Best Alignments for T0349

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1zhvA/T0349-1zhvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zhvA/T0349-1zhvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4441e-021.03e-11
1yj7A/T0349-1yj7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yj7A/T0349-1yj7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6228e-011.81e-08
1nm2A/T0349-1nm2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1nm2A/T0349-1nm2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7750e-015.93e-10 c.19.1.1
d.58.23.1
1he2A/T0349-1he2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1he2A/T0349-1he2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8796e-018.43e-07 1he2A c.2.1.2
1g61A/T0349-1g61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g61A/T0349-1g61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2203e-012.66e-08 1g61A d.126.1.1
1a3yA/T0349-1a3yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a3yA/T0349-1a3yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6347e-017.66e-08 1obpA b.60.1.1
1kwmA/T0349-1kwmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kwmA/T0349-1kwmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8185e-015.48e-09 c.56.5.1
d.58.3.1
1vjqA/T0349-1vjqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjqA/T0349-1vjqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0605e-013.39e-06 k.43.1.1
1cye/T0349-1cye-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cye/T0349-1cye-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4502e-013.81e-06 3chy c.23.1.1
1ble/T0349-1ble-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ble/T0349-1ble-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8802e-017.15e-08 1ble c.38.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001