102 2.98e+01 a.7.11.1 108985 1innA 166 3.01e+01 1j98A d.185.1.2 62608 1vjeA 166 3.02e+01 d.185.1.2 100807 1q02A 52 3.09e+01 a.5.2.1 95490 1jy2O 56 3.11e+01 h.1.8.1 67441 1jy3O 56 3.11e+01 h.1.8.1 67447 1efnA 59 3.11e+01 1bbzA b.34.2.1 24465 2grrA 161 3.12e+01 2db9A 149 3.14e+01 1pwxA 254 3.18e+01 c.2.1.2 95262 1r85A 379 3.24e+01 c.1.8.3 104839 1a3yA 149 3.28e+01 1obpA b.60.1.1 27110 1cuk 203 3.30e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1zmtA 254 3.31e+01 1tf1A 198 3.36e+01 d.110.2.2 106826 1xsjA 778 3.48e+01 1j98A 157 3.58e+01 1j98A d.185.1.2 62755 4bcl 366 3.58e+01 4bcl b.75.1.1 27968 1ej8A 140 3.70e+01 1qupA b.1.8.1 22300 1ag8A 499 3.73e+01 1bpwA c.82.1.1 35341 2fm9A 215 3.76e+01 1d0hA 469 3.77e+01 1a8d b.29.1.6,b.42.4.2 24265,25610 1zvkA 358 3.80e+01 1yua 122 3.81e+01 1yua g.41.3.3,g.41.3.3 45210,45211 1szoA 257 3.81e+01 c.14.1.3 106164 1kshA 186 3.82e+01 c.37.1.8 72914 1dzkA 157 3.85e+01 1obpA b.60.1.1 27096 1w23A 360 3.92e+01 2f3yA 148 3.98e+01 1ta0A 197 4.01e+01 c.108.1.16 106729 2f2hA 773 4.02e+01 2gupA 292 4.06e+01 1shfA 59 4.07e+01 1bbzA b.34.2.1 24462 1hynP 379 4.16e+01 1hynP d.112.1.2 61408 1azgB 67 4.33e+01 1bbzA b.34.2.1 24471 1a8d 452 4.34e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1fxtA 149 4.36e+01 d.20.1.1 65055 1ncx 162 4.39e+01 1ncx a.39.1.5 17222 1top 162 4.39e+01 1ncx a.39.1.5 17223 1vcvA 226 4.45e+01 2a5dA 175 4.47e+01 1lwjA 441 4.54e+01 b.71.1.1,c.1.8.1 74303,74304 1u2eA 289 4.58e+01 1gd8A 118 4.68e+01 d.188.1.1 60445 1b7yA 350 4.68e+01 1pysA d.104.1.1 40776 1yg2A 179 4.75e+01 1zg2A 107 5.09e+01 2h17A 181 5.14e+01 1rpmA 278 5.33e+01 2shpA c.45.1.2 32679 2ddrA 306 5.35e+01 1o9iA 266 5.39e+01 a.25.1.3 92671 1jkvA 266 5.39e+01 a.25.1.3 71719 1brwA 433 5.45e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1r4aA 165 5.57e+01 c.37.1.8 96986 2occE 109 5.63e+01 2occE a.118.11.1 19224 1d9uA 154 5.67e+01 1am7A d.2.1.4 59111 1t6cA 315 5.69e+01 c.55.1.8,c.55.1.8 106558,106559 1g4yR 148 5.75e+01 1cll a.39.1.5 60252 1dkxA 219 5.75e+01 1dkzA a.8.4.1,b.130.1.1 90339,90340 2afwA 329 5.79e+01 1ywlA 96 5.80e+01 1v54E 109 5.86e+01 a.118.11.1 100326 1kllA 130 6.03e+01 d.32.1.2 72720 1nnwA 252 6.07e+01 d.159.1.5 80674 1rp0A 284 6.11e+01 1s0yB 71 6.23e+01 d.80.1.1 98315 1mp8A 281 6.24e+01 d.144.1.7 91384 1preA 470 6.34e+01 1preA d.169.1.2,f.8.1.1 42437,43824 1o8uA 257 6.37e+01 c.14.1.3 81194 1a93A 34 6.39e+01 1a93A h.1.3.1 45543 1wf9A 107 6.39e+01 1cz1A 394 6.40e+01 1cz1A c.1.8.3 28839 1jf4A 147 6.40e+01 a.1.1.2 71643 1zb1A 392 6.54e+01 1veaA 148 6.61e+01 d.275.1.1 108529 1dujA 187 6.62e+01 1dujA d.135.1.1 41449 1z08A 170 6.63e+01 2fh7A 595 6.64e+01 1ofgA 381 6.73e+01 1ofgA c.2.1.3,d.81.1.5 30064,39979 1vkkA 154 6.75e+01 d.109.1.2 108669 1up6A 416 6.84e+01 c.2.1.5,d.162.1.2 107976,107977 1k1fA 72 6.85e+01 a.147.1.1 68007 2b0tA 738 6.91e+01 1jn5B 250 7.02e+01 d.17.4.2 66922 1nrjA 158 7.04e+01 d.110.4.4 86124 1xi7A 61 7.07e+01 2bjkA 516 7.08e+01 1z52A 470 7.11e+01 1dkzA 219 7.12e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1lckA 175 7.16e+01 1lckA b.34.2.1,d.93.1.1 24552,40421 1pkn 530 7.30e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27042,29271,33125 1r8sA 164 7.30e+01 c.37.1.8 97247 1h6dA 433 7.41e+01 c.2.1.3,d.81.1.5 65656,65657 1jkgB 250 7.46e+01 d.17.4.2 66796 1a0nB 69 7.55e+01 1bbzA b.34.2.1 24469 1gt91 357 7.55e+01 1c4zD 154 7.58e+01 1u9aA d.20.1.1 38331 2cglA 489 7.60e+01 1hjp 203 7.66e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16274,17947,25266 1v64A 108 7.70e+01 a.21.1.1 108392 1xzzA 246 7.76e+01 1jj2L 194 7.78e+01 1ffkI d.12.1.2 63097 1uzbA 516 7.92e+01 c.82.1.1 100220 1gd2I 70 8.03e+01 1gd2I h.1.3.1 45532 1u69A 163 8.32e+01 d.32.1.7 107699 1w9yA 319 8.40e+01 1jruA 89 8.44e+01 1jruA d.15.1.2 63257 1lre 81 8.47e+01 1lre a.13.1.1 16376 1vjrA 271 8.53e+01 c.108.1.14 100832 1zoyC 140 8.53e+01 1miuA 738 8.53e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1t3jA 96 8.55e+01 h.4.16.1 106356 1um8A 376 8.56e+01 c.37.1.20 99580 1uqvA 85 8.63e+01 a.60.1.2 99798 1keiA 316 8.65e+01 d.92.1.2 77349 1u1zA 168 8.68e+01 d.38.1.6 107602 1sxjE 354 8.72e+01 a.80.1.1,c.37.1.20 106089,106090 1tiiD 99 8.77e+01 1tiiD b.40.2.1 24965 3bdpA 580 8.82e+01 1xwl c.55.3.5,e.8.1.1 33711,43004 1yh6A 179 8.85e+01 1bjwA 382 8.90e+01 1bjwA c.67.1.1 34349 1t1gA 364 8.93e+01 c.41.1.2 106246 1ynuA 473 8.95e+01 1l3sA 580 8.96e+01 c.55.3.5,e.8.1.1 84521,84522 1ni9A 338 8.99e+01 e.7.1.2 85739 2gokA 429 9.00e+01