# List of top-scoring protein chains for T0349.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1umnA 165 1.50e+00 a.25.1.1 99607 1idm 343 1.62e+00 1cnzA c.77.1.1 35035 1g2uA 345 1.66e+00 1cnzA c.77.1.1 35036 1gc8A 345 1.67e+00 1cnzA c.77.1.1 35042 1dr8A 344 1.67e+00 1cnzA c.77.1.1 35051 1osjA 345 1.67e+00 1cnzA c.77.1.1 35039 1dr0A 346 1.67e+00 1cnzA c.77.1.1 35045 1gc9A 345 1.67e+00 1cnzA c.77.1.1 35037 1ipd 345 1.67e+00 1cnzA c.77.1.1 35038 1xaa 345 1.67e+00 1cnzA c.77.1.1 35033 1xad 345 1.67e+00 1cnzA c.77.1.1 35055 1walA 345 1.69e+00 1cnzA c.77.1.1 35041 1dpzA 349 1.69e+00 1cnzA c.77.1.1 35053 2g0dA 409 1.72e+00 1x9fB 145 1.89e+00 1iwpB 194 2.73e+00 c.51.3.1 76885 1mmfB 194 2.74e+00 c.51.3.1 85019 2eueA 275 3.97e+00 2fh9A 274 4.00e+00 1jt8A 102 4.03e+00 b.40.4.5 63279 1uspB 139 4.74e+00 d.227.1.1 99880 2ayqA 366 4.87e+00 1cnzA c.77.1.1 35057 1v53A 366 4.87e+00 1uspA 139 4.94e+00 d.227.1.1 99879 1ug1A 92 6.61e+00 b.34.2.1 99360 1jd1A 129 8.08e+00 1qu9A d.79.1.1 62890 1k4nA 192 8.83e+00 d.32.1.5 72059 1ewsA 32 8.83e+00 1ewsA g.9.1.1 59534 1kugA 203 1.08e+01 d.92.1.9 73008 1v5bA 366 1.14e+01 1kufA 203 1.19e+01 d.92.1.9 73007 1ve1A 304 1.33e+01 2gq1A 332 1.33e+01 1wkrA 340 1.42e+01 b.50.1.2 109395 1g61A 228 1.42e+01 1g61A d.126.1.1 41126 1rz4A 226 1.42e+01 a.4.5.53,a.118.1.18 105131,105132 2cucA 70 1.45e+01 1a05A 358 1.49e+01 1cnzA c.77.1.1 35059 1i9cA 137 1.61e+01 c.23.6.1 71136 1w2wB 191 1.64e+01 1ccwA 137 1.67e+01 1be1 c.23.6.1 31238 1mffA 114 1.84e+01 1dptA d.80.1.3 39859 1kvnA 104 1.97e+01 d.201.1.1 73066 1rtxA 123 2.19e+01 a.1.1.1 97827 1s69A 124 2.20e+01 a.1.1.1 105305 1b1a 137 2.22e+01 1be1 c.23.6.1 31242 1q8lA 84 2.44e+01 d.58.17.1 96214 2a9sA 171 2.63e+01 2ajaA 376 2.67e+01 1lilA 212 2.71e+01 8fabA b.1.1.1,b.1.1.2 20557,21466 1idrA 136 2.75e+01 1dlyA a.1.1.1 62301 1vqoB 338 2.86e+01 1jj2B 337 2.86e+01 1ffkB b.43.3.2 63086 1qtwA 285 3.12e+01 1qumA c.1.15.1 29392 1oziA 99 3.17e+01 b.36.1.1 93845 1p1eA 101 3.17e+01 b.36.1.1 93898 1xhfA 123 3.30e+01 1wy5A 317 3.31e+01 2chy 128 3.39e+01 3chy c.23.1.1 31081 2g8jA 339 3.40e+01 1oxkB 134 3.59e+01 c.23.1.1 93691 1v5qA 122 3.75e+01 b.36.1.1 108383 1ffkB 337 3.85e+01 1ffkB b.43.3.2 25719 1mfiA 114 3.89e+01 1dptA d.80.1.3 39856 1s6oA 76 3.95e+01 d.58.17.1 98597 1zhvA 134 3.97e+01 1yl3E 338 3.97e+01 2cvlA 124 4.01e+01 1wdyA 285 4.03e+01 1jb0F 164 4.14e+01 1jb0F f.23.16.1 62825 1l3iA 192 4.14e+01 c.66.1.22 77676 1pdqA 72 4.26e+01 b.34.13.2 94590 2bkrA 212 4.52e+01 1kdhA 363 4.66e+01 a.60.6.1,a.60.12.1,d.218.1.2 72349,75882,75883 1vlcA 366 4.69e+01 c.77.1.1 108743 1jmsA 381 4.77e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1gm1A 94 4.77e+01 b.36.1.1 70271 1d2vC 466 4.78e+01 1mhlC 1xt9A 212 4.79e+01 2cubA 88 4.86e+01 1y37A 304 4.92e+01 2fc8A 102 4.97e+01 2b9bA 497 4.98e+01 1yioA 208 5.03e+01 1vj6A 102 5.07e+01 1umgA 362 5.11e+01 d.280.1.1 107956 1c1gA 284 5.26e+01 1c1gA h.1.5.1 45573 1o57A 291 5.62e+01 a.4.5.40,c.61.1.1 92483,92484 1c41A 200 5.64e+01 1di0A c.16.1.1 30962 1mwqA 101 5.70e+01 d.58.4.7 91481 1p4aA 285 5.74e+01 a.4.5.40,c.61.1.1 94090,94091 1iodG 44 5.83e+01 1cfi g.32.1.1 62624 1l5jA 865 5.97e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1o7dD 282 6.00e+01 1kvzA 107 6.14e+01 d.5.1.1 73068 1sgwA 214 6.51e+01 c.37.1.12 105541 1a3yA 149 6.67e+01 1obpA b.60.1.1 27110 1elvA 333 6.87e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1h6hA 143 7.07e+01 d.189.1.1 65681 2d83A 363 7.07e+01 1ufoA 238 7.08e+01 c.69.1.27 99344 2d1uA 104 7.08e+01 1uhpA 107 7.55e+01 b.36.1.1 99400 1dzkA 157 7.57e+01 1obpA b.60.1.1 27096 2bqzA 161 7.60e+01 1pfbA 55 7.73e+01 b.34.13.2 94655 1rmg 422 7.75e+01 1rmg b.80.1.3 28029 2f06A 144 7.76e+01 1zkkA 167 7.77e+01 2f4nA 273 8.15e+01 1v54E 109 8.17e+01 a.118.11.1 100326 1hdoA 206 8.25e+01 1he2A c.2.1.2 60965 2fe7A 166 8.26e+01 1k4uS 62 8.30e+01 b.34.2.1 72065 1iqzA 81 8.34e+01 d.58.1.4 66281 1yb2A 275 8.43e+01 2chf 128 8.50e+01 3chy c.23.1.1 31079 2fmkA 129 8.56e+01 1fjgP 88 8.72e+01 1emwA d.27.1.1 38444 1ml5S 91 8.72e+01 i.1.1.1 79274 1hey 128 8.85e+01 3chy c.23.1.1 31061 1t7sA 137 8.88e+01 a.7.7.1 106636 1us8B 144 8.92e+01 1vj1A 363 8.97e+01 b.35.1.2,c.2.1.1 100794,100795 1h3gA 601 8.99e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596