# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zhvA 134 1.67e-02 2g0dA 409 1.72e-01 1g61A 228 1.95e-01 1g61A d.126.1.1 41126 2fe7A 166 3.79e-01 1umnA 165 4.64e-01 a.25.1.1 99607 1dzkA 157 8.19e-01 1obpA b.60.1.1 27096 1tl9A 339 9.16e-01 1ccwA 137 9.55e-01 1be1 c.23.6.1 31238 1v6sA 390 1.09e+00 c.86.1.1 100424 1yj7A 171 1.89e+00 1sgwA 214 2.13e+00 c.37.1.12 105541 1f7zA 233 3.64e+00 5ptp b.47.1.2 59681 1o1xA 155 4.62e+00 c.121.1.1 86553 1jbeA 128 5.02e+00 3chy c.23.1.1 62845 1bsg 266 5.10e+00 1btl e.3.1.1 42729 1u9cA 224 5.24e+00 1vcsA 102 5.95e+00 2f06A 144 5.97e+00 2f4nA 273 6.17e+00 1dpo 223 6.45e+00 5ptp b.47.1.2 25975 1wdyA 285 6.46e+00 1v2xA 194 6.59e+00 c.116.1.1 100274 1wyzA 242 6.67e+00 1kwmA 402 6.81e+00 c.56.5.1,d.58.3.1 73079,73080 2fb1A 226 7.09e+00 1gnkA 112 7.23e+00 2pii d.58.5.1 39073 1mp1A 111 7.34e+00 a.188.1.1 91382 1vggA 161 7.36e+00 2atzA 180 7.63e+00 2a9sA 171 7.64e+00 1oxkB 134 7.70e+00 c.23.1.1 93691 1pba 81 8.13e+00 1pytA d.58.3.1 39067 1vjqA 79 8.22e+00 k.43.1.1 100830 1fjgP 88 8.40e+00 1emwA d.27.1.1 38444 1ti6B 274 8.62e+00 b.3.5.1,d.58.1.5 106976,106977 1yqgA 263 8.76e+00 1r1qA 100 9.71e+00 d.93.1.1 104763 1euwA 152 1.09e+01 1dupA b.85.4.1 28349 1lngA 87 1.17e+01 d.201.1.1 74045 1s69A 124 1.19e+01 a.1.1.1 105305 1f2tB 148 1.19e+01 1f2tB 2gk9A 426 1.23e+01 1rypL 212 1.32e+01 d.153.1.4 41880 1lrv 244 1.35e+01 1lrv a.118.1.5 19146 1q2lA 939 1.36e+01 1p90A 145 1.40e+01 c.55.5.2 94377 1s83A 223 1.42e+01 b.47.1.2 98718 1hxvA 113 1.42e+01 d.26.1.1 71089 2gq1A 332 1.44e+01 1jmsA 381 1.44e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1jetA 517 1.49e+01 1jevA c.94.1.1 35718 1u5hA 273 1.50e+01 1ewsA 32 1.51e+01 1ewsA g.9.1.1 59534 1h9hE 223 1.51e+01 b.47.1.2 103810 1q1oA 98 1.52e+01 d.15.2.2 95596 1fecA 490 1.55e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1idrA 136 1.62e+01 1dlyA a.1.1.1 62301 1wwpA 119 1.64e+01 1yqhA 109 1.67e+01 1eyhA 144 1.72e+01 1eduA a.118.9.1 19214 1iqzA 81 1.79e+01 d.58.1.4 66281 1jd1A 129 1.79e+01 1qu9A d.79.1.1 62890 1gadO 330 1.83e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1cmcA 104 1.88e+01 1cmbA a.43.1.5 17462 1fp2A 352 1.91e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1j93A 353 1.93e+01 c.1.22.1 66454 1bjaA 95 2.05e+01 1bjaA a.4.5.9 16122 1rz4A 226 2.14e+01 a.4.5.53,a.118.1.18 105131,105132 1ctf 74 2.20e+01 1ctf d.45.1.1 38759 1yzhA 214 2.21e+01 1tjyA 316 2.22e+01 c.93.1.1 107062 2g03A 194 2.37e+01 1yqzA 438 2.38e+01 1gd0A 122 2.43e+01 1dptA d.80.1.3 39834 1wwkA 307 2.45e+01 2d1uA 104 2.50e+01 1w2tA 432 2.51e+01 1f5qB 252 2.52e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 2b2nA 344 2.54e+01 1xcbA 211 2.58e+01 a.4.5.38,c.2.1.12 109552,109553 1obbA 480 2.58e+01 c.2.1.5,d.162.1.2 86760,86761 1d2vC 466 2.63e+01 1mhlC 1v92A 46 2.63e+01 a.5.2.3 100531 1uypA 432 2.68e+01 b.29.1.19,b.67.2.3 100176,100177 1kjwA 295 2.72e+01 b.34.2.1,c.37.1.1 68643,68644 1zvpA 133 2.74e+01 1zl8B 54 2.78e+01 1j7xA 302 2.78e+01 c.14.1.2 66425 1h4wA 224 2.78e+01 b.47.1.2 65622 1vp2A 208 2.78e+01 1k4nA 192 2.79e+01 d.32.1.5 72059 1m7vA 363 2.91e+01 d.174.1.1 78748 1pjr 724 3.00e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1qzzA 374 3.05e+01 a.4.5.29,c.66.1.12 96719,96720 1whzA 70 3.06e+01 1guxB 152 3.06e+01 1guxB a.74.1.3 18389 1ul7A 102 3.11e+01 d.129.6.1 99540 2g7iA 125 3.13e+01 1dpe 507 3.22e+01 1dpe c.94.1.1 35799 1x54A 434 3.23e+01 1t1vA 93 3.27e+01 c.47.1.14 106278 1ryaA 160 3.49e+01 d.113.1.5 105122 1ub9A 100 3.49e+01 a.4.5.28 99159 2g76A 335 3.49e+01 1vqoB 338 3.50e+01 2b1yA 104 3.52e+01 1xqaA 113 3.57e+01 1u5kA 244 3.59e+01 2fq4A 192 3.63e+01 1adt 356 3.65e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1gt1A 159 3.66e+01 b.60.1.1 90515 1vr5A 547 3.68e+01 1bvoA 175 3.89e+01 1a3qA b.2.5.3 22457 1fonA 240 3.93e+01 5ptp b.47.1.2 26231 1mwqA 101 4.04e+01 d.58.4.7 91481 1l3iA 192 4.19e+01 c.66.1.22 77676 1wi6A 88 4.25e+01 1yg2A 179 4.28e+01 1tedA 393 4.29e+01 c.95.1.2 106807 1umhA 184 4.40e+01 b.18.1.21 99605 1ngr 85 4.41e+01 1ngr a.77.1.2 18422 1ys7A 233 4.43e+01 1s7zA 117 4.45e+01 a.159.3.1 98715 1sedA 117 4.62e+01 a.219.1.1 105449 1xocA 520 4.65e+01 2c3nA 247 4.75e+01 1meoA 209 4.76e+01 c.65.1.1 79035 1zkkA 167 4.81e+01 1s2wA 295 4.82e+01 c.1.12.7 98407 1f7uA 607 4.86e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1o2dA 371 4.91e+01 e.22.1.2 86591 1nm2A 317 4.92e+01 c.19.1.1,d.58.23.1 80654,80655 1ds1A 324 4.93e+01 1drtA b.82.2.2 28127 1ysrA 150 4.93e+01 2f94F 350 4.94e+01 2cvlA 124 5.04e+01 1v5mA 136 5.04e+01 b.55.1.1 108379 1rsoA 60 5.17e+01 a.194.1.1 97811 2cbzA 237 5.27e+01 1ospO 257 5.31e+01 1ospO b.76.1.1 27971 1s3zA 165 5.43e+01 d.108.1.1 105250 1wcwA 261 5.44e+01 1x46A 150 5.46e+01 2aqjA 538 5.54e+01 1lf7A 182 5.56e+01 b.60.1.1 73878 2d4pA 141 5.59e+01 1yrcA 414 5.61e+01 1qo7A 394 5.63e+01 1qo7A c.69.1.11 34697 1u5vA 273 5.69e+01 1io0A 185 5.72e+01 c.10.1.1 76753 1ycdA 243 5.79e+01 1n97A 389 5.79e+01 a.104.1.1 80335 1xknA 355 5.82e+01 1tif 78 6.03e+01 1tif d.15.8.1 37836 1j09A 468 6.05e+01 a.97.1.1,c.26.1.1 77025,77026 1bqsA 209 6.07e+01 1bqsA b.1.1.4,b.1.1.4 21704,21705 1dz3A 130 6.16e+01 1dz3A c.23.1.1 31105 1gp6A 356 6.23e+01 b.82.2.1 65441 1tz9A 367 6.24e+01 c.1.15.6 107466 1whsA 255 6.35e+01 1ivyA c.69.1.5 34649 1m5wA 243 6.37e+01 c.1.24.1 84836 2al6A 375 6.44e+01 1bed 181 6.44e+01 1fvkA c.47.1.13 90330 1tbxA 99 6.47e+01 a.4.5.48 106748 1yi8A 351 6.57e+01 1r4gA 53 6.60e+01 a.8.5.1 96996 1ogiA 303 6.68e+01 b.43.4.2,c.25.1.1 92914,92915 1zlqA 502 6.73e+01 1s98A 107 6.73e+01 b.124.1.1 105377 1gpjA 404 6.73e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1ugmA 125 6.87e+01 d.15.1.3 107827 1avqA 228 6.91e+01 1avqA c.52.1.13 33326 1myn 44 6.93e+01 1gpt g.3.7.4 44172 2avyM 117 6.93e+01 1dlyA 164 6.97e+01 1dlyA a.1.1.1 14983 1sbxA 106 7.03e+01 a.6.1.4 105414 2dcnA 311 7.08e+01 1v8fA 276 7.15e+01 c.26.1.4 100503 2ex4A 241 7.23e+01 1c1kA 217 7.31e+01 1c1kA a.120.1.1 19239 1gh9A 71 7.34e+01 1gh9A g.41.6.1 45266 1y5eA 169 7.34e+01 1x0rA 249 7.35e+01 1r6xA 395 7.40e+01 b.122.1.3,c.26.1.5 97167,97168 1wd7A 261 7.41e+01 1ka2A 499 7.50e+01 d.92.1.5 77305 1oaiA 59 7.51e+01 a.5.2.3 81255 1y6xA 93 7.51e+01 1fkqA 124 7.54e+01 3lzt d.2.1.2 36601 2gzqA 200 7.58e+01 1in0A 163 7.66e+01 d.58.49.1,d.58.49.1 83694,83695 1gsmA 210 7.67e+01 b.1.1.4,b.1.1.4 65535,65536 1vcc 77 7.73e+01 1vcc d.121.1.1 41092 1yrrA 382 7.77e+01 1vj1A 363 7.80e+01 b.35.1.2,c.2.1.1 100794,100795 2c60A 111 7.96e+01 2b59B 172 8.02e+01 2ab0A 205 8.11e+01 1m70A 190 8.28e+01 a.3.1.4,a.3.1.4 91200,91201 1zv1A 65 8.41e+01 1ylmA 144 8.44e+01 1pjcA 361 8.53e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1iow 306 8.58e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1fmjA 351 8.90e+01 c.37.1.5 59879 1nf2A 268 8.90e+01 c.108.1.10 91849