PFRMAT RR
TARGET T0349
AUTHOR 5370-1100-4902
REMARK From group SAM-TO6 under the direction of
REMARK Kevin Karplus.
REMARK Residue-residue contact predictions
REMARK  by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network.
METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net
METHOD Inputs may include separation and sequence length,
METHOD e-value statistic based on mutual information values,
METHOD a statistic based on propensity of residues in contact.
METHOD Other inputs are distributions from alignments and
METHOD secondary predictions from SAM-t04 and/or SAM-t06 of
METHOD the University of California, Santa Cruz
MODEL 1
MRELLRTNDAVLLSAVGALLDGADIGHLVLDQNMSILEGSLGVIPRRVLV
HEDDLAGARRLLTDAGLAHELRSDD
3 12 0 8 0.0255407299364
3 13 0 8 0.0321539331589
3 25 0 8 0.0193489234819
3 47 0 8 0.0194083887661
3 50 0 8 0.0199214882891
3 58 0 8 0.0207560191433
4 13 0 8 0.0420320016909
4 14 0 8 0.0296470875721
4 15 0 8 0.0327758463448
4 16 0 8 0.0319709180118
4 18 0 8 0.0310779953714
4 19 0 8 0.0405577310777
4 25 0 8 0.0338132357944
4 28 0 8 0.0197424743618
4 30 0 8 0.0229055200107
4 31 0 8 0.0196785199041
4 34 0 8 0.0270280451771
4 36 0 8 0.0312195344587
4 37 0 8 0.0210162285571
4 42 0 8 0.0230531747837
4 43 0 8 0.0231320931532
4 44 0 8 0.0212149232815
4 46 0 8 0.0193450849132
4 47 0 8 0.0354456033886
4 48 0 8 0.0303058900535
4 49 0 8 0.05113461429
4 50 0 8 0.0363740165241
4 58 0 8 0.0406566230164
4 61 0 8 0.0248860587959
4 62 0 8 0.0205552424834
4 71 0 8 0.0198062661684
5 14 0 8 0.0478259632734
5 15 0 8 0.05746369837
5 16 0 8 0.0600075633734
5 17 0 8 0.035846701285
5 18 0 8 0.0436565620268
5 19 0 8 0.0376924672733
5 20 0 8 0.0337553319618
5 23 0 8 0.0211489519486
5 25 0 8 0.0377464674767
5 27 0 8 0.020436311915
5 28 0 8 0.0308189895765
5 29 0 8 0.0347985768552
5 30 0 8 0.0450999289092
5 34 0 8 0.0223477889943
5 36 0 8 0.020607518584
5 37 0 8 0.0239248226452
5 41 0 8 0.0206873152701
5 43 0 8 0.022525794484
5 44 0 8 0.0260410125437
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5 47 0 8 0.0342097794567
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5 50 0 8 0.0328412321333
5 51 0 8 0.025525278071
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5 61 0 8 0.0341622853019
5 62 0 8 0.0271759927223
6 15 0 8 0.0288205591577
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6 18 0 8 0.0207498383971
6 19 0 8 0.0459144861941
6 25 0 8 0.0282716113069
6 28 0 8 0.0202793860227
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6 35 0 8 0.0197360984342
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7 25 0 8 0.0387532784979
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7 35 0 8 0.0183527823805
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9 18 0 8 0.0346336485231
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9 39 0 8 0.0212442655606
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END