# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u9aA 160 1.10e-01 1u9aA d.20.1.1 38333 2grrA 161 1.64e-01 1rypA 243 3.11e-01 1pmaA d.153.1.4 41932 2ap1A 327 7.81e-01 2fi9A 128 1.03e+00 1xqaA 113 1.33e+00 1gu7A 364 1.45e+00 b.35.1.2,c.2.1.1 83321,83322 1uujA 88 1.74e+00 a.221.1.1 108046 2a3qA 170 1.76e+00 1exrA 148 1.93e+00 1cll a.39.1.5 17299 1z5bA 469 2.43e+00 2ahqA 76 2.67e+00 1uqvA 85 2.71e+00 a.60.1.2 99798 1wxcB 134 3.25e+00 1z8uA 102 3.38e+00 1swvA 267 3.39e+00 1wijA 140 4.54e+00 1h6dA 433 4.73e+00 c.2.1.3,d.81.1.5 65656,65657 1h2kA 349 4.82e+00 b.82.2.6 76572 1o3yA 166 4.97e+00 c.37.1.8 86618 1yirA 408 5.92e+00 1b5pA 385 6.66e+00 c.67.1.1 90403 1o04A 500 7.01e+00 c.82.1.1 86508 1musA 477 7.12e+00 c.55.3.4 79494 1eqfA 280 7.69e+00 1eqfA a.29.2.1,a.29.2.1 16972,16973 1d9cA 121 7.88e+00 1d9cA a.26.1.3 16901 1a8y 367 7.90e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1jl5A 454 7.98e+00 c.10.2.6 66830 1o26A 232 8.19e+00 d.207.1.1 86566 1fseA 74 8.22e+00 1fseA a.4.6.2 60000 1sziA 247 8.79e+00 a.24.23.1 106159 2h88C 140 8.92e+00 1r8sA 164 9.17e+00 c.37.1.8 97247 2bycA 137 9.38e+00 1wg8A 285 9.76e+00 1lkkA 105 9.94e+00 1lckA d.93.1.1 40412 1f20A 435 1.01e+01 b.43.4.1,c.25.1.4 64932,64933 1jsdA 319 1.03e+01 b.19.1.2 63258 2f46A 156 1.08e+01 1jy2O 56 1.10e+01 h.1.8.1 67441 1gd8A 118 1.15e+01 d.188.1.1 60445 1nepA 130 1.17e+01 b.1.18.7 80440 1fzqA 181 1.17e+01 1hurA c.37.1.8 32060 1wx1A 335 1.24e+01 1wad 112 1.24e+01 3cyr a.138.1.1 19658 1w77A 228 1.31e+01 2f3yA 148 1.38e+01 1uwcA 261 1.40e+01 c.69.1.17 100101 2fbwC 141 1.42e+01 2b20A 403 1.46e+01 1ggzA 148 1.49e+01 a.39.1.5 70176 2cglA 489 1.51e+01 1pw4A 451 1.68e+01 f.38.1.1 95198 1kr4A 125 1.73e+01 d.58.5.2 72889 1g4wR 383 1.84e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1btkA 169 1.89e+01 1btkA b.55.1.1 26959 1w6sB 74 1.96e+01 1hl9A 449 2.02e+01 b.71.1.3,c.1.8.11 90650,90651 2bogX 286 2.04e+01 1qnrA 344 2.06e+01 1qnoA c.1.8.3 28834 2fjlA 150 2.09e+01 1sg7A 96 2.15e+01 2aegA 268 2.15e+01 2aeuA 374 2.16e+01 1r1qA 100 2.16e+01 d.93.1.1 104763 1jggA 60 2.23e+01 2hddA a.4.1.1 62950 1p5zB 263 2.25e+01 c.37.1.1 87815 1yovA 537 2.25e+01 2cx1A 187 2.26e+01 1zd9A 188 2.29e+01 1fi2A 201 2.31e+01 1fi2A b.82.1.2 59845 2c0rA 362 2.35e+01 1yf2A 425 2.38e+01 1k8rB 110 2.50e+01 d.15.1.5 72180 1vgmA 378 2.54e+01 1twiA 434 2.57e+01 b.49.2.3,c.1.6.1 107399,107400 1shuX 182 2.68e+01 c.62.1.1 98882 1kshA 186 2.74e+01 c.37.1.8 72914 1wmhA 89 2.74e+01 2a5dA 175 2.80e+01 1sk4A 163 2.82e+01 d.118.1.1 105664 1ajsA 412 2.90e+01 1ajsA c.67.1.1 34276 1zhcA 76 2.90e+01 2fa8A 105 2.91e+01 2ajrA 331 2.97e+01 1nlwB 76 2.99e+01 a.38.1.1 80634 1ygmA 118 2.99e+01 1td6A 306 2.99e+01 1ww9A 392 3.00e+01 1z6uA 150 3.03e+01 1kxoA 184 3.09e+01 b.60.1.1 84475 1h4pA 408 3.12e+01 c.1.8.3 90617 1i5pA 633 3.14e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2cr9A 139 3.27e+01 1g03A 134 3.28e+01 1qrjB a.73.1.1 60162 1ufzA 83 3.29e+01 a.5.9.1 107821 2gl5A 410 3.29e+01 1wzvA 155 3.37e+01 1nrjA 158 3.44e+01 d.110.4.4 86124 1xdzA 240 3.48e+01 1b7yA 350 3.55e+01 1pysA d.104.1.1 40776 1yg2A 179 3.56e+01 1yf9A 171 3.57e+01 1sjiA 350 3.57e+01 2et1A 201 3.58e+01 1aj8A 371 3.66e+01 1aj8A a.103.1.1 18900 1sxrA 183 3.70e+01 d.118.1.1 106101 1yh2A 175 3.71e+01 1i9zA 347 3.72e+01 1i9yA d.151.1.2 62102 1sauA 115 3.75e+01 1zczA 464 3.77e+01 1nvvS 481 3.78e+01 a.117.1.1 86279 2f7fA 494 3.80e+01 1q1vA 70 3.81e+01 a.159.4.1 104479 1k04A 162 3.81e+01 a.24.14.1 67904 1uvqA 197 3.82e+01 b.1.1.2,d.19.1.1 100062,100063 1zo0A 126 3.83e+01 1ayaA 101 3.84e+01 1qadA d.93.1.1 40460 1go4A 205 3.85e+01 d.135.1.1 70292 2a5lA 200 3.89e+01 1ed8A 449 3.89e+01 1b8jA c.76.1.1 34988 1rrmA 386 3.90e+01 e.22.1.2 105081 2dfkA 402 3.91e+01 1qgtA 149 3.93e+01 1qgtA a.62.1.1 18135 1ov2A 99 3.97e+01 a.13.1.1 93580 2ddrA 306 3.97e+01 1up8A 598 4.07e+01 a.111.1.2 99710 3nul 130 4.09e+01 3nul d.110.1.1 40891 1kvkA 395 4.12e+01 d.14.1.5,d.58.26.3 73060,73061 1na6A 404 4.15e+01 b.142.1.1,c.52.1.22 91748,91749 1tazA 365 4.24e+01 a.211.1.2 106734 2cxxA 190 4.24e+01 1m3qA 317 4.34e+01 a.96.1.3,d.129.1.2 91184,91185 1xdfA 157 4.35e+01 1lngA 87 4.37e+01 d.201.1.1 74045 1iirA 415 4.37e+01 1iirA c.87.1.5 62453 2db9A 149 4.49e+01 2gsfA 373 4.53e+01 1rdfA 267 4.54e+01 c.108.1.3 104884 1mlwA 301 4.68e+01 d.178.1.1 79289 1w4tA 299 4.69e+01 1hs7A 97 4.74e+01 1hs7A a.47.2.1 61236 1gwiA 411 4.76e+01 a.104.1.1 76364 1n82A 331 4.79e+01 c.1.8.3 91703 1upqA 123 4.82e+01 2bidA 197 4.84e+01 2bidA f.1.4.1 43398 1o0yA 260 4.87e+01 c.1.10.1 80756 2fulA 178 4.87e+01 1vjeA 166 4.93e+01 d.185.1.2 100807 1z02A 446 4.95e+01 2avdA 219 4.97e+01 2b8nA 429 5.03e+01 1ztpA 251 5.17e+01 1r85A 379 5.19e+01 c.1.8.3 104839 1jpaA 312 5.19e+01 d.144.1.7 67011 1r8iA 213 5.20e+01 a.8.7.1 97239 1ckmA 330 5.27e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 2f96A 224 5.27e+01 1ufiA 64 5.32e+01 a.30.4.1 99336 1qj4A 257 5.34e+01 1qj4A c.69.1.20 34796 1h97A 147 5.35e+01 1h97A a.1.1.2 60812 1vjyA 303 5.37e+01 d.144.1.7 108633 1uptA 171 5.45e+01 c.37.1.8 99767 1akz 223 5.65e+01 3eugA c.18.1.1 31007 1zbqA 327 5.66e+01 2fupA 168 5.68e+01 1wpiA 133 5.69e+01 2c43A 323 5.70e+01 1k7hA 476 5.72e+01 c.76.1.1 72101 1qksA 567 5.74e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1a8d 452 5.79e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1fipA 98 5.82e+01 1fipA a.4.1.12 18980 1u0mA 382 5.86e+01 c.95.1.2,c.95.1.2 107557,107558 2a2pA 129 5.89e+01 1dozA 309 5.96e+01 1ak1 c.92.1.1 35592 2bwvA 440 6.10e+01 2acvA 463 6.14e+01 1qpcA 279 6.21e+01 1fgkA d.144.1.7 41685 1xawA 140 6.23e+01 1vhnA 318 6.27e+01 c.1.4.1 100693 1uyrA 737 6.29e+01 c.14.1.4,c.14.1.4 100188,100189 1hbnC 248 6.34e+01 1mroC d.58.31.1 60902 1uj8A 77 6.37e+01 2az0A 73 6.39e+01 2gdnA 267 6.42e+01 2c71A 216 6.43e+01 1avsA 90 6.46e+01 1cll a.39.1.5 17226 1pzlA 237 6.47e+01 a.123.1.1 104393 2bwfA 77 6.54e+01 1ykuA 136 6.78e+01 1z21A 112 6.79e+01 1v54E 109 6.81e+01 a.118.11.1 100326 1cuk 203 6.83e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1t7vA 278 6.91e+01 2ffeA 311 7.00e+01 1h5wA 309 7.11e+01 e.27.1.1 65635 1fy7A 278 7.12e+01 1fy7A d.108.1.1 40817 1y2kA 349 7.21e+01 1qhtA 775 7.26e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1x3lA 440 7.37e+01 1ywzA 175 7.38e+01 1nq7A 244 7.39e+01 a.123.1.1 92047 1mtyD 512 7.43e+01 1mhyD a.25.1.2 16742 1j2mA 99 7.48e+01 a.165.1.1 84018 1o5kA 306 7.53e+01 c.1.10.1 92504 1vlaA 150 7.64e+01 d.227.1.2 108735 2ga9D 469 7.66e+01 1u19A 349 7.66e+01 1n8fA 350 7.66e+01 c.1.10.4 85397 1hn0A 1021 7.73e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1kllA 130 7.75e+01 d.32.1.2 72720 1eg3A 261 7.82e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2g7uA 257 7.87e+01 1nkpB 83 7.92e+01 a.38.1.1 80574 1eu8A 409 7.96e+01 1eu8A c.94.1.1 59502 1su0B 159 8.08e+01 d.224.1.2 106015 1oj4A 283 8.19e+01 d.14.1.5,d.58.26.5 93083,93084 1oywA 523 8.31e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1jyrA 96 8.40e+01 d.93.1.1 71969 1yeyA 444 8.48e+01 1qv9A 283 8.49e+01 c.127.1.1 96356 1xweA 151 8.51e+01 1ty0A 211 8.52e+01 b.40.2.2,d.15.6.1 107440,107441 2d81A 318 8.56e+01 2ffsA 157 8.57e+01 1zg2A 107 8.60e+01 1vbvA 105 8.62e+01 1jbeA 128 8.66e+01 3chy c.23.1.1 62845 1sflA 238 8.67e+01 2f02A 323 8.67e+01 1a6s 87 8.69e+01 1a6s a.61.1.4 18134 2gkpA 167 8.77e+01 1zvnA 99 8.78e+01 1gvfA 286 8.83e+01 c.1.10.2 70599 1zgdA 312 8.87e+01 1ig8A 486 8.87e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2b2yA 187 8.90e+01 1opjA 293 8.90e+01 d.144.1.7 87230 1s9kD 53 8.91e+01 1sq5A 308 8.92e+01 c.37.1.6 105882