(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0349 PaT90, Pseudomonas Aeruginosa, 75 res
                   10        20        30          40        50        
                   |         |         |           |         |        
   1 ...M..RELLRTNDAVLLSAVGALLDGADIGHLVLD.QNMS.ILEGSLGVIPRRVLVHEDDLAGA
   2 ...M..RELVRTNDVVLISAVGALLDGAEIHYLVMD.QNMS.ILEGSVGVIPRRVLVHPDDLRSA
   3 ...M..RELVRTNDVVLISAIGALMDGAQIHYLVMD.QNMS.ILEGSVGVIPRRVLVHPDDLSSA
   4 ...M..KELLRTTDPTIIAFASALLQGEDIDCFPLD.VNMS.VLEGGIGIFPRRLMVHDDDHSAA
   5 ...M..RELVRTNDMVLVSAIGALLDGANIHHLVLD.QNMS.IIEGSLGILPRRILVHEDDAQEA
   6 ...M..KELVRTNDIVLVSAVGALLDGADIHHLVLD.QNMS.IIEGSLGILPRRILVHEDDNLQA
   7 ...M..KELLRTTDPTIIAFASALLQGEDIDCFPLD.VNMS.VLEGGIGIFPRRLMVHDDDHTAA
   8 ...M..RELVRTNDIVLLSAIGALLDGGRIHYLVLD.QNMS.VIEGSVGVLPRRLLVHDDDITTA
   9 ...M..RELLRTNDAVLLSAVGALLDGADIGHLVLD.QNMS.ILEGSLGVIPRRVLVHEDDLAGA
  10 ...M..KELLRSTDPTVLAFASALLEGEDIDCFQMD.VNMS.ILEGGIGIFPRRLMVRDEDYSQA
  11 ...M..IELIRTNDSVLLSFAEALMKEAGIAYFIAD.TNMS.IIEGSLGVLPRRLMVDEDQMEEA
  12 ...M..KELLRTTDPTIIAFATALLQGEDIDAFPVD.VHMS.VLEGSIGILPRRLFVPEEDWDRA
  13 garL..RELVRTNDVVLISAIGALMDGAQIHYLVMD.QNMS.ILEGSVGVIPRRVLVHPDDLSSA
  14 ...M..RELVRTNDVVLVSAIGALLDAARIHHLVLD.QNMS.VIEGSVGVIPRRILVHDDDNQEA
  15 ...M..KELLRTTDPTIIAFASALLSGEGIPAFPMD.VHMS.TLEGSIGILPRRLMVRADDYVRA
  16 ...M..RELVRTNDLVLVSAIGALLDGAGIFYLVLD.QNMS.VIEGSLGVLPRRILVNDDDNRAA
  17 ...M..KLLLRSTDPATIAFAQALLQGEGIDCFEMD.VNMS.VLEGGIGIFPRRLMVRERDHARA
  18 ...M..KELLRSTDPTVMAFASALLEGEDIDCFQMD.VNMS.ILEGGIGIFPRRMMVRDEDYDRA
  19 ...M..KELIRTNDAVLLSFAESLMKDAGIGCFIAD.QDMS.ILEGSLGLLPRRFLVAEDDADRA
  20 ...M..KELLRTNDVTVIAFATALLDAEGIDWFTFD.DNMS.IMEGSIGIMPRRLMVHDRDLFMA
  21 ...M..HELIRANDPVLLSYAESLMKDAGIHCFIAD.QGMS.VLEGSLGMLPRRLLVDEEMADQA
  22 md.M..KELLRSTDPTVLAFATALLNGEGIDCFEMD.VNMS.VLEGGIGIFPRRLLVHADDLEDA
  23 ...M..KQLMRTNNPADMAFAQALLQGEGIDWFEMD.VNMS.VLEGSIGILPRRLMVKSEDHDRA
  24 sgrM..IELIRTNDSVLLSFAEALMKEAGIAYFIAD.TNMS.IIEGSLGVLPRRLMVDEDQMEEA
  25 ...M..KQLLRTNDIASIAFAQALLQGEGIDCFEMD.VNMS.ILEGSIGIFPRRLMVATADYEEA
  26 ...M..KELLRSTDPTVIAFAKALLGGEGIDCFEMD.VNMS.ILEGSIGILPRRLMVRTDDHTAA
  27 ...M..IELIRTNDAVALSFIESLLRDAGINYLIAD.QNMS.IMEGSLGVLPRRVLVAEDQADEA
  28 ...MtlQELVRTNDMVLVSAVGALLDGAGIFHLVLD.QNMS.VLEGSLGVLPRRVLVNDGDNRAA
  29 glsM..RELIRTNDAVLLSFAESLMKDAGIHCLIAD.QAMS.ILEGSLGLLPRRFLVEEDRAGEA
  30 ...M..HELVRTNDLVLIGAIEALFQSAQIGHMVAD.QYMS.VMEGTIGILPRRLLVVDEDVDRA
  31 ...M..LEILRSNDPTIIAFATALLRGEDIEVFEMD.VHMS.GLEGSIGILPRRLLVRRAEAAAA
  32 ...M..KELLRTTDPLLITRAADLLAAEGIQSFPLD.QHMS.VLEGSLGILPRRLMVADRDLFMA
  33 ...M..AELVRTNDPVAISVVEGLLTSAEIPYEVAD.RNMS.VLDGLIEVIKVRILVPDERAADA
  34 ...M..IEVLATNDPVKLSFAQAVLKEAGIEAVTLDeQTAS.TFGGALPWIKRRILVREQDRDRA
  35 ...M..VELVSTDDPVLLSWLMAQLADAEIGAVVFD.SHTTaLLPGTLGLIQSRVMVGDDDLDAA


      60        70        
      |         |        
   1 RRLLTDAGLAHELRSDD...
   2 RQVLTDAGLAHELRGDD...
   3 RQVLTDAGLAHELRTDE...
   4 TRVLRDNDIPTGLPK--...
   5 RQLLTEAGLSHELRGDD...
   6 RRLLTDAGLGHELRPDE...
   7 TRVLLDNDIPTGLPK--...
   8 RQILTDAGLGHELRSDV...
   9 RRLLTDAGLAHELRSDD...
  10 KRAMVDNEIPLGNET--...
  11 RQILIDAKIEHELRDNK...
  12 CRVMSDNGIPTTP----...
  13 RQVLTDAGLAHELRTDE...
  14 RQLLTEAGLAHELRADV...
  15 RRVLTENGIELEEE---...
  16 RQLLIEAGLAHELRPDDrrp
  17 ERALQDNGIATDG----...
  18 LRVVTDNDIPLGR----...
  19 RRILIDAGLELELRQ--...
  20 EAVMRDGEIDLGRG---...
  21 RRILIDAGLGGELRDRT...
  22 RVVMRDNDLPVSDRG--...
  23 ATVMKDNGFDLEA----...
  24 RQILIDAKIEHELRDNK...
  25 RTTLIDNGFSLED----...
  26 LRVCRDNDIDLGL----...
  27 RQILGDAGL-MEIGRKE...
  28 RRLLAEAGLAHELRPDDadd
  29 RRILVDAGLGDELRNEEa..
  30 RRLLKEAGFGAALRDGT...
  31 EVVLRDNELPVSEWN--...
  32 RAILRDNRIHHD-----...
  33 RELMAEAELGDWLSG--...
  34 KALLAEA-LKD------...
  35 RRILAQAGATP------...