# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ap1A 327 8.56e-02 1u9aA 160 1.18e-01 1u9aA d.20.1.1 38333 2grrA 161 1.90e-01 1z8uA 102 4.88e-01 1wg8A 285 1.06e+00 2ahqA 76 1.54e+00 1rypA 243 1.71e+00 1pmaA d.153.1.4 41932 1h6dA 433 2.33e+00 c.2.1.3,d.81.1.5 65656,65657 1h2kA 349 3.22e+00 b.82.2.6 76572 2fa8A 105 3.25e+00 1z5bA 469 3.61e+00 1xqaA 113 4.02e+00 1exrA 148 4.05e+00 1cll a.39.1.5 17299 2a3qA 170 4.11e+00 1r1qA 100 4.12e+00 d.93.1.1 104763 1a8y 367 4.16e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1swvA 267 4.74e+00 1fseA 74 5.05e+00 1fseA a.4.6.2 60000 1td6A 306 5.88e+00 1q1vA 70 5.93e+00 a.159.4.1 104479 2aeuA 374 6.03e+00 1sziA 247 6.15e+00 a.24.23.1 106159 1jy2O 56 6.75e+00 h.1.8.1 67441 1gqeA 365 6.79e+00 e.38.1.1 70351 1wx1A 335 6.84e+00 1jsdA 319 6.89e+00 b.19.1.2 63258 1f20A 435 7.99e+00 b.43.4.1,c.25.1.4 64932,64933 2fi9A 128 8.15e+00 2ajrA 331 8.22e+00 1sflA 238 8.26e+00 2f7fA 494 8.38e+00 1jggA 60 8.46e+00 2hddA a.4.1.1 62950 2db9A 149 8.71e+00 1m3qA 317 9.10e+00 a.96.1.3,d.129.1.2 91184,91185 1uwcA 261 9.13e+00 c.69.1.17 100101 1musA 477 9.51e+00 c.55.3.4 79494 1nepA 130 1.03e+01 b.1.18.7 80440 1yirA 408 1.06e+01 1jl5A 454 1.08e+01 c.10.2.6 66830 1zbqA 327 1.08e+01 1sjiA 350 1.11e+01 1uj8A 77 1.15e+01 1btkA 169 1.21e+01 1btkA b.55.1.1 26959 1lkkA 105 1.22e+01 1lckA d.93.1.1 40412 1qgtA 149 1.23e+01 1qgtA a.62.1.1 18135 2h88C 140 1.25e+01 2gsfA 373 1.29e+01 1eqfA 280 1.36e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 2hddA 61 1.36e+01 2hddA a.4.1.1 15971 1ufiA 64 1.36e+01 a.30.4.1 99336 2f3yA 148 1.45e+01 1w6sB 74 1.45e+01 1ggzA 148 1.50e+01 a.39.1.5 70176 1nvvS 481 1.62e+01 a.117.1.1 86279 1eluA 390 1.65e+01 1elqA c.67.1.3 34434 1b5pA 385 1.68e+01 c.67.1.1 90403 1gu7A 364 1.77e+01 b.35.1.2,c.2.1.1 83321,83322 1fjlA 81 1.79e+01 2hddA a.4.1.1 16017 2fupA 168 1.81e+01 1xttA 216 1.82e+01 2g0uA 92 1.88e+01 2fbwC 141 1.92e+01 1d9cA 121 1.97e+01 1d9cA a.26.1.3 16901 1yf9A 171 1.98e+01 2aegA 268 1.99e+01 1sur 215 2.04e+01 1sur c.26.2.2 31620 1g03A 134 2.13e+01 1qrjB a.73.1.1 60162 1o04A 500 2.17e+01 c.82.1.1 86508 1vgmA 378 2.20e+01 1v9mA 323 2.21e+01 f.40.1.1 100543 1aj8A 371 2.21e+01 1aj8A a.103.1.1 18900 3nul 130 2.21e+01 3nul d.110.1.1 40891 2cglA 489 2.22e+01 1wxcB 134 2.27e+01 2gdnA 267 2.37e+01 1xdfA 157 2.38e+01 1ztpA 251 2.45e+01 1fzqA 181 2.52e+01 1hurA c.37.1.8 32060 1j2mA 99 2.53e+01 a.165.1.1 84018 1gvfA 286 2.54e+01 c.1.10.2 70599 1k8rB 110 2.55e+01 d.15.1.5 72180 1yovA 537 2.56e+01 1qnrA 344 2.56e+01 1qnoA c.1.8.3 28834 1iyjB 817 2.57e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1yf2A 425 2.58e+01 1o5kA 306 2.59e+01 c.1.10.1 92504 1ajsA 412 2.60e+01 1ajsA c.67.1.1 34276 1fipA 98 2.60e+01 1fipA a.4.1.12 18980 1h8eA 510 2.66e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1sg7A 96 2.81e+01 1p5zB 263 2.83e+01 c.37.1.1 87815 1q02A 52 2.89e+01 a.5.2.1 95490 1cuk 203 2.94e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1ars 396 3.08e+01 1ajsA c.67.1.1 34287 2ck3A 510 3.14e+01 1kveB 77 3.17e+01 1kveB 1r0pA 312 3.18e+01 d.144.1.7 96734 2bidA 197 3.20e+01 2bidA f.1.4.1 43398 1nlwB 76 3.24e+01 a.38.1.1 80634 1n2zA 245 3.33e+01 c.92.2.2 79865 1wijA 140 3.34e+01 1sq5A 308 3.34e+01 c.37.1.6 105882 1wmhA 89 3.34e+01 1ayaA 101 3.40e+01 1qadA d.93.1.1 40460 1zedA 484 3.43e+01 2a5lA 200 3.49e+01 1upqA 123 3.51e+01 1sauA 115 3.56e+01 1a8d 452 3.59e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1yh2A 175 3.62e+01 1sk4A 163 3.65e+01 d.118.1.1 105664 1kw4A 89 3.66e+01 a.60.1.2 73077 1k4nA 192 3.67e+01 d.32.1.5 72059 1shuX 182 3.72e+01 c.62.1.1 98882 1nrjA 158 3.74e+01 d.110.4.4 86124 1ujwB 135 3.79e+01 h.4.9.1 99472 1jpzA 473 3.81e+01 a.104.1.1 67069 2dfkA 402 3.81e+01 1rloA 271 3.86e+01 1g8iA 190 4.05e+01 1rec a.39.1.5 60363 1fcyA 236 4.12e+01 2lbd a.123.1.1 19282 2c0rA 362 4.21e+01 1ox0A 430 4.21e+01 c.95.1.1,c.95.1.1 87495,87496 1k7hA 476 4.36e+01 c.76.1.1 72101 1nkpB 83 4.37e+01 a.38.1.1 80574 1wad 112 4.42e+01 3cyr a.138.1.1 19658 1ww9A 392 4.43e+01 2bh8A 101 4.55e+01 1uujA 88 4.58e+01 a.221.1.1 108046 1na6A 404 4.65e+01 b.142.1.1,c.52.1.22 91748,91749 1v4pA 157 4.67e+01 1knvA 293 4.69e+01 c.52.1.7 68707 1fi2A 201 4.82e+01 1fi2A b.82.1.2 59845 1wgxA 73 4.84e+01 1a92A 50 4.85e+01 1a92A h.4.6.1 45791 1z08A 170 4.89e+01 1zvkA 358 4.95e+01 1b7yA 350 4.99e+01 1pysA d.104.1.1 40776 2bi7A 384 5.02e+01 1xdzA 240 5.06e+01 1jyrA 96 5.11e+01 d.93.1.1 71969 2c0hA 353 5.11e+01 2ga9D 469 5.13e+01 1gd8A 118 5.18e+01 d.188.1.1 60445 1twiA 434 5.21e+01 b.49.2.3,c.1.6.1 107399,107400 1qsdA 106 5.22e+01 1qsdA a.7.5.1 16335 1sxrA 183 5.24e+01 d.118.1.1 106101 2bpsA 81 5.29e+01 1hbnC 248 5.31e+01 1mroC d.58.31.1 60902 2fj6A 82 5.36e+01 1zb1A 392 5.37e+01 1dq3A 454 5.43e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1k1fA 72 5.50e+01 a.147.1.1 68007 1up8A 598 5.54e+01 a.111.1.2 99710 2b20A 403 5.55e+01 1vhnA 318 5.58e+01 c.1.4.1 100693 1rq6A 62 5.59e+01 1v2zA 111 5.63e+01 a.186.1.1 108300 2b2yA 187 5.69e+01 1rlmA 271 5.69e+01 1ju3A 583 5.69e+01 b.18.1.13,c.69.1.21 67300,67301 1ckmA 330 5.70e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1zo0A 126 5.72e+01 1uvqA 197 5.73e+01 b.1.1.2,d.19.1.1 100062,100063 2ddrA 306 5.73e+01 1pw4A 451 5.82e+01 f.38.1.1 95198 1xw3A 110 5.88e+01 1pzlA 237 6.04e+01 a.123.1.1 104393 1mdoA 393 6.12e+01 c.67.1.4 79013 1tvlA 454 6.12e+01 c.1.16.4 107366 1wzvA 155 6.20e+01 1kvkA 395 6.24e+01 d.14.1.5,d.58.26.3 73060,73061 1uuhA 159 6.31e+01 d.169.1.4 100008 1yzsA 121 6.38e+01 1qpcA 279 6.40e+01 1fgkA d.144.1.7 41685 1yx1A 264 6.43e+01 1q2hA 69 6.51e+01 a.34.4.1 104498 1akz 223 6.55e+01 3eugA c.18.1.1 31007 2et1A 201 6.61e+01 1uqvA 85 6.61e+01 a.60.1.2 99798 2cx1A 187 6.67e+01 1w4tA 299 6.71e+01 2g7uA 257 6.78e+01 1p5fA 189 6.81e+01 c.23.16.2 94142 1lm8B 118 6.83e+01 d.15.1.1 74033 2a6tA 271 6.87e+01 2b7aA 293 6.97e+01 1qj4A 257 7.02e+01 1qj4A c.69.1.20 34796 1gx3A 284 7.03e+01 d.3.1.5 70678 1ufzA 83 7.13e+01 a.5.9.1 107821 1r8sA 164 7.19e+01 c.37.1.8 97247 1zg2A 107 7.20e+01 2g50A 530 7.27e+01 1jnmA 62 7.38e+01 h.1.3.1 84181 1avsA 90 7.45e+01 1cll a.39.1.5 17226 2bjkA 516 7.60e+01 1e0tA 470 7.61e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1s4kA 120 7.63e+01 a.35.1.6 105254 1v54E 109 7.64e+01 a.118.11.1 100326 1lngA 87 7.69e+01 d.201.1.1 74045 2bllA 345 7.75e+01 2bwfA 77 7.88e+01 1wp5A 323 7.90e+01 1g4wR 383 7.90e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1ub9A 100 7.92e+01 a.4.5.28 99159 1ghhA 81 8.09e+01 1ghhA d.57.1.1 38940 1xn5A 146 8.13e+01 1xg8A 111 8.17e+01 1brwA 433 8.19e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1tazA 365 8.21e+01 a.211.1.2 106734 1kllA 130 8.25e+01 d.32.1.2 72720 1z6oM 191 8.28e+01 1qksA 567 8.28e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1dozA 309 8.38e+01 1ak1 c.92.1.1 35592 1z02A 446 8.44e+01 1gyxA 76 8.46e+01 d.80.1.1 76387 1t1gA 364 8.51e+01 c.41.1.2 106246 1hulA 108 8.55e+01 1hulA a.26.1.2 16865 1oshA 232 8.59e+01 a.123.1.1 93496 1yge 839 8.59e+01 1yge a.119.1.1,b.12.1.1 19234,23634 2fnjB 118 8.62e+01 1uzbA 516 8.64e+01 c.82.1.1 100220 1rrmA 386 8.82e+01 e.22.1.2 105081 1p0kA 349 8.86e+01 c.1.4.1 87648 1qv9A 283 8.87e+01 c.127.1.1 96356 1jflA 228 8.88e+01 c.78.2.1,c.78.2.1 71656,71657 1k04A 162 8.91e+01 a.24.14.1 67904 2a2pA 129 8.95e+01 1oj4A 283 8.95e+01 d.14.1.5,d.58.26.5 93083,93084 2h03A 291 8.97e+01