# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vjqA 79 3.78e-02 k.43.1.1 100830 1zhvA 134 5.84e-02 2f06A 144 6.37e-01 1rybA 212 8.80e-01 c.56.3.1 98098 1yj7A 171 9.39e-01 1eexB 224 1.00e+00 1dioB c.51.3.1 33213 1b65A 375 1.33e+00 1b65A d.154.1.1 42020 1gh9A 71 1.39e+00 1gh9A g.41.6.1 45266 1dzkA 157 1.50e+00 1obpA b.60.1.1 27096 1kwmA 402 1.72e+00 c.56.5.1,d.58.3.1 73079,73080 1umgA 362 1.83e+00 d.280.1.1 107956 1xppA 115 2.44e+00 2fclA 169 2.48e+00 2gukA 120 2.55e+00 1jd1A 129 2.62e+00 1qu9A d.79.1.1 62890 1s2oA 244 2.78e+00 1yqhA 109 2.93e+00 2bjiA 277 3.38e+00 1n71A 180 3.52e+00 d.108.1.1 85370 1g61A 228 4.14e+00 1g61A d.126.1.1 41126 1jyeA 349 4.16e+00 c.93.1.1 67455 1ewsA 32 4.30e+00 1ewsA g.9.1.1 59534 1qd9A 124 4.66e+00 1qu9A d.79.1.1 39758 1f2tB 148 4.70e+00 1f2tB 2c60A 111 5.10e+00 1ve1A 304 5.32e+00 1dp4A 435 5.34e+00 1dp4A c.93.1.1 35710 1gt1A 159 5.53e+00 b.60.1.1 90515 1v7rA 186 5.71e+00 c.51.4.1 100482 1omzA 293 5.93e+00 c.68.1.15 87093 2cg4A 152 5.97e+00 2cvlA 124 6.37e+00 1yfnA 118 6.45e+00 2g76A 335 6.50e+00 1hdoA 206 6.85e+00 1he2A c.2.1.2 60965 1kdgA 546 6.95e+00 c.3.1.2,d.16.1.1 77337,77338 1pba 81 7.07e+00 1pytA d.58.3.1 39067 1wcwA 261 7.29e+00 1v6sA 390 7.38e+00 c.86.1.1 100424 1ezwA 349 7.52e+00 1ezwA c.1.16.3 29558 1id1A 153 7.80e+00 1id1A c.2.1.9 62286 1j7xA 302 7.90e+00 c.14.1.2 66425 1gnkA 112 8.07e+00 2pii d.58.5.1 39073 1jbeA 128 8.81e+00 3chy c.23.1.1 62845 1j3mA 129 9.03e+00 d.129.7.1 103836 1x9zA 188 9.23e+00 1meoA 209 9.35e+00 c.65.1.1 79035 1yrrA 382 9.35e+00 1zvpA 133 9.51e+00 1bvoA 175 9.51e+00 1a3qA b.2.5.3 22457 1r6dA 337 9.68e+00 c.2.1.2 97148 1wexA 104 1.01e+01 2fiuA 99 1.02e+01 1jfrA 262 1.03e+01 1jfrA c.69.1.16 34724 1wr8A 231 1.03e+01 1qyrA 252 1.05e+01 c.66.1.24 104657 1mkzA 172 1.06e+01 c.57.1.1 84998 1rp0A 284 1.07e+01 1gmuA 143 1.10e+01 b.107.1.1,d.58.38.1 65335,65336 1oo0A 147 1.11e+01 d.232.1.1 87182 1yqtA 538 1.15e+01 2af4C 333 1.16e+01 1sbyA 254 1.17e+01 2d1uA 104 1.19e+01 1qu9A 128 1.20e+01 1qu9A d.79.1.1 39755 2pii 112 1.24e+01 2pii d.58.5.1 39071 1edg 380 1.24e+01 1edg c.1.8.3 28807 1r1qA 100 1.24e+01 d.93.1.1 104763 8abp 306 1.46e+01 8abp c.93.1.1 35647 1ta3B 303 1.46e+01 c.1.8.3 106732 1oxkB 134 1.47e+01 c.23.1.1 93691 1rz4A 226 1.50e+01 a.4.5.53,a.118.1.18 105131,105132 1cy5A 97 1.51e+01 1cy5A a.77.1.3 18430 1xzzA 246 1.51e+01 1x31C 206 1.52e+01 1atlA 202 1.53e+01 1atlA d.92.1.9 40322 1mucA 373 1.53e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1tl9A 339 1.57e+01 1s69A 124 1.61e+01 a.1.1.1 105305 1wi6A 88 1.67e+01 1ctf 74 1.70e+01 1ctf d.45.1.1 38759 2fe7A 166 1.76e+01 1xd7A 145 1.76e+01 a.4.5.55 109566 1uv7A 110 1.77e+01 d.67.4.1 100040 2cvjA 180 1.82e+01 1qahA 136 1.85e+01 d.79.1.1 96338 1w8iA 156 1.86e+01 1xpmA 396 1.94e+01 1qysA 106 1.97e+01 k.41.1.1 96603 1bu8A 452 1.98e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1dkuA 317 1.99e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1rypL 212 2.01e+01 d.153.1.4 41880 2bepA 159 2.03e+01 1ospO 257 2.05e+01 1ospO b.76.1.1 27971 2agaA 190 2.07e+01 1ub0A 258 2.09e+01 c.72.1.2 88394 1y60A 169 2.18e+01 2g0dA 409 2.22e+01 1tf1A 198 2.24e+01 d.110.2.2 106826 1xpkC 388 2.25e+01 2aeeA 211 2.28e+01 1chd 203 2.28e+01 1chd c.40.1.1 32478 1ukuA 102 2.29e+01 d.58.5.2 99533 1xb4A 202 2.30e+01 1nox 205 2.31e+01 1nox d.90.1.1 40242 1vhxA 150 2.32e+01 c.55.3.8 100712 1yzyA 413 2.34e+01 1t1vA 93 2.45e+01 c.47.1.14 106278 1wwkA 307 2.48e+01 2ci1A 275 2.52e+01 1lkdA 297 2.52e+01 d.32.1.3,d.32.1.3 78059,78060 1mzhA 225 2.57e+01 c.1.10.1 79698 1zmaA 118 2.61e+01 1ykjA 394 2.64e+01 8fabA 212 2.72e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1oz9A 150 2.74e+01 d.92.1.15 93808 1xewY 172 2.75e+01 1w8kA 447 2.79e+01 1fjgP 88 2.80e+01 1emwA d.27.1.1 38444 1h75A 81 2.82e+01 1h75A c.47.1.1 60716 2f1rA 171 2.88e+01 1nn5A 215 2.93e+01 c.37.1.1 85892 1rv9A 259 2.94e+01 d.194.1.2 105105 1itxA 419 2.94e+01 c.1.8.5,d.26.3.1 71425,71426 1ujcA 161 3.00e+01 2fqxA 318 3.04e+01 2fiqA 420 3.06e+01 1rz3A 201 3.11e+01 c.37.1.6 98132 1h6hA 143 3.14e+01 d.189.1.1 65681 1vq3A 94 3.22e+01 1ii5A 233 3.24e+01 c.94.1.1 62412 1kwgA 645 3.35e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1wd7A 261 3.38e+01 1w78A 422 3.39e+01 1y81A 138 3.42e+01 1vf8A 377 3.44e+01 1wycA 392 3.47e+01 1vixA 420 3.47e+01 c.56.5.4,d.58.19.1 100777,100778 2fwuA 157 3.54e+01 1xp8A 366 3.55e+01 1v54E 109 3.69e+01 a.118.11.1 100326 1wdyA 285 3.75e+01 1wy5A 317 3.79e+01 1ypqA 135 3.81e+01 1zt2B 212 3.82e+01 1x6vA 630 3.85e+01 1e12A 253 3.88e+01 1c3wA f.13.1.1 43428 1eemA 241 3.89e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1ve4A 206 3.90e+01 1pytA 94 3.93e+01 1pytA d.58.3.1 39064 1cmcA 104 4.03e+01 1cmbA a.43.1.5 17462 2ethA 154 4.04e+01 1v0lA 313 4.07e+01 c.1.8.3 108207 1lj9A 144 4.08e+01 a.4.5.28 78035 1x54A 434 4.13e+01 1kamA 194 4.15e+01 c.26.1.3 72254 1ynfA 458 4.17e+01 1fonA 240 4.21e+01 5ptp b.47.1.2 26231 2f1kA 279 4.23e+01 1jbwA 428 4.29e+01 c.59.1.2,c.72.2.2 62860,62861 1wu7A 434 4.31e+01 1u11A 182 4.39e+01 c.23.8.1 107576 1srqA 341 4.41e+01 e.55.1.1 105967 1vpkA 378 4.41e+01 2gqrA 237 4.44e+01 1g2iA 166 4.44e+01 1g2iA c.23.16.2 31438 1z3eA 132 4.45e+01 1m40A 263 4.51e+01 e.3.1.1 74437 1w1hA 151 4.54e+01 1k1eA 180 4.57e+01 c.108.1.5 67995 1k4nA 192 4.62e+01 d.32.1.5 72059 1xcbA 211 4.66e+01 a.4.5.38,c.2.1.12 109552,109553 2d5cA 263 4.68e+01 1nwzA 125 4.71e+01 d.110.3.1 86370 1k0iA 394 4.73e+01 c.3.1.2,d.16.1.2 67942,67943 1q9uA 130 4.74e+01 d.129.7.1 96314 1ycdA 243 4.76e+01 1nm2A 317 4.81e+01 c.19.1.1,d.58.23.1 80654,80655 1zgkA 308 4.82e+01 1v8cA 168 4.87e+01 d.15.3.1,d.129.5.1 100495,100496 1avoA 60 4.89e+01 1avoA a.24.8.1 16619 1o4sA 389 4.97e+01 c.67.1.1 86620 1z5yE 149 5.00e+01 1k7kA 221 5.00e+01 c.51.4.1 72104 1dq3A 454 5.01e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1lngA 87 5.05e+01 d.201.1.1 74045 2a8jA 420 5.09e+01 1o26A 232 5.14e+01 d.207.1.1 86566 2f5tX 233 5.35e+01 1s99A 200 5.39e+01 2a5hA 416 5.42e+01 1k8kF 168 5.43e+01 d.198.2.1 68312 1rp4A 389 5.53e+01 a.227.1.1 105027 2bwnA 401 5.54e+01 1idrA 136 5.56e+01 1dlyA a.1.1.1 62301 1ga8A 311 5.57e+01 1ga8A c.68.1.4 34516 1xfiA 367 5.57e+01 e.50.1.1 109584 2b0cA 206 5.61e+01 1mp1A 111 5.61e+01 a.188.1.1 91382 1iqzA 81 5.63e+01 d.58.1.4 66281 1rf6A 427 5.64e+01 d.68.2.2 97366 1lfwA 470 5.66e+01 c.56.5.4,d.58.19.1 77942,77943 1whbA 157 5.68e+01 1njrA 284 5.72e+01 c.50.1.2 103858 1efyA 350 5.76e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1bywA 110 5.80e+01 1bywA d.110.3.6 40912 1t0aA 159 5.85e+01 1j6wA 175 5.94e+01 1j98A d.185.1.2 62663 1gz2A 142 5.96e+01 d.169.1.1 83392 1m5wA 243 5.96e+01 c.1.24.1 84836 2f6rA 281 5.99e+01 1yspA 181 6.02e+01 2f91A 237 6.04e+01 1xviA 275 6.04e+01 1xiyA 182 6.08e+01 1mixA 206 6.18e+01 a.11.2.1,b.55.1.5 79166,79167 1io0A 185 6.18e+01 c.10.1.1 76753 1q1oA 98 6.19e+01 d.15.2.2 95596 1bsg 266 6.20e+01 1btl e.3.1.1 42729 2cbzA 237 6.21e+01 2cveA 191 6.29e+01 1p99A 295 6.30e+01 c.94.1.1 94384 1fvuB 125 6.36e+01 1ixxB d.169.1.1 42346 1h1yA 228 6.36e+01 c.1.2.2 76506 1eq2A 310 6.37e+01 1eq2A c.2.1.2 29814 1wddS 128 6.42e+01 1ivnA 190 6.43e+01 c.23.10.5 83719 1l3iA 192 6.50e+01 c.66.1.22 77676 1o2dA 371 6.51e+01 e.22.1.2 86591 1n82A 331 6.52e+01 c.1.8.3 91703 1jcfA 344 6.56e+01 c.55.1.1,c.55.1.1 62878,62879 1w85A 368 6.60e+01 1gudA 288 6.66e+01 c.93.1.1 83326 2mltA 27 6.67e+01 j.19.1.1 46171 1vpqA 273 6.73e+01 1mfmA 153 6.76e+01 1mfmA b.1.8.1 22246 1jofA 365 6.80e+01 b.69.10.1 71775 1gca 309 6.83e+01 1gca c.93.1.1 35659 1tjyA 316 6.85e+01 c.93.1.1 107062 1nrwA 288 6.85e+01 c.108.1.10 86128 2fs2A 151 6.89e+01 1zk7A 467 7.05e+01 1ct5A 256 7.07e+01 1ct5A c.1.6.2 28663 1w3oA 216 7.07e+01 1y0hA 105 7.10e+01 1iow 306 7.12e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1gdvA 85 7.16e+01 1ctj a.3.1.1 60458 1yzhA 214 7.17e+01 16vpA 366 7.23e+01 16vpA d.180.1.1 42601 1f1xA 322 7.25e+01 d.32.1.3,d.32.1.3 83208,83209 1v5mA 136 7.26e+01 b.55.1.1 108379 1zl8B 54 7.30e+01 1e4yA 214 7.31e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1k0eA 453 7.38e+01 d.161.1.1 67938 1y1oA 203 7.39e+01 1bg4 302 7.44e+01 1taxA c.1.8.3 28806 1gx1A 160 7.53e+01 d.79.5.1 70675 1qtnA 164 7.55e+01 1pauA c.17.1.1 30999 2gnpA 266 7.56e+01 1vmaA 306 7.68e+01 a.24.13.1,c.37.1.10 108887,108888 1reqB 637 7.69e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1v84A 253 7.71e+01 c.68.1.7 108419 1v92A 46 7.72e+01 a.5.2.3 100531 1apyA 162 7.72e+01 1apyA d.153.1.5 42004 1i5gA 144 7.86e+01 1ewxA c.47.1.10 61784 1e3dA 266 7.86e+01 2frvA e.19.1.1 59188 1vp2A 208 7.87e+01 1fkqA 124 7.88e+01 3lzt d.2.1.2 36601 1lc5A 364 7.95e+01 c.67.1.1 73827 2fb1A 226 7.96e+01 1y5eA 169 7.97e+01 1c7qA 445 8.10e+01 2pgi c.80.1.2 35307 1wzaA 488 8.15e+01 1bob 320 8.21e+01 1bob d.108.1.1 40816 2b82A 211 8.22e+01 1bif 469 8.22e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1rmwA 212 8.25e+01 1vfjA 116 8.31e+01 1v8fA 276 8.32e+01 c.26.1.4 100503 1tvlA 454 8.38e+01 c.1.16.4 107366 1w27A 714 8.40e+01 7taa 478 8.42e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1n0qA 93 8.43e+01 k.37.1.1 79754 1vd6A 224 8.54e+01 1z0wA 207 8.57e+01 1wkrA 340 8.58e+01 b.50.1.2 109395 1zz1A 369 8.59e+01 1wb0A 445 8.60e+01 1ufkA 254 8.69e+01 c.66.1.39 99340 2ptd 298 8.70e+01 2plc c.1.18.2 29605 2bkxA 242 8.72e+01 1ss9A 311 8.73e+01 c.68.1.4 105978 1q1aA 289 8.74e+01 c.31.1.5 95561 1z7lA 276 8.76e+01 1xn7A 78 8.90e+01 1a7s 221 8.93e+01 1a7s b.47.1.2 26284