# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uujA 88 4.55e-01 a.221.1.1 108046 1gd8A 118 7.78e-01 d.188.1.1 60445 1exrA 148 8.31e-01 1cll a.39.1.5 17299 1uyrA 737 1.01e+00 c.14.1.4,c.14.1.4 100188,100189 1iapA 211 1.01e+00 a.91.1.1 62119 1yirA 408 1.10e+00 1weyA 104 1.53e+00 1swvA 267 1.58e+00 1z5bA 469 1.69e+00 1mu5A 471 1.75e+00 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1zoyC 140 1.86e+00 1rqlA 267 1.86e+00 c.108.1.3 97750 1y0vH 146 1.95e+00 1fezA 256 2.11e+00 1fezA c.108.1.3 43343 1xfxO 149 2.15e+00 1jl5A 454 2.86e+00 c.10.2.6 66830 1p1cA 199 3.19e+00 c.66.1.16 87669 1yg2A 179 3.56e+00 2f3yA 148 4.58e+00 1kr4A 125 4.87e+00 d.58.5.2 72889 1xqaA 113 5.04e+00 1rdfA 267 5.75e+00 c.108.1.3 104884 2fb1A 226 5.82e+00 1ggzA 148 6.18e+00 a.39.1.5 70176 1thtA 305 6.50e+00 1thtA c.69.1.13 34711 1dzlA 505 7.26e+00 1dzlA b.121.6.1 23586 1jatB 138 7.61e+00 1jatB d.20.1.1 62819 1w2xA 758 7.70e+00 c.14.1.4,c.14.1.4 109134,109135 1wsrA 375 8.58e+00 1g4yR 148 8.91e+00 1cll a.39.1.5 60252 2ahqA 76 9.32e+00 2afdA 88 9.42e+00 1zo0A 126 9.80e+00 2fj6A 82 1.05e+01 1ni5A 433 1.11e+01 c.26.2.5,d.229.1.1 80533,80534 1g2fC 90 1.12e+01 k.12.1.1 60222 1xawA 140 1.17e+01 1hfoA 113 1.20e+01 d.80.1.3 61006 1p4kA 295 1.25e+01 d.153.1.5 87772 1ysmA 77 1.27e+01 2avyM 117 1.58e+01 1tn4 159 1.62e+01 1ncx a.39.1.5 17248 2cu1A 103 1.66e+01 1xiuA 230 1.68e+01 1wad 112 1.70e+01 3cyr a.138.1.1 19658 1exg 110 1.79e+01 1exg b.2.2.1 22387 2b20A 403 1.80e+01 2a3qA 170 1.83e+01 2aheA 267 1.84e+01 1fseA 74 1.99e+01 1fseA a.4.6.2 60000 1b6g 310 2.01e+01 1b6g c.69.1.8 34661 1s4kA 120 2.05e+01 a.35.1.6 105254 1ede 310 2.05e+01 1b6g c.69.1.8 34662 1nulA 152 2.20e+01 1nulA c.61.1.1 34011 1hhnA 101 2.29e+01 1hhnA b.104.1.1 61043 1g4iA 123 2.29e+01 1poa a.133.1.2 60241 1x6iA 91 2.36e+01 1fltV 98 2.41e+01 1vpfA g.17.1.1 44751 1ddf 127 2.45e+01 1ddf a.77.1.2 18423 1xg7A 250 2.77e+01 1llmC 88 2.88e+01 g.37.1.1,g.37.1.1 91059,91060 1z91A 147 2.91e+01 1wwtA 88 2.93e+01 1wggA 96 2.95e+01 1n7hA 381 2.96e+01 c.2.1.2 80250 1yk3A 210 2.99e+01 1y6xA 93 3.00e+01 1wwhA 119 3.05e+01 1vq0A 302 3.09e+01 1mkkA 96 3.17e+01 g.17.1.1 79240 1r03A 182 3.31e+01 a.25.1.1 104675 1v98A 140 3.33e+01 1ytfD 121 3.38e+01 1ytfD a.32.1.1,b.56.1.1 16998,27011 1s1hM 132 3.57e+01 i.1.1.1 105165 1wf9A 107 3.57e+01 1pm6A 72 3.62e+01 a.6.1.7 94894 1p4uA 153 3.64e+01 b.1.10.2 87780 2ctdA 96 3.88e+01 2c60A 111 3.89e+01 2bh8A 101 3.96e+01 1v9yA 167 4.04e+01 d.110.3.2 108454 1wp5A 323 4.11e+01 1ztsA 139 4.28e+01 1dnlA 199 4.45e+01 1ci0A b.45.1.1 25753 1d9cA 121 4.46e+01 1d9cA a.26.1.3 16901 2bpsA 81 4.50e+01 1ujwB 135 4.55e+01 h.4.9.1 99472 1dat 174 4.59e+01 2fha a.25.1.1 16677 1uzeA 589 4.64e+01 d.92.1.5 108174 1k1fA 72 4.68e+01 a.147.1.1 68007 1t0hA 132 4.69e+01 b.34.2.1 106207 1uyjA 296 4.73e+01 f.8.1.2 108143 1iakB 185 4.74e+01 1iakB b.1.1.2,d.19.1.1 21626,38200 1qysA 106 4.83e+01 k.41.1.1 96603 1wr2A 238 4.85e+01 2sli 679 5.01e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1nfvA 179 5.04e+01 a.25.1.1 85642 1ov2A 99 5.11e+01 a.13.1.1 93580 1pmi 440 5.12e+01 1pmi b.82.1.3 28114 1t3wA 148 5.12e+01 1w7jB 151 5.13e+01 1vqb 87 5.20e+01 1gvp b.40.4.7 25370 1pea 385 5.23e+01 1pea c.93.1.1 35662 1yb3A 175 5.24e+01 1yruB 74 5.35e+01 1o86A 589 5.37e+01 d.92.1.5 81177 1nh2D 121 5.41e+01 a.32.1.1,b.56.1.1 91876,91877 1jd1A 129 5.42e+01 1qu9A d.79.1.1 62890 1hn4A 131 5.44e+01 a.133.1.2 65893 1xtpA 254 5.47e+01 1gvp 87 5.65e+01 1gvp b.40.4.7 25369 1lre 81 5.77e+01 1lre a.13.1.1 16376 1qqgA 264 5.80e+01 1qqgA b.55.1.2,b.55.1.2 26987,26988 1v1rA 400 5.84e+01 c.36.1.11 108272 1d7mA 101 5.85e+01 1d7mA h.1.10.1 45628 2h3jA 75 5.88e+01 2b1xB 172 5.95e+01 1yaxA 153 5.99e+01 1j2mA 99 6.00e+01 a.165.1.1 84018 1xclA 235 6.01e+01 1twuA 139 6.02e+01 d.32.1.8 107413 1wpaA 114 6.40e+01 1oniA 137 6.41e+01 d.79.1.1 87144 1fjgN 61 6.42e+01 1fjfN g.39.1.7 45154 1fioA 196 6.42e+01 1fioA a.47.2.1 17773 1hulA 108 6.49e+01 1hulA a.26.1.2 16865 1i7wB 151 6.52e+01 1i7wB j.71.1.1 61910 1kveB 77 6.54e+01 1kveB 1k2eA 156 6.57e+01 d.113.1.1 72010 1kd8A 36 6.64e+01 h.1.3.1 68460 1kwgA 645 6.65e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1pn2A 280 6.66e+01 d.38.1.4,d.38.1.4 94930,94931 2atrA 138 6.78e+01 2fefA 294 6.81e+01 2a61A 145 6.92e+01 2d4pA 141 6.94e+01 1bby 69 7.00e+01 2bby a.4.5.15 16149 1kvkA 395 7.04e+01 d.14.1.5,d.58.26.3 73060,73061 2bfdA 400 7.07e+01 2bwfA 77 7.25e+01 1nrjA 158 7.34e+01 d.110.4.4 86124 1a17 166 7.36e+01 1a17 a.118.8.1 19206 1b68A 191 7.37e+01 1nfn a.24.1.1 59076 1z5yE 149 7.38e+01 1sk4A 163 7.50e+01 d.118.1.1 105664 1r48A 35 7.55e+01 h.4.15.1 96981 1se7A 83 7.58e+01 1q1vA 70 7.63e+01 a.159.4.1 104479 1bg1A 722 7.67e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1l6kA 77 7.80e+01 h.6.1.1 77724 2ahmA 88 8.01e+01 1tmzA 32 8.05e+01 1tmzA k.1.1.1 46376 1yrvA 169 8.09e+01 1no4A 97 8.22e+01 h.1.24.1 85918 2a9uA 144 8.25e+01 1wdcC 156 8.27e+01 1wdcC a.39.1.5 17317 1fb6A 105 8.29e+01 1thx c.47.1.1 32739 1x7yA 400 8.29e+01 5pal 109 8.40e+01 1a75A a.39.1.4 17215 2d00A 109 8.46e+01 1v54D 147 8.52e+01 f.23.1.1 100325 1nvvS 481 8.63e+01 a.117.1.1 86279 1o54A 277 8.76e+01 c.66.1.13 92482 1g79A 218 8.77e+01 1ci0A b.45.1.1 25752 1snlA 103 8.92e+01 a.39.1.7 105820 1o51A 114 8.94e+01 d.58.5.4 92480 1wj7A 104 8.96e+01