# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ct7A 86 1.30e-01 1vd4A 62 4.57e-01 2fqpA 97 5.30e-01 1vckA 115 5.93e-01 1ur6B 52 6.53e-01 g.44.1.1 99812 1rlyA 60 9.86e-01 g.41.3.1 104988 1odhA 174 9.97e-01 d.239.1.1 86850 1vqoZ 83 1.00e+00 1tr9A 341 1.22e+00 1vk6A 269 1.41e+00 d.113.1.4,d.113.1.4 100851,100852 830cA 168 1.65e+00 1ck7A d.92.1.11 40400 2a8jA 420 1.84e+00 1rutX 188 1.84e+00 2a1rA 430 2.00e+00 1lm5A 214 2.48e+00 d.211.2.1 74029 2g8oA 264 2.98e+00 1kmtA 141 3.30e+00 b.1.18.8 77442 2g8mA 264 3.41e+00 1ee8A 266 3.43e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1l1oC 181 3.45e+00 b.40.4.3 73480 1lv3A 68 3.45e+00 g.39.1.9 78231 1ww8A 439 3.61e+00 2a20A 62 3.77e+00 1us5A 314 3.92e+00 c.94.1.1 99856 1vq0A 302 3.97e+00 1wd2A 60 4.15e+00 g.44.1.1 109232 1qqqA 264 4.17e+00 1bkpA d.117.1.1 40931 1z6uA 150 4.34e+00 1y88A 199 4.50e+00 1d0qA 103 4.57e+00 1d0qA g.41.3.2 45208 1z60A 59 4.78e+00 1fiqB 350 4.79e+00 1fiqB d.87.2.1,d.145.1.3 40229,41760 1i76A 163 4.84e+00 1hfc d.92.1.11 61877 1dgfA 497 5.88e+00 1cf9A e.5.1.1 42782 1ywzA 175 5.92e+00 1poc 134 5.96e+00 1poc a.133.1.1 19513 1l8dA 112 6.44e+00 h.4.12.1 73687 1qxfA 66 6.70e+00 g.41.8.4 96527 1ypvA 313 6.71e+00 2bwfA 77 7.15e+00 1ejxA 100 7.47e+00 d.8.1.1 83182 1wfeA 86 7.68e+00 1fl2A 310 7.95e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 1vzyA 291 8.56e+00 1yk4A 52 8.66e+00 1afp 51 8.69e+00 1afp g.26.1.1 44947 1oapA 109 9.16e+00 d.79.7.1 92706 1jm1A 204 9.73e+00 b.33.1.1 71745 2fvhA 120 9.92e+00 1xd3A 230 1.02e+01 1wijA 140 1.06e+01 1erd 40 1.09e+01 1erd a.10.1.1 16362 1rb9 53 1.09e+01 1rb9 g.41.5.1 45214 1a7i 81 1.13e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1m1qA 91 1.17e+01 a.138.1.3 74419 1ifqA 138 1.22e+01 1ifqA d.110.4.1 62350 2aq4A 434 1.30e+01 1w0uA 55 1.31e+01 1u79A 129 1.34e+01 d.26.1.1 107714 4ubpA 101 1.37e+01 1ubpA d.8.1.1 37352 1mr1C 99 1.38e+01 d.217.1.2 79420 2airB 153 1.39e+01 1ptq 50 1.39e+01 1ptq g.49.1.1 45349 1fiuA 286 1.40e+01 1fiuA c.52.1.10 33317 1z1zA 131 1.41e+01 1hdlA 55 1.53e+01 g.68.1.2 65808 1o12A 376 1.56e+01 b.92.1.5,c.1.9.10 80758,80759 1w33A 181 1.60e+01 1pkhA 204 1.70e+01 b.85.4.1 94832 1wjvA 79 1.71e+01 1x31D 99 1.73e+01 1twfL 70 1.75e+01 1mea 28 1.77e+01 g.41.1.1 45176 2sak 121 1.82e+01 2sak d.15.5.1 37711 2gatA 66 1.86e+01 1gatA g.39.1.1 45102 1kdj 102 1.86e+01 1plc b.6.1.1 22864 1wjpA 107 1.97e+01 1rdg 53 1.98e+01 1rb9 g.41.5.1 45221 1dxgA 36 2.03e+01 1dxgA g.41.5.2 45247 1w27A 714 2.11e+01 1x75A 132 2.26e+01 2bx9A 53 2.29e+01 1zsqA 528 2.31e+01 1ayoA 130 2.32e+01 1ayoA b.2.4.1 22431 1iro 54 2.34e+01 1rb9 g.41.5.1 45223 1yc5A 246 2.44e+01 1t0bA 252 2.50e+01 c.23.16.6 106199 2fe5A 94 2.52e+01 1t1jA 125 2.57e+01 c.137.1.1 106249 2avuE 192 2.60e+01 1qpaA 345 2.63e+01 1arv a.93.1.1 18585 1nigA 152 2.65e+01 a.25.2.1 85740 1weoA 93 2.75e+01 2ezvA 269 2.75e+01 1sur 215 2.78e+01 1sur c.26.2.2 31620 1q35A 320 2.79e+01 c.94.1.1 95661 1p32A 209 2.80e+01 1p32A d.25.1.1 38379 1qz5A 375 2.86e+01 c.55.1.1,c.55.1.1 96614,96615 2d1uA 104 2.96e+01 1uufA 369 2.97e+01 b.35.1.2,c.2.1.1 100006,100007 1rfs 139 3.07e+01 1rfs b.33.1.1 24434 1bs0A 384 3.13e+01 1bs0A c.67.1.4 34490 1erjA 393 3.26e+01 1erjA b.69.4.1 27660 1bfg 146 3.51e+01 1bfg b.42.1.1 25485 1xakA 83 3.57e+01 1gqpA 221 3.65e+01 b.18.1.9 70372 2fxuA 375 3.68e+01 1xiwA 105 3.73e+01 1xtqA 177 3.78e+01 1jjzA 29 3.80e+01 g.3.3.1 71699 1a78A 134 3.82e+01 1c1lA b.29.1.3 24212 1yopA 83 3.92e+01 1p5vA 235 4.00e+01 b.1.11.1,b.7.2.1 87812,87813 2fqaA 27 4.24e+01 1gmxA 108 4.25e+01 c.46.1.3 65355 2d1pB 119 4.36e+01 2cklB 165 4.46e+01 2hrvA 142 4.65e+01 2hrvA b.47.1.4 26429 1ku1A 230 4.70e+01 a.118.3.1 72996 1o7sA 127 4.75e+01 b.1.1.1 86644 2ct5A 73 4.76e+01 1ek9A 428 4.81e+01 1ek9A f.5.1.1 43809 1zu1A 127 4.91e+01 1vr0A 247 4.95e+01 2cklA 108 5.07e+01 1inp 400 5.24e+01 1inp e.7.1.1 42972 6rxn 46 5.33e+01 1rb9 g.41.5.1 45222 1h4rA 314 5.34e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2ac3A 316 5.37e+01 1pieA 419 5.47e+01 d.14.1.5,d.58.26.7 94706,94707 1k8kA 418 5.54e+01 c.55.1.1,c.55.1.1 68305,68306 1aihA 170 5.57e+01 1aihA d.163.1.1 42149 2b5iD 217 5.62e+01 1hq0A 295 5.90e+01 1hzgA d.194.1.1 61122 2c1xA 456 5.97e+01 1m0gA 30 5.99e+01 g.46.1.1 84743 2fy6A 143 6.08e+01 1nkoA 132 6.27e+01 b.1.1.1 85829 1jfrA 262 6.34e+01 1jfrA c.69.1.16 34724 1w2lA 99 6.46e+01 1reqA 727 6.47e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1wxiA 275 6.62e+01 2fiyA 309 6.64e+01 1xdfA 157 6.65e+01 1ovxA 67 6.69e+01 g.39.1.11 93622 1cy5A 97 6.71e+01 1cy5A a.77.1.3 18430 1v32A 101 6.75e+01 a.42.1.1 100277 1fs1A 53 6.77e+01 1fqvA a.158.1.1 19250 1mswD 883 6.79e+01 e.8.1.3 79427 2ctdA 96 6.82e+01 1dxsA 80 6.83e+01 1cokA a.60.1.2 17944 1ww9A 392 6.85e+01 1nv8A 284 6.88e+01 c.66.1.30 86224 2fk4A 75 6.90e+01 1v9kA 228 7.02e+01 d.265.1.3 108449 1cbs 137 7.05e+01 1hmt b.60.1.2 27201 2ct0A 74 7.24e+01 1q7lB 88 7.27e+01 1rmd 116 7.49e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 1vcsA 102 7.49e+01 2etxA 209 7.64e+01 1v7lA 163 7.67e+01 1zkkA 167 7.70e+01 1zyoA 191 7.96e+01 1z6mA 175 7.97e+01 2c36A 285 8.06e+01 1extA 162 8.32e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1hxiA 121 8.43e+01 1hxiA a.118.8.1 61366 1ua4A 455 8.53e+01 c.72.1.3 99128 1wwuA 99 8.81e+01 1je0A 236 8.85e+01 c.56.2.1 66581 1shuX 182 8.88e+01 c.62.1.1 98882 1nykA 165 8.89e+01 b.33.1.1 86408 1woyA 500 8.91e+01 1sz2A 332 8.96e+01 1ka8A 100 8.99e+01 a.4.5.20 72241