# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uujA 88 3.87e-01 a.221.1.1 108046 2fj6A 82 6.39e-01 1swvA 267 1.23e+00 2ahqA 76 1.55e+00 2a3qA 170 1.69e+00 1exrA 148 1.72e+00 1cll a.39.1.5 17299 1llmC 88 2.10e+00 g.37.1.1,g.37.1.1 91059,91060 1uyrA 737 2.19e+00 c.14.1.4,c.14.1.4 100188,100189 1yirA 408 2.87e+00 1gvjA 146 2.90e+00 a.4.5.21 90525 2ctdA 96 3.49e+00 2f3yA 148 3.63e+00 1ggzA 148 3.71e+00 a.39.1.5 70176 1gd8A 118 3.81e+00 d.188.1.1 60445 1rdfA 267 3.87e+00 c.108.1.3 104884 1neu 124 4.97e+00 1neu b.1.1.1 19704 1xqaA 113 5.21e+00 1x6iA 91 5.84e+00 1kr4A 125 6.24e+00 d.58.5.2 72889 1s4kA 120 6.54e+00 a.35.1.6 105254 2b1xB 172 6.77e+00 1pyoB 105 7.39e+00 1kw4A 89 7.81e+00 a.60.1.2 73077 1ov2A 99 7.92e+00 a.13.1.1 93580 1iapA 211 7.95e+00 a.91.1.1 62119 1z5bA 469 7.96e+00 1v54D 147 9.34e+00 f.23.1.1 100325 1zlhB 75 9.43e+00 1r03A 182 1.15e+01 a.25.1.1 104675 2bh8A 101 1.18e+01 1q1vA 70 1.19e+01 a.159.4.1 104479 1gvp 87 1.21e+01 1gvp b.40.4.7 25369 1adr 76 1.21e+01 1r69 a.35.1.2 17042 1r1qA 100 1.28e+01 d.93.1.1 104763 1t3wA 148 1.36e+01 1thtA 305 1.42e+01 1thtA c.69.1.13 34711 1bgf 124 1.49e+01 1bgf a.90.1.1 18537 1w2xA 758 1.52e+01 c.14.1.4,c.14.1.4 109134,109135 1w7jB 151 1.52e+01 1aoy 78 1.55e+01 1aoy a.4.5.3 16087 1sk4A 163 1.65e+01 d.118.1.1 105664 1pmnA 364 1.67e+01 d.144.1.7 94907 1yqtA 538 1.67e+01 1ky3A 182 1.70e+01 c.37.1.8 73193 1ztsA 139 1.72e+01 1weyA 104 1.73e+01 2dbgA 103 1.78e+01 1wsrA 375 1.80e+01 1twuA 139 1.92e+01 d.32.1.8 107413 1gmjA 84 2.03e+01 h.4.8.1 65310 2bfdA 400 2.06e+01 2be4A 272 2.25e+01 1yuiA 54 2.25e+01 1yuiA g.37.1.1 45073 1jl5A 454 2.31e+01 c.10.2.6 66830 1okhA 46 2.48e+01 g.13.1.1 93253 1ueoA 63 2.50e+01 j.107.1.1 99269 1vq0A 302 2.53e+01 1nulA 152 2.60e+01 1nulA c.61.1.1 34011 1y6xA 93 2.63e+01 1hulA 108 2.72e+01 1hulA a.26.1.2 16865 2an9A 207 2.72e+01 2c60A 111 2.73e+01 1i7wB 151 2.83e+01 1i7wB j.71.1.1 61910 1hhnA 101 2.90e+01 1hhnA b.104.1.1 61043 2d4pA 141 2.98e+01 1x7yA 400 3.02e+01 1yewA 382 3.03e+01 1d9cA 121 3.09e+01 1d9cA a.26.1.3 16901 1lkkA 105 3.16e+01 1lckA d.93.1.1 40412 1kn7A 78 3.29e+01 j.12.1.1 84413 1rp3B 88 3.30e+01 a.137.11.1 97681 1fseA 74 3.31e+01 1fseA a.4.6.2 60000 1cyx 205 3.36e+01 1cyx b.6.1.2 23023 1g4iA 123 3.48e+01 1poa a.133.1.2 60241 1otgA 125 3.63e+01 1otgA d.80.1.2 39831 1mhqA 148 3.66e+01 a.118.9.2 84973 1zo0A 126 3.68e+01 2h3jA 75 3.68e+01 1w6sB 74 3.71e+01 2a2pA 129 4.07e+01 1yiyA 429 4.08e+01 2g7uA 257 4.12e+01 1poiA 317 4.15e+01 1poiA c.124.1.2 34153 2g0uA 92 4.25e+01 1u58A 253 4.25e+01 1b6g 310 4.30e+01 1b6g c.69.1.8 34661 1yizA 429 4.46e+01 1g4yB 101 4.49e+01 1g4yB f.15.1.1 60251 1lfb 99 4.57e+01 1lfb a.4.1.1 15989 1nepA 130 4.61e+01 b.1.18.7 80440 1tbxA 99 4.63e+01 a.4.5.48 106748 1w9cA 321 4.67e+01 2aheA 267 4.68e+01 1qfoA 119 4.69e+01 1qfoA b.1.1.1 19708 1dwkA 156 4.70e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1fjgN 61 4.89e+01 1fjfN g.39.1.7 45154 2cjtA 131 4.94e+01 1paqA 189 5.01e+01 a.118.1.14 94413 1or7A 194 5.04e+01 a.4.13.2,a.177.1.1 87332,87333 1euvB 86 5.07e+01 1a5r d.15.1.1 37598 1tvlA 454 5.30e+01 c.1.16.4 107366 1p4kA 295 5.38e+01 d.153.1.5 87772 1nrjA 158 5.39e+01 d.110.4.4 86124 2b20A 403 5.45e+01 2c5rA 67 5.59e+01 2g0qA 173 5.83e+01 1ocyA 198 5.86e+01 d.231.1.1 86817 1z91A 147 5.98e+01 2f46A 156 5.98e+01 1zx4A 192 5.99e+01 1j2mA 99 6.08e+01 a.165.1.1 84018 1rxdA 159 6.13e+01 1zhcA 76 6.16e+01 1psrA 100 6.17e+01 1psrA a.39.1.2 17180 1jatB 138 6.29e+01 1jatB d.20.1.1 62819 1nrjB 218 6.32e+01 c.37.1.8 86125 1voqa 90 6.37e+01 1l6kA 77 6.48e+01 h.6.1.1 77724 1s3cA 141 6.49e+01 1pea 385 6.50e+01 1pea c.93.1.1 35662 1fi2A 201 6.51e+01 1fi2A b.82.1.2 59845 2g2kA 170 6.55e+01 1wr2A 238 6.56e+01 2et1A 201 6.63e+01 1uzeA 589 6.79e+01 d.92.1.5 108174 2a9uA 144 6.80e+01 1l8dA 112 6.83e+01 h.4.12.1 73687 1z5yE 149 6.87e+01 1hn4A 131 6.91e+01 a.133.1.2 65893 2bnuA 203 6.93e+01 2sli 679 7.05e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1xtpA 254 7.19e+01 1wad 112 7.25e+01 3cyr a.138.1.1 19658 2b9dA 52 7.40e+01 1w8xM 83 7.41e+01 1l9lA 74 7.44e+01 a.64.1.1 77827 1wqjB 80 7.44e+01 1dzlA 505 7.56e+01 1dzlA b.121.6.1 23586 1t0hA 132 7.73e+01 b.34.2.1 106207 2bdeA 470 7.74e+01 1okiA 210 7.78e+01 b.11.1.1,b.11.1.1 93255,93256 1q02A 52 7.82e+01 a.5.2.1 95490 2azjA 289 7.84e+01 1nu7D 282 7.95e+01 a.8.6.1,a.8.6.1 92191,92192 1ng6A 148 7.99e+01 a.182.1.1 85670 2af6A 258 8.07e+01 1ttwA 138 8.11e+01 d.198.1.1 107308 1xeeA 91 8.18e+01 1b4fA 82 8.27e+01 1b4fA a.60.1.2 17934 1wp5A 323 8.38e+01 1uqvA 85 8.63e+01 a.60.1.2 99798 1fmhA 33 8.84e+01 1fmhB k.6.1.1 46409 2a6tA 271 8.87e+01 1t6cA 315 8.95e+01 c.55.1.8,c.55.1.8 106558,106559