# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vqoZ 83 1.75e-01 2ct7A 86 2.50e-01 1odhA 174 1.03e+00 d.239.1.1 86850 1vk6A 269 1.41e+00 d.113.1.4,d.113.1.4 100851,100852 1vckA 115 1.44e+00 1rlyA 60 1.56e+00 g.41.3.1 104988 1ww8A 439 2.42e+00 1w9aA 147 2.61e+00 1qxfA 66 2.90e+00 g.41.8.4 96527 2aq6A 147 3.15e+00 1vd4A 62 3.59e+00 1ee8A 266 3.63e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1d0qA 103 4.11e+00 1d0qA g.41.3.2 45208 1y9wA 140 4.18e+00 1ypvA 313 4.51e+00 1ptq 50 4.85e+00 1ptq g.49.1.1 45349 1jm1A 204 5.13e+00 b.33.1.1 71745 1wd2A 60 5.28e+00 g.44.1.1 109232 2aq4A 434 5.44e+00 1ur6B 52 5.45e+00 g.44.1.1 99812 1yk4A 52 5.53e+00 1l1oC 181 6.02e+00 b.40.4.3 73480 2a1rA 430 6.78e+00 1neeA 138 7.55e+00 d.241.1.1,g.59.1.1 91841,91842 2a8jA 420 7.59e+00 1x75A 132 8.47e+00 830cA 168 8.49e+00 1ck7A d.92.1.11 40400 1mswD 883 8.81e+00 e.8.1.3 79427 1yovA 537 8.84e+00 1fp0A 88 9.31e+00 1fp0A g.50.1.2 45361 1i76A 163 1.01e+01 1hfc d.92.1.11 61877 1kmtA 141 1.13e+01 b.1.18.8 77442 1wijA 140 1.13e+01 1z4rA 168 1.15e+01 1tr9A 341 1.18e+01 2fqpA 97 1.24e+01 1wrvA 308 1.30e+01 1dxgA 36 1.37e+01 1dxgA g.41.5.2 45247 1rb9 53 1.46e+01 1rb9 g.41.5.1 45214 1p5vA 235 1.47e+01 b.1.11.1,b.7.2.1 87812,87813 1iro 54 1.57e+01 1rb9 g.41.5.1 45223 1qwtA 255 1.59e+01 b.26.1.3 96501 1rutX 188 1.70e+01 1r6lA 239 1.72e+01 d.14.1.4,d.101.1.1 97153,97154 2bx9A 53 1.73e+01 2g8yA 385 1.81e+01 1pfvA 551 1.83e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1dgfA 497 2.01e+01 1cf9A e.5.1.1 42782 1cojA 212 2.03e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1ywzA 175 2.09e+01 1m22A 503 2.18e+01 c.117.1.1 78464 1wfeA 86 2.22e+01 1t0bA 252 2.26e+01 c.23.16.6 106199 1utyA 187 2.28e+01 b.147.1.1 108036 2cklB 165 2.32e+01 2c1xA 456 2.33e+01 1qz5A 375 2.40e+01 c.55.1.1,c.55.1.1 96614,96615 2g8mA 264 2.42e+01 1qqqA 264 2.43e+01 1bkpA d.117.1.1 40931 1jx4A 352 2.47e+01 d.240.1.1,e.8.1.7 90378,90379 1rdg 53 2.47e+01 1rb9 g.41.5.1 45221 2aegA 268 2.50e+01 1dl0A 37 2.56e+01 1dl0A g.3.6.2 44112 1tz9A 367 2.57e+01 c.1.15.6 107466 1vq0A 302 2.62e+01 1jfrA 262 2.73e+01 1jfrA c.69.1.16 34724 1lm5A 214 3.05e+01 d.211.2.1 74029 1q35A 320 3.09e+01 c.94.1.1 95661 1brfA 53 3.16e+01 1rb9 g.41.5.1 45236 1l8dA 112 3.19e+01 h.4.12.1 73687 2sak 121 3.29e+01 2sak d.15.5.1 37711 2fxuA 375 3.30e+01 1r5mA 425 3.31e+01 1inp 400 3.50e+01 1inp e.7.1.1 42972 1mea 28 3.58e+01 g.41.1.1 45176 2g8oA 264 3.63e+01 2gatA 66 3.80e+01 1gatA g.39.1.1 45102 1wwcA 118 3.86e+01 1wwcA b.1.1.4 21778 1lv3A 68 3.86e+01 g.39.1.9 78231 1zzpA 130 3.88e+01 1yc5A 246 3.90e+01 2a20A 62 3.91e+01 2cklA 108 3.93e+01 1gpc 218 3.94e+01 1gpc b.40.4.7 25393 1hw5A 210 3.96e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1ys4A 354 4.11e+01 2cxkA 95 4.12e+01 1iyeA 309 4.13e+01 e.17.1.1 83786 1k7cA 233 4.19e+01 c.23.10.4 68267 2avuE 192 4.20e+01 1u8bA 133 4.21e+01 1z6uA 150 4.41e+01 1u79A 129 4.46e+01 d.26.1.1 107714 1ifqA 138 4.48e+01 1ifqA d.110.4.1 62350 2fqaA 27 4.52e+01 1wxiA 275 4.53e+01 1woyA 500 4.56e+01 2awpA 198 4.59e+01 1zsqA 528 4.70e+01 1v54F 98 4.70e+01 g.41.5.3 100327 1vekA 84 4.72e+01 4eugA 229 4.77e+01 3eugA c.18.1.1 31019 1jgsA 138 4.79e+01 a.4.5.28 66683 1a78A 134 4.84e+01 1c1lA b.29.1.3 24212 2cy5A 140 4.86e+01 1upiA 225 4.94e+01 b.82.1.1 99757 1mr1C 99 5.06e+01 d.217.1.2 79420 1g9pA 45 5.07e+01 g.3.6.2 65171 1w8xN 126 5.08e+01 1zyoA 191 5.09e+01 2a1kA 233 5.11e+01 1vqoC 246 5.14e+01 1lr5A 163 5.16e+01 b.82.1.2 74215 1wjpA 107 5.18e+01 1twfI 122 5.34e+01 6rxn 46 5.39e+01 1rb9 g.41.5.1 45222 1w2lA 99 5.40e+01 3daaA 277 5.41e+01 1daaA e.17.1.1 43272 1u24A 337 5.46e+01 1bfg 146 5.49e+01 1bfg b.42.1.1 25485 1lvoA 302 5.57e+01 b.47.1.4 74284 1zx2A 147 5.94e+01 1juvA 193 5.94e+01 c.71.1.1 90912 1pvmA 184 5.97e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1wjvA 79 5.98e+01 1q33A 292 6.00e+01 d.113.1.1 95657 2bbkL 125 6.15e+01 2bbkL g.21.1.1 44882 1qtwA 285 6.18e+01 1qumA c.1.15.1 29392 1v6pA 62 6.29e+01 1f0xA 571 6.37e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1n6zA 105 6.39e+01 d.263.1.1 85369 1u00A 227 6.44e+01 1p32A 209 6.58e+01 1p32A d.25.1.1 38379 1y88A 199 6.65e+01 1sur 215 6.79e+01 1sur c.26.2.2 31620 1hyeA 313 6.82e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1kkeA 210 6.97e+01 b.21.1.2,b.83.1.2 68669,68670 1rmd 116 7.01e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 1dxsA 80 7.10e+01 1cokA a.60.1.2 17944 1xiwA 105 7.10e+01 7taa 478 7.22e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1vziA 126 7.37e+01 b.1.13.1,g.41.5.2 108967,108968 1afp 51 7.37e+01 1afp g.26.1.1 44947 1k7hA 476 7.44e+01 c.76.1.1 72101 2fiyA 309 7.47e+01 1sfp 114 7.47e+01 1sfp b.23.1.1 23895 1ty9A 222 7.47e+01 1k8kA 418 7.50e+01 c.55.1.1,c.55.1.1 68305,68306 1m2kA 249 7.76e+01 c.31.1.5 84754 1nykA 165 7.79e+01 b.33.1.1 86408 1pjhA 280 7.96e+01 c.14.1.3 94761 1pk6C 129 8.00e+01 b.22.1.1 94803 1nkoA 132 8.01e+01 b.1.1.1 85829 1zkkA 167 8.09e+01 1u3eM 174 8.10e+01 d.4.1.3,d.285.1.1 107640,107641 1rfs 139 8.15e+01 1rfs b.33.1.1 24434 1ysjA 404 8.18e+01 2fpeA 62 8.21e+01 1wc2A 181 8.28e+01 1gpr 162 8.30e+01 1gpr b.84.3.1 28267 1tljA 213 8.32e+01 d.282.1.1 107126 1exqA 154 8.49e+01 1b9dA c.55.3.2 33646 1zd9A 188 8.62e+01 1q68B 29 8.67e+01 j.108.1.1 95963 1k0mA 241 8.83e+01 a.45.1.1,c.47.1.5 67949,67950 1a7i 81 8.86e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1ogdA 131 8.90e+01 c.133.1.1 92893 1xd3A 230 8.92e+01 2au3A 407 8.98e+01