Best Alignments for T0351

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1khhA/T0351-1khhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1khhA/T0351-1khhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7000e+005.54e+03 c.66.1.16
1exrA/T0351-1exrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1exrA/T0351-1exrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8442e+004.43e-07 1cll a.39.1.5
1yirA/T0351-1yirA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yirA/T0351-1yirA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1762e+008.38e-07
1rqlA/T0351-1rqlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rqlA/T0351-1rqlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3663e+002.59e-02 c.108.1.3
1jl5A/T0351-1jl5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jl5A/T0351-1jl5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6315e+008.71e-07 c.10.2.6
1swvA/T0351-1swvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1swvA/T0351-1swvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6954e+001.32e-02
1zoyC/T0351-1zoyC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zoyC/T0351-1zoyC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9412e+001.61e-02
2ap1A/T0351-2ap1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ap1A/T0351-2ap1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3730e+001.24e+00
1u7kA/T0351-1u7kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u7kA/T0351-1u7kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0147e+009.44e-09
1fseA/T0351-1fseA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fseA/T0351-1fseA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1554e+009.89e-04 1fseA a.4.6.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001