Best Alignments for T0348

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2ct7A/T0348-2ct7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ct7A/T0348-2ct7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2942e-017.37e-06
1pft/T0348-1pft-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pft/T0348-1pft-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2665e-011.13e-06 1pft g.41.3.1
1vk6A/T0348-1vk6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk6A/T0348-1vk6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3135e-017.80e-06 d.113.1.4
d.113.1.4
1vqoZ/T0348-1vqoZ-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vqoZ/T0348-1vqoZ-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1199e+006.52e-05
1vckA/T0348-1vckA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vckA/T0348-1vckA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8958e+001.69e-04
1odhA/T0348-1odhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1odhA/T0348-1odhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6588e+002.70e-02 d.239.1.1
1vd4A/T0348-1vd4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vd4A/T0348-1vd4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8800e+003.62e-03
1s72Z/T0348-1s72Z-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s72Z/T0348-1s72Z-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0939e+003.21e-05 g.41.8.1
1ee8A/T0348-1ee8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ee8A/T0348-1ee8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6005e+001.25e-02 1ee8A a.156.1.2
b.113.1.1
g.39.1.8
1ypvA/T0348-1ypvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ypvA/T0348-1ypvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4135e+001.79e-02

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001