CreatePredAlphaCost pred_alpha2k alpha11 T0349.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0349.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0349.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 20 dry6.5 30 dry8 20 dry12 5 \ phobic_fit 3 \ n_ca_c 10 bad_peptide 20 \ sidechain 5 \ bystroff 8 \ soft_clashes 50 backbone_clashes 2 \ break 150 \ pred_alpha2k 3 \ pred_alpha04 4 \ pred_alpha06 5 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 # from decoys/try8-opt2.sheets SheetConstraint M1 N8 V50 V43 hbond M1 1 SheetConstraint M1 R2 D74 S73 hbond R2 1 SheetConstraint R2 R6 R72 A68 hbond L4 1 SheetConstraint G26 L28 L49 R47 hbond G26 1 SheetConstraint L28 V29 V48 R47 hbond V29 1 # from decoys/try8-opt2.helices HelixConstraint D9 A23 1 HelixConstraint S35 S40 1 HelixConstraint D54 G66 1