# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3proC 166 5.30e-01 3proC d.52.1.1,d.52.1.1 38812,38813 1n91A 108 1.73e+00 d.206.1.1 80326 2gu3A 136 1.94e+00 2cnqA 306 3.13e+00 d.143.1.1 130646 1kveB 77 3.17e+00 1kveB 1ohtA 215 3.39e+00 d.118.1.1 87036 1obdA 306 3.43e+00 d.143.1.1 86767 1ylxA 103 3.96e+00 d.82.5.1 123677 1t6sA 162 4.70e+00 a.4.5.60,a.4.5.60 112271,112272 1xw3A 110 4.88e+00 1vpkA 378 4.93e+00 d.131.1.1,d.131.1.1,d.131.1.1 113963,113964,113965 2g3aA 152 5.11e+00 d.108.1.1 134557 1vh5A 148 5.47e+00 d.38.1.5 100642 1ospO 257 6.41e+00 1ospO b.76.1.1 27971 1yzsA 121 6.68e+00 2nr1 27 7.65e+00 1w53A 84 8.09e+00 a.186.1.2 109175 1c44A 123 8.27e+00 1qndA d.106.1.1 40795 1s5jA 847 8.28e+00 c.55.3.5,e.8.1.1 112040,112041 2aq4A 434 8.65e+00 1r8gA 372 8.97e+00 d.128.1.3 104845 1wq3A 322 9.56e+00 1sh8A 154 9.66e+00 d.38.1.5 105549 1v74A 107 9.76e+00 d.243.1.1 100442 1zbfA 142 9.83e+00 c.55.3.1 124850 1p5dX 463 1.09e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1o8xA 146 1.10e+01 c.47.1.10 86681 1gw5S 142 1.15e+01 d.110.4.2 70633 1f1uA 323 1.21e+01 d.32.1.3,d.32.1.3 83200,83201 1ifqA 138 1.27e+01 1ifqA d.110.4.1 62350 1f1xA 322 1.28e+01 d.32.1.3,d.32.1.3 83208,83209 1mngA 203 1.29e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1u5uA 374 1.30e+01 e.5.1.2 113052 1zwyA 185 1.34e+01 c.51.4.3 125753 1bywA 110 1.35e+01 1bywA d.110.3.6 40912 2a2lA 145 1.41e+01 d.110.9.1 126035 1ykdA 398 1.45e+01 1j3bA 529 1.47e+01 c.91.1.1,c.109.1.1 77071,77072 1s6cA 183 1.50e+01 a.39.1.5 98594 2bwqA 129 1.65e+01 b.7.1.2 129380 1tr0A 108 1.69e+01 d.58.4.4 107261 1c8cA 64 1.70e+01 1azpA b.34.13.1 59084 2b9hA 353 1.72e+01 1ym5A 300 1.73e+01 2c6cA 707 1.80e+01 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 1nwzA 125 1.82e+01 d.110.3.1 86370 2afbA 351 1.83e+01 c.72.1.1 126674 1wr2A 238 1.85e+01 2bo9A 308 1.85e+01 c.56.5.1 128897 2igd 61 1.94e+01 2igd 2cunA 410 1.97e+01 2cfuA 658 1.98e+01 1em2A 229 1.99e+01 1em2A d.129.3.2 41321 1qcsA 211 2.02e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1914 232 2.04e+01 1914 1ln1A 214 2.15e+01 d.129.3.2 74038 2es7A 142 2.22e+01 c.47.1.20 132314 1trb 320 2.24e+01 1trb 1mzuA 129 2.27e+01 d.110.3.1 79714 1mixA 206 2.32e+01 a.11.2.1,b.55.1.5 79166,79167 1z9vA 121 2.43e+01 1hbkA 94 2.50e+01 1aca a.11.1.1 60887 1a0p 290 2.54e+01 1a0p 1txvA 452 2.55e+01 b.69.8.1 112783 1ash 150 2.60e+01 1ash 1pvgA 418 2.62e+01 d.14.1.3,d.122.1.2 95161,95162 1xqoA 256 2.68e+01 a.96.1.6 115853 2c7hA 86 2.68e+01 1zchA 255 2.72e+01 d.90.1.1 124908 1vkkA 154 2.72e+01 d.109.1.2 108669 1yewA 382 2.77e+01 1squA 155 2.87e+01 d.252.1.1 98971 1k0hA 117 2.93e+01 b.106.1.2 71975 2gu2A 312 2.98e+01 1y08A 323 2.98e+01 d.3.1.12 116280 1usyA 275 3.00e+01 d.104.1.1 113422 1vl2A 421 3.03e+01 c.26.2.1,d.210.1.1 108708,108709 1t0hB 224 3.03e+01 c.37.1.1 106208 2f9lA 199 3.10e+01 c.37.1.8 133166 1sviA 195 3.18e+01 c.37.1.8 106048 2ajrA 331 3.21e+01 c.72.1.1 126892 2essA 248 3.26e+01 d.38.1.8,d.38.1.8 132346,132347 1v3wA 173 3.26e+01 b.81.1.5 100291 1a9xA 1058 3.27e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1gxrA 337 3.38e+01 b.69.4.1 70722 1crzA 403 3.38e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1p4fA 293 3.39e+01 d.144.1.7 104063 1jnyA 435 3.42e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1v7cA 351 3.45e+01 c.79.1.1 100446 1n9lA 109 3.49e+01 d.110.3.6 85468 1z2nX 324 3.55e+01 1yduA 170 3.56e+01 b.162.1.1 123003 1zceA 155 3.59e+01 b.122.1.8 124907 2fclA 169 3.60e+01 d.218.1.11 133273 1jovA 270 3.61e+01 b.30.5.7 84192 1z5bA 469 3.65e+01 a.156.1.3,d.14.1.3,d.122.1.2 124464,124465,124466 1x47A 98 3.69e+01 d.50.1.1 121680 1m55A 197 3.75e+01 d.89.1.3 74469 1x7yA 400 3.76e+01 c.36.1.11 114944 2bfdA 400 3.80e+01 1jvbA 347 3.81e+01 b.35.1.2,c.2.1.1 77181,77182 1e0cA 271 3.83e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 2a3qA 170 3.84e+01 a.204.1.2 126092 1q7lA 198 3.87e+01 c.56.5.4 96044 1oxxK 353 3.90e+01 b.40.6.3,c.37.1.12 93715,93716 1cs0A 1073 3.90e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2cyjA 118 3.91e+01 c.103.1.1 131026 1jayA 212 3.94e+01 c.2.1.6 66478 1r7aA 504 3.99e+01 b.71.1.1,c.1.8.1 97192,97193 1wqaA 455 4.00e+01 2g0wA 296 4.04e+01 c.1.15.4 134503 1pguA 615 4.14e+01 b.69.4.1,b.69.4.1 88069,88070 1lm4A 194 4.14e+01 d.167.1.1 84626 1in0A 163 4.15e+01 d.58.49.1,d.58.49.1 83694,83695 1fit 147 4.19e+01 1fit 2gjgA 248 4.20e+01 1nscA 390 4.21e+01 2qwc b.68.1.1 27591 1iybA 208 4.28e+01 d.124.1.1 90720 1mjhA 162 4.34e+01 1mjhA c.26.2.4 31639 1u04A 771 4.38e+01 b.34.14.1,c.55.3.10 107539,107540 1h2kA 349 4.40e+01 b.82.2.6 76572 1v6zA 228 4.42e+01 b.122.1.2,c.116.1.5 113551,113552 2bvfA 459 4.46e+01 1dq3A 454 4.52e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1d0cA 444 4.55e+01 d.174.1.1 64769 1q7sA 117 4.63e+01 c.131.1.1 96055 1wy0A 342 4.63e+01 1cdcA 99 4.64e+01 1cdcA b.1.1.1 19746 2gi9A 56 4.65e+01 1ob8A 135 4.70e+01 c.52.1.18 111627 1o26A 232 4.71e+01 d.207.1.1 86566 1zmeC 70 4.79e+01 1zmeC g.38.1.1,h.1.3.1 45081,45514 1nlfA 279 4.81e+01 c.37.1.11 85850 1fzcA 87 4.81e+01 1fzcA h.1.8.1 45590 1a1x 108 4.83e+01 1a1x 1ebfA 358 4.85e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1t4hA 290 4.90e+01 d.144.1.7 106420 1utcA 363 4.91e+01 a.118.1.4,b.69.6.1 99914,99915 1yarH 217 4.95e+01 d.153.1.4 122844 1vd3A 217 4.99e+01 1q4rA 112 5.10e+01 d.58.4.4 95823 2f57A 317 5.28e+01 2fo3A 125 5.29e+01 d.20.1.1 133868 1nrlA 316 5.59e+01 a.123.1.1 92091 1dkzA 219 5.60e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1zatA 250 5.61e+01 b.160.1.1,d.335.1.1 124845,124846 830cA 168 5.68e+01 1ck7A d.92.1.11 40400 1zaiA 363 5.68e+01 c.1.10.1 124828 1jc9A 269 5.70e+01 d.171.1.1 66490 1ywqA 200 5.71e+01 d.90.1.1 124162 1vclA 432 5.71e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1vggA 161 5.75e+01 d.256.1.1 113647 1o04A 500 5.90e+01 c.82.1.1 86508 1a99A 344 5.90e+01 1pot c.94.1.1 35812 1d4oA 184 5.95e+01 1d4oA c.31.1.4 31748 1u84A 90 5.96e+01 a.230.1.1 113114 1rypB 250 5.97e+01 1rypB d.153.1.4 41933 1e4fT 419 6.05e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1xr4A 509 6.12e+01 c.124.1.2,c.124.1.2 115860,115861 1fc6A 388 6.18e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1gmiA 136 6.19e+01 b.7.1.1 65309 2dlbA 80 6.20e+01 1xhdA 173 6.27e+01 b.81.1.5 115295 2fckA 181 6.28e+01 d.108.1.1 133272 1wvqA 167 6.28e+01 1r2jA 366 6.33e+01 a.29.3.1,e.6.1.1 96869,96870 1oo0A 147 6.34e+01 d.232.1.1 87182 1z5sD 83 6.43e+01 2gk9A 426 6.60e+01 1ta8A 332 6.85e+01 d.142.2.2 112375 1kwaA 88 6.86e+01 1kwaA b.36.1.1 24772 1mi3A 322 6.95e+01 c.1.7.1 91274 1ogaD 215 6.96e+01 b.1.1.1,b.1.1.2 86990,86991 1gzcA 239 6.98e+01 b.29.1.1 70803 1pswA 348 7.02e+01 c.87.1.7 88287 1c1lA 136 7.04e+01 1c1lA b.29.1.3 24219 1nzyA 269 7.05e+01 1nzyA c.14.1.3 30903 1j6qA 136 7.09e+01 b.40.9.1 77091 1rwiA 270 7.10e+01 b.68.9.1 97987 1quqB 121 7.12e+01 1quqB b.40.4.3 25305 1y96B 85 7.14e+01 1at0 145 7.14e+01 1at0 1w6sB 74 7.23e+01 a.137.2.1 114285 1go4A 205 7.26e+01 d.135.1.1 70292 1w96A 554 7.35e+01 b.84.2.1,c.30.1.1,d.142.1.2 114397,114398,114399 1ykhB 132 7.38e+01 a.252.1.1 123519 2fwuA 157 7.43e+01 b.1.27.1 134262 1e2kA 331 7.47e+01 1qhiA c.37.1.1 31854 1fp1D 372 7.48e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1s3sG 127 7.48e+01 d.15.1.2 98457 1iktA 120 7.56e+01 d.106.1.1 66188 2cq8A 110 7.57e+01 1aqcA 172 7.57e+01 1x11A b.55.1.2 26983 1zejA 293 7.73e+01 1j8uA 325 7.91e+01 d.178.1.1 71611 1f7sA 139 7.93e+01 1cof d.109.1.2 40857 1iq5B 27 7.97e+01 1xyiA 66 8.11e+01 1zjcA 418 8.17e+01 e.60.1.1 125147 1iujA 106 8.19e+01 d.58.4.5 90701 1e8gA 560 8.24e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1oeyJ 107 8.25e+01 d.15.2.2 92804 1nqkA 381 8.26e+01 c.1.16.4 92050 1yarA 233 8.26e+01 d.153.1.4 122837 1b06A 210 8.29e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1r7mA 235 8.30e+01 d.95.2.1,d.95.2.1 111713,111714 1dosA 358 8.52e+01 1dosA c.1.10.2 29175 2cy5A 140 8.53e+01 b.55.1.2 131018 2ex3B 264 8.54e+01 a.263.1.1 132500 1u07A 90 8.59e+01 d.212.1.2 112902 1fcdA 401 8.62e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1kutA 230 8.66e+01 d.143.1.1 73017 1ud0A 113 8.69e+01 a.8.4.1 99198 2bf6A 449 8.69e+01 1sxrA 183 8.72e+01 d.118.1.1 106101 2axtJ 40 8.72e+01 1tqzA 133 8.73e+01 b.55.1.11 119327 2an3A 289 8.74e+01 c.66.1.15 127027 2h4uA 145 8.87e+01 d.38.1.5 136082 1w2lA 99 8.88e+01 2akoA 251 8.95e+01 c.73.1.3 126923